Construct: ORF ccsbBroad304_09069

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007750.1_s304c1, BRDN0000404585
Derived from:
ccsbBroadEn_09069
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXO38 (81545)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09069
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81545 FBXO38 F-box protein 38 NM_030793.5 99.9% 99.9% 409G>T
2 human 81545 FBXO38 F-box protein 38 XM_006714797.2 97% 97% 409G>T;2428_2526del
3 human 81545 FBXO38 F-box protein 38 NM_205836.3 93.6% 93.6% 409G>T;2428_2652del
4 human 81545 FBXO38 F-box protein 38 XM_024446223.1 93.6% 93.6% 409G>T;2428_2652del
5 human 81545 FBXO38 F-box protein 38 NM_001271723.1 84.6% 84.6% 409G>T;1917_1918ins510
6 human 81545 FBXO38 F-box protein 38 XR_001742284.1 74.1% (many diffs)
7 human 81545 FBXO38 F-box protein 38 XM_017009901.2 67.1% 67.1% 0_1ins1098
8 human 81545 FBXO38 F-box protein 38 XM_017009902.2 63.2% 62.7% (many diffs)
9 human 81545 FBXO38 F-box protein 38 XM_017009899.1 62.8% 62.8% 0_1ins1098;1330_1554del
10 human 81545 FBXO38 F-box protein 38 XM_011537684.3 59.2% 58.7% (many diffs)
11 human 81545 FBXO38 F-box protein 38 XM_017009900.2 59.2% 58.7% (many diffs)
12 mouse 107035 Fbxo38 F-box protein 38 XM_006525502.3 88.3% 93.6% (many diffs)
13 mouse 107035 Fbxo38 F-box protein 38 XM_006525501.3 88.3% 93.5% (many diffs)
14 mouse 107035 Fbxo38 F-box protein 38 NM_134136.3 82.8% 87.7% (many diffs)
15 mouse 107035 Fbxo38 F-box protein 38 XM_006525497.3 82.7% 87.6% (many diffs)
16 mouse 107035 Fbxo38 F-box protein 38 XM_006525498.1 82.7% 87.6% (many diffs)
17 mouse 107035 Fbxo38 F-box protein 38 XM_006525499.3 82.7% 87.6% (many diffs)
18 mouse 107035 Fbxo38 F-box protein 38 XM_011246802.2 64.7% 67.3% (many diffs)
19 mouse 107035 Fbxo38 F-box protein 38 XM_017317781.1 51.9% 53.4% (many diffs)
20 mouse 107035 Fbxo38 F-box protein 38 XM_017317780.1 51.9% 53.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3405
ORF length:
3339
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg gccacgaaag aaaagtgtga aaacatgtat catgaataat gaaattccag
121aagaaatgac agcagatgaa acaaaggact atatgaatca actttcacat gaagtacttt
181gccatatttt taggtacctc cctctgcagg atatcatgtg tatggaatgt ctttcccgga
241agctaaagga agcagtgacc ctatatctgc gagttgtgag agttgtagat ctctgtgcag
301ggcggtggtg ggaatacatg ccaagtggct ttacagatgc cagttttcta acactattaa
361agaagatgcc agatgttgaa cagctatatg gccttcaccc tcgatacctt gagaggcgaa
421gagtaagggg ccatgaggct tttagcattc caggagtcct agaagctttg cagtcatgcc
481caaacttagt gggtgtggaa acttctcatt tggagttggt agaatccatt tggacatata
541tgccccatgt tcatattttg gggaaatttc gtaatcgtaa tggagctttt ccaattcctc
601ctgaaaataa actgaaaatt cctataggag ccaaaattca aactttacat ttagttgggg
661tgaatgttcc tgaaattcct tgtatcccaa tgctaaggca cctttatatg aagtgggtaa
721gactcactaa accacagcca tttaaagact tcctttgtat cagcttaaga actttcgtca
781tgaggaactg tgcaggaccc acaaattcct tgaaatatgt ccctttagta acaggcttag
841cctctgcccg aaacttggaa cacttagaaa tggttcgagt tcctttcctt ggaggtctta
901tccaacatgt tgttgaagac agttggagat caggtggttt tagaaatttg cacactattg
961ttctgggagc ttgcaaaaat gctcttgaag tagatcttgg ttacctcatc attactgctg
1021cccgtaggtt acatgaagtt cggatccagc cttccctaac caaagatggt gtcttttctg
1081ccctaaagat ggcagagttg gagtttcccc agtttgaaac ccttcatcta ggatatgtag
1141atgagttttt gctacagagc agaatggcta atgcggatct ggtgaagtat ggtttggctg
1201atgtggtaga aaatcctggt atcatcactg atatagggat gaaagcagtc aatgaagttt
1261tttcctgtat caaatatctg gcaatttaca attgccctca tctacacaac ccatacaatt
1321ggatctcaga ccactcaaga tggactcgat tggttgatat caacctagta cggtgccatg
1381ctttgaagct ggactctttt ggccagttta ttgaattatt acccagccta gagtttattt
1441cactggatca gatgtttcgt gaaccaccca agggttgtgc tcgagttggt ctgagtgcag
1501gcacaggaat tggtgtttca tcagctcttg ttagcaacca gaactccaac aatgacgata
1561ataatgccca gaataacaat gccaacatcc acgacaacaa tcaccatcat ccagatgact
1621cagacgagga gaatgacttt cggcaagatc tgcagccagg agagcagcag tttgcagctg
1681acgcattaaa tgagatggaa gacatcgtcc aagaagatgg agaggtggtg gccgagagtg
1741gaaataatac tccagctcac agccaggcaa ttattcctgt ggatgttgat gaggaacaag
1801caggacccag tggtcttcag cgtgtagtaa aaccaacctc aattactgtt catgattcag
1861agagtgatga tgaagaagat agtctagaac tccaagaagt ctggattcct aagaacggta
1921ctcggcgtta ctctgaacgt gaagaaaaaa ctggagagtc agtgcagtcc agagaattgt
1981cagtaagtgg aaaaggcaag actccacttc gaaagaggta caactcccat cagatgggcc
2041agtcgaagca gtttcccctc gaggaaagca gctgtgagaa aggctgtcag gtcaccagtg
2101agcagatcaa agccgatatg aaagcagcta gggatattcc tgaaaagaaa aaaaacaagg
2161atgtttatcc cagctgcagc agcaccaccg ccagcacagt gggaaactcc agctcacaca
2221acactgcttc tcaaagcccc gactttgtaa ggacggtgaa cagcggcggc tcttccgagc
2281ctagccctac agaagtggat gtgtccaggc agtgtgcctg ctcccccggt gggtcagagg
2341actctgaggc catggaggag ggagatgcag agagttctgt ctgccccaga tgctgctgtc
2401acaggcccca ggaatcccaa aggagaacta gcaggtgttc tgatgaggaa cgtccttcaa
2461ccagccgagc ctgtgttgtg aatggcccgg atgaagtagc caaaacaaag ccacgtcacg
2521ccatgaaacg gaagcggaca gcagataaat ccactagtac aagtgatcct gtgatcgagg
2581atgaccatgt gcaggttctt gtattaaaat ccaagaatct tgttggagtc actatgacca
2641attgtggaat cacagatcta gtgctaaaag actgtccaaa gatgatgttc atccatgcta
2701ccaggtgcag ggtactaaaa catttaaagg tagaaaatgc accaattgta aaccgatttg
2761actatgcaca gtgcaagaaa ctgaacatgg atcaggtact agaccagata ctaagaatgc
2821cacccgagag aaaccgcatc atatacctac gcccaatgca gcaggtggac actctaactt
2881tggagcagaa gctatttagt ggtccctacc cctatcacat ctgtattatc catgaattca
2941gtaaccctcc caatgtccgg aataaggtgc gcattcgcag ctggatggac actatagcaa
3001acatcaatca agagctcatt aaatatgaat tcttccctga agccactcga agtgaagaag
3061acttaaagaa ataccccaag tacccctggg ggagagaaat ctatacttta gaaggtgttg
3121tggatggagc tccatattcc atgatttctg acttcccttg gctgaggtca ttacgagctg
3181cagagcccaa cagcttcgct cgatacgact ttgaagacga tgaagaaagc actatctatg
3241ctcctagaag gaaaggacag ctgtctgcag acatctgtat ggaaacaata ggagaggaaa
3301tttcagagat gcgtcagatg aagaagggtg tatttcagcg agtagtggca atttttatcc
3361actattgtga tgtcaatgga gagccagttg aagatgacta catttaccca actttcttgt
3421acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
3481gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)