Nucleotide Global Alignment

Description

Query:
ccsbBroad304_09805
Subject:
XR_002958675.1
Aligned Length:
4458
Identities:
960
Gaps:
3496

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCATCCTATGAATTGGGTCATTCATGTCCTACCCAGCTAAAACAGAGGCCAGGAGCCAGGGAGGAAAAGCAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGCCACACAACATTGTTTCCGAAATGGACTTCTCTGCAAGCCTGACTCCTGAGACTGTGCATTGTACCCTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AACCAGCTTTATCCATAGCTTCTGCGATAAATGGCTGTAAGTCTTGGACTCCTTGCTCCAAACGCAGCGACTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAATAGAACCTCCCAGCTCCCAGCCCTTCCTAGTGCCCATGGGCTTTACATAGGGCAAGAGAACATTTCTCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTATAATTGCCATCTCTTTGCTCTCTCAACATGGTGAACACCATCCGGACTCCGTGTATGTCTCAAATTACAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTCTTTCTTTGCAAATGAAATATGAAATTTAGAGGCTCTTCTAAACACTTTAAATTTGATTTGACATTTTCAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCAGATGTAAGTTTTAGAGAATGAGATTCTCCATAAAAATGACCCTTTCATGCTGTGGCCTCCATAGAAGATGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCAGGCCAGGTGCCCACATGGCAGGCATTTATTTTCTCACAGATCTGGAAGCTGCAGGTCCAACTTCGAGGGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGGGTGGGGTTGTTTCCTCTGAGGCCGCTCCTTCTGGCTGGCAGGGAGTCTCTTCCAGCCGTGTCCTCTGTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTTCCTCTATGCACACGCACCTCTGGGATCTCTCTGCCTCCAAATATCATCTTTTTTTTTTTTTTTTTTTTTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGAGACAGAGTGTTGCTCCTCTTGTCCAGGCTGGAATGCAATGGCACAATCTGGACTCACTGCAACCTCCGCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCCCGAGTTTAAGCGATTCTTCTGCTTCAGCCTCCCGAGTAAAAGGCATGCATCACCACACCTGGTTAATTTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TAGTTTTAGTAGAGATGGGGTCTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTCTCAGCCTCTCCAAGTGCTGGGATTACAGGCATCAGCCACTATGCCCGGCTGGGATCATATGTTCCACACAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTTTGTTCAATAAGCATGGACTGCAACCACCTACATGAATATTCATAGCTCCTCCTGTAGCCTGTTGAATATGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATGTTTAGCCAACCTCTTCAGCATAAAGCTCCTGCCCAAACCCCTCCTGCTCCTAAATGTCTGTCTCTGGTGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AACCAGAGGCTGCTCTTCCCAGGCTGCTGGATGGCTACCTTGCAGGCTGTCACCCTTAACAAGAAATAAAGTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTTTGCAAATGCATCCCTTGTGTAATTTGTAGGTCACCGCGCCATGGGAACACGCTACCATGGGAAGGGAGCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGAGACGCGCAGGGAGGCTCCAGACAGGCTGGCCTGGGACACCAGCCGCTGCCCTTCCATAACATGGGGACAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGAGGGCAAAAGTTCAGCCCAACACGGAGGATCTTCGGGCAGGAGATGGGGAAGAAGGAGAAGCAGGAAGGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGAGCTCAGTGTGGGGGCGCGCATGGCATCCCGGTGGGACATCTGAGGCCCACACCCACCTGCTGTCCCTCCCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCCACGGTGGCCACCGAGGGTGAAGGCCTGGGGGGAGGCAGACGCCTGGCCCTTTACTCTCCCTCCCTGTCCCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGGCCGCTGGGTGGGGGCCGTCTCTGGGATGATCCCCGAGGGCAGGATCCGGGAGTCCCTGCAGAGGCATCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTGTCTGTCTTGATGGTGGAGTGGCGGCTCCAGCTGGGCGGGACCACCAGGGGAGGGGCTTGTGCTCTGCTGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTCAGCCTGGTGTGGACCCACCTCCCGGGCGCTGGCTGCAATGACTTTCTCTTTCCCTTTGCAATTGCCTTGGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCCTGCCGCACAGAGCGGCCTGTCTTTATCAGAGGTCCCTCTGCCAGGGGGAGGGCCCCAGAGAAAACCAGAAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GAGGGTGAGAGACTGAGGAAGATAAAGCGTCCCAGGGCCTCCTACACCAGCGCCTGAGCAGGAAGGGGGAGGGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCATGACTACGAGGCCCTGGGAGGTCACTTTAGGGAGGGCTGTCCTGAAACCTGGAGCCTGGAGCAGAAAGTGA  2072

Query    1  -------------------------------------------------ATGAAGCCTCACTTCAGAAACACAG  25
                                                             |||||||||||||||||||||||||
Sbjct 2073  AACCCTGGTGCTCCAGACAAAGATCTTAGTCGGGACTAGCCGGCCAAGGATGAAGCCTCACTTCAGAAACACAG  2146

Query   26  TGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTTCTCGTCGGAATACCGTC  99
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTTCTCGTCGGAATACCGTC  2220

Query  100  TGGCTGTGCTACGAAGTGAAAACAAAGGGTCCCTCAAGGCCCCGTTTGGACGCAAAGATCTTTCGAGGCCAGGT  173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  TGGCTGTGCTACGAAGTGAAAACAAAGGGTCCCTCAAGGCCCCGTTTGGACGCAAAGATCTTTCGAGGCCAGGT  2294

Query  174  GTATTCCCAGCCTGAGCACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACA  247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GTATTCCCAGCCTGAGCACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACA  2368

Query  248  AGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTG  321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  AGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTG  2442

Query  322  TCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAG  395
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAG  2516

Query  396  GGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGTGTGAAGATTATGGACGATGAAGAATTTGCATACTGCTGGG  469
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  GGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGCGTGAAGATTATGGACGATGAAGAATTTGCATACTGCTGGG  2590

Query  470  AAAACTTTGTGTACAGTGAAGGTCAGCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCTGCAC  543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  AAAACTTTGTGTACAGTGAAGGTCAGCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCTGCAC  2664

Query  544  CGCACGCTAAAGGAGATTCTCAGAAACCCGATGGAGGCAATGTATCCACACATATTCTACTTCCACTTTAAAAA  617
            ||||||||||||||||||||                                                      
Sbjct 2665  CGCACGCTAAAGGAGATTCT------------------------------------------------------  2684

Query  618  CCTACGCAAAGCCTATGGTCGGAACGAAAGCTGGCTGTGCTTCACCATGGAAGTTGTAAAGCACCACTCACCTA  691
                                                                                      
Sbjct 2685  --------------------------------------------------------------------------  2684

Query  692  TCTCCTGGAAGAGGGGCGTCTTCCGAAACCAGGTGGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTC  765
                                         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2685  -----------------------------CAGGTGGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTC  2729

Query  766  TCTTGGTTCTGTGACGACATACTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTG  839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2730  TCTTGGTTCTGTGACGACATACTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTG  2803

Query  840  CCCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTGGCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCC  913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2804  CCCAGAGTGTGCAGGGGAGGTGGCCGAGTTCCTGGCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCC  2877

Query  914  GCCTCTACTACTTCTGGGATACAGATTACCAGGAGGGGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAG  987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2878  GCCTCTACTACTTCTGGGATACAGATTACCAGGAGGGGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAG  2951

Query  988  ATCATGGGCTACAAAGATTTTAAATATTGTTGGGAAAACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTG  1061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2952  ATCATGGGCTACAAAGATTTTAAATATTGTTGGGAAAACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTG  3025

Query 1062  GAAAGGACTAAAATACAACTTTCTATTCCTGGACAGCAAGCTGCAGGAGATTCTCGAG----------------  1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct 3026  GAAAGGACTAAAATACAACTTTCTATTCCTGGACAGCAAGCTGCAGGAGATTCTCGAGTGAGGGGTCTCCCCGG  3099

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3100  GCCTCATGGTCTGTCTCCTCTAGCCTCCTGCTCATGTTGTGCAGGCCTCCCCTCCATCCTGGACCAGCTGTGCT  3173

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3174  TTTGCCTGGTCATCCTGAGCCCCTCCTGGCCTCAGGGCCATTCCATAGTGCTCCCCTGCCTCACCACCTCCTCT  3247

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3248  CCGCTCTCCCAGGCTCTTCCTGCAGAGGCCTCTTTCTGCCTCCATGGCTATCCATCCACCCACCAAGACCCTGT  3321

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3322  TCCCTGAGCCTGCATGCCCCTAACCTGCCTTTTCCCATCTCCCCAGCATAACCTAATATTTTTTTTTTTTTTTT  3395

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3396  GAGACGGAATTTCGCTCTGTCACCCAGACTGGAGTGCAATGGCTTGATCTTGGCTCACTGCAAACTCTGCCTAC  3469

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3470  CAGGTTCAAGCGATTCTCCTGCCTCCGCCTCCCGAGTAGCTGGAATTACAGACGCCTGCCACCACGCACAGCTA  3543

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3544  ACTTTTTTTTTTTTTGTATTTTTAGTAGTGACTGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGAC  3617

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3618  CTCAGGTGATCCGCCTATCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGGCCCGGCGGCACAA  3691

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3692  CCAAATCTTATTAAACTCACCCTAGGCTGGCCGCGGTGACTCATGCCTATAATCCCCCAGCAATTTGGGAGGCA  3765

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3766  GAGGTGAGAGAATCGCTTGAGCCCAGGAATTCGAGACCAGCCTGGGCCACATGACAAAGCCCCATCTCTACAAA  3839

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3840  AAAATTACAAAAAAAAAAAAAACAGGTGTGGTGGCATGCACCTGTAGTTGAAGCTACTTGGAAGGATGAAGTGG  3913

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3914  GAGGATTGCTTGAGCCGGGGAGGTGGAGGCTGCAGTGAACTGAGATCACGTCACTGAACTCCAGTCTGAGCAAC  3987

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 3988  AGATCGAGACCCTGCCTGAAAATAAATCAATAAATAAACTCAACCGAAATGGGTATGAAAGTTGAAATGGGTAT  4061

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 4062  GTAAGTTGAAAACCAGAAGTTTTGAGAAACATCCTTTGTTAACTTTCATCCTACAAATTGGGTCATTCATGTCC  4135

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 4136  TACGCAGCTAAAACAGAGCCCAGGAGCCAGGGAGGAAAAGCAGTCAGGCCACACACCATTGCTCCCAAAATGGA  4209

Query 1120  --------------------------------------------------------------------------  1119
                                                                                      
Sbjct 4210  CTTCTCTGCAAGCCTGACTCCTGAAACTGTGCATTGTACCCTGAAACCAGCTTTATCCATAGCTTCTGCAATAA  4283

Query 1120  ------------------  1119
                              
Sbjct 4284  ATGGCTGTAAGTCTTGGA  4301