Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_09869
- Subject:
- NM_001286792.2
- Aligned Length:
- 4017
- Identities:
- 1955
- Gaps:
- 2061
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCAAAGCGTAGGCCTCACAAACATCCTGGCCGTGAAGAGCTTGTCTTCAAGAGTAGCTGGTGCAGAAACTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCCGTGGCCACCCAGGAGCCCGATGTGCAAGGCAGGTGTGAGTGCCAGGACGGCATTCCTGGAGATGAAGGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGAGCTGCGGTCTGCGGACTCGGCAGTGCCCGTGGCCATGACCCAGGCTGCCGTGCGGCCCTGGGCACCCTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGGAGAACATGACCACTGCCCCAAACGGCCTCGGGCCAGGCCCCGCAGCCCCCTGTGCAGGCTCGGACCTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGACGCCAAGATGGTGACCTCCCTTGCGTGTGGAAATGGAGTCTGTGGCTGCAGCCCTGGTGGCGACACGGACA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCAGGAAGCCAAACTCAGCCCAGCCAAGCTTGTGCGCCTCTTTTCCACCAGTCGGAAGAGGACGGGTGCCCAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGAGCGGCCCCACTCCATGGTCCTGGTGGGGAACTCCTCCACATGGAACACCCTCGCCTCCTTCCGGAAAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGATCCTTTAAGAAACTGAAGTCCTCAGTCCTGAAAGGAATTCAGAGCCGAGAGGGGTCAAATGCCTGTTCAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGGAGAGGCTTCGGAGCATGGCCTGGGAAAGTCCATCCCAAATGGCGCTGTCCCAGGAGCCCAGGCAAGCAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGCTCCCCCTTAGCACCGGGACCAGCATGTGGTGCCCTCAGGCCAGCAGAGTGGGGCACATTGGATGGCTCCGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCTCGAGGACACGGACGATGCCTTCCAGCGGAGCACACACCGCTCCCGCAGCCTCCGCAGAGCCTACGGCCTGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCGCATCTGCCTGCTGGATGCGCCCCAGAACCATGCGACACCCACGATAGCCACTGGCCAGGTGCCCGCCGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGTGAGATTCTCGTGAGGGACCCTGAAAACAACAGCATGGGCTACAGGAGGAGCAAGAGCACGGACAATCTTGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTTCTGAAGAAGAGCTCCTTTAAGCGGAAGTCCACCTCCAATCTTGCAGACCTCAGGACGGCCCATGACGCAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGGTACCACAGAGGACCCTGAGCAGTTCCTCCACTGACTCCCAAAAGCTTGGGTCAGGAAGGACCAAACGCTGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGAGCCCGATAAGGGCCAAGGACTTTGACAGAGTCTTCAAACTTGTGAGCAATGTGACTGAGGCTGCCTGGAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GAGGGAGAGTCCTAGGAGTGGGGCCCCATCCCCTGGAGAGGCCAGCCTGAGACTTCAGGCACACAGCCGGCTGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATGACGACTACTCCCGCCGCGTCTCCAGGAGCACTGAGCAGGACAGCAGGCGGGGCGGGGCGGTCATGCATGGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACCACTGCAACCTGCACCGTGGCCCCCGGTTTCGGCTCAGCCACCTCTAAGGGGCCCCACCTAGACGCTGACAC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TGCCGTATTTCCTCTTGAAACCAAAAGTTCCTGGGCGGTGGAAAGCGACAGTTCCTGCACTTGCAGCTCTTTGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAAGCCCGATTGTCCAGGATGTGTTGAGCAAAGACTCCTGTGACCCAAACGCTGGCAGCCAGTTGACATTTGAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCTGAGCAGCCTCCCACCCCTCTAAGGCCCACCACACCCAAGCCCCAGAGCCCTCAGAGCCCCCAGAGCCCCGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGCAGGAAGTGCCAGCTGTCACAGCAATCACAGTGCCCTGTCCGCGAATTCAGAGGAAAGTGAAGGAAGGGCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGAGCCTGCTCAGAGAGAGCCAGGGCCTGTGTCCTTGCAGGATCCCCTGGAAGCCACACATGGTGATGAGGGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGCAAGGACCTTCTGGTGAACATTGGTGTGGCAGCCGGCCCAGAAGAAAAGGAGAAGGAGGAGGTCGTCCCTGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGGCCCCTGGAGGCGAAGCTCATCACAGGATGAGGAAAGGACAGAGGCACAGAGAACCCCCAAGAGGAGATGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCTCTGGGAGACGGCCAAGGCCTCGGCCATTCTCTGACTACGGCCAGCTGGCCAGCCGCAGTTTGTCTATTCCT 1998
Query 1 ---------------------------------------------------------------ATGACTTCTGC 11
|||||||||||
Sbjct 1999 GAAGACTCGGTTGCTGCAGACCCCCAGAAGGAAGACCGTGTGGACGAGGACCCCCAGGCAAGCATGACTTCTGC 2072
Query 12 CAGCCCTGAAGACCAGAATGCTCCAGTGGGCTGCCCCAAAGGAGCCCGGAGAAGGCGCCCCATTTCCGTGATAG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CAGCCCTGAAGACCAGAATGCTCCAGTGGGCTGCCCCAAAGGAGCCCGGAGAAGGCGCCCCATTTCCGTGATAG 2146
Query 86 GTGGGGTCAGCTTGTATGGGACCAACCAGACGGAGGAACTGGACAATCTTCTGACCCAACCGGCTTCCAGGCCG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GTGGGGTCAGCTTGTATGGGACCAACCAGACGGAGGAACTGGACAATCTTCTGACCCAACCGGCTTCCAGGCCG 2220
Query 160 CCCATGCCTGCTCACCAGGTGCCACCCTACAAGGCTGTGTCGGCCCGGTTCCGGCCCTTCACATTCTCCCAGAG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CCCATGCCTGCTCACCAGGTGCCACCCTACAAGGCTGTGTCGGCCCGGTTCCGGCCCTTCACATTCTCCCAGAG 2294
Query 234 CACCCCCATTGGGTTGGACCGTGTGGGACGCCGGCGGCAGATGAGAGCATCCAACGTTTCTTCAGATGGAGGTA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CACCCCCATTGGGTTGGACCGTGTGGGACGCCGGCGGCAGATGAGAGCATCCAACGTTTCTTCAGATGGAGGTA 2368
Query 308 CTGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAGCTATGAAGACCTCTGCCAGGCCAGC 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CTGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAGCTATGAAGACCTCTGCCAGGCCAGC 2442
Query 382 CCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATCAATGAGCTGATCAGTGATGGCAACGTGGTCTGCGC 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATCAATGAGCTGATCAGTGATGGCAACGTGGTCTGCGC 2516
Query 456 AGAAGCCCTGTGGGACCATGTGACCATGGATGACCAGGAACTGGGCTTCAAAGCCGGGGATGTCATCCAGGTTC 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 AGAAGCCCTGTGGGACCATGTGACCATGGATGACCAGGAACTGGGCTTCAAAGCCGGGGATGTCATCCAGGTTC 2590
Query 530 TGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGCAGTGAAGATAAGGAAGCCTGGTTCCCCGCGAGCTTCGTC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGCAGTGAAGATAAGGAAGCCTGGTTCCCCGCGAGCTTCGTC 2664
Query 604 AGATTGCGAGTGAATCAGGAAGAGCTGTCGGAAAACTCCAGCAGCACCCCCAGTGAGGAGCAGGACGAGGAGGC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 AGATTGCGAGTGAATCAGGAAGAGCTGTCGGAAAACTCCAGCAGCACCCCCAGTGAGGAGCAGGACGAGGAGGC 2738
Query 678 CAGCCAGAGCCGCCACAGACACTGTGAGAACAAGCAGCAGATGCGGACCAACGTCATCCGGGAGATCATGGACA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 CAGCCAGAGCCGCCACAGACACTGTGAGAACAAGCAGCAGATGCGGACCAACGTCATCCGGGAGATCATGGACA 2812
Query 752 CCGAGCGGGTGTACATCAAACACCTCAGGGACATCTGTGAGGGCTATATCCGACAGTGCCGCAAGCACACAGGA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 CCGAGCGGGTGTACATCAAACACCTCAGGGACATCTGTGAGGGCTATATCCGACAGTGCCGCAAGCACACAGGA 2886
Query 826 ATGTTCACCGTTGCGCAGNTAGCCACTATTTTTGGAAACATTGAAGATATTTACAAATTCCAAAGAAAGTTTCT 899
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 ATGTTCACCGTTGCGCAGCTAGCCACTATTTTTGGAAACATTGAAGATATTTACAAATTCCAAAGAAAGTTTCT 2960
Query 900 GAAAGACCTTGAGAAACAGTACAACAAAGAGGAACCTCACTTAAGTGAAATAGGATCTTGCTTTCTTCAAAATC 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 GAAAGACCTTGAGAAACAGTACAACAAAGAGGAACCTCACTTAAGTGAAATAGGATCTTGCTTTCTTCAAAATC 3034
Query 974 AAGAGGGCTTTGCCATCTATTCCGAGTACTGCAACAACCACCCGGGCGCCTGCCTGGAGCTCGCCAACCTCATG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 AAGAGGGCTTTGCCATCTATTCCGAGTACTGCAACAACCACCCGGGCGCCTGCCTGGAGCTCGCCAACCTCATG 3108
Query 1048 AAGCAGGGCAAGTACAGACATTTCTTTGAAGCCTGCCGCCTGCTGCAGCAGATGATTGACATCGCCATCGACGG 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 AAGCAGGGCAAGTACAGACATTTCTTTGAAGCCTGCCGCCTGCTGCAGCAGATGATTGACATCGCCATCGACGG 3182
Query 1122 GTTCCTGCTCACACCAGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCAAGTATACCACAC 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 GTTCCTGCTCACACCAGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCAAGTATACCACAC 3256
Query 1196 AGGAACACGGTGATTACAGCAACATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGTCTGATCAACGAG 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 AGGAACACGGTGATTACAGCAACATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGTCTGATCAACGAG 3330
Query 1270 CGCAAGCGCAAGCTGGAGAGCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCTGGGAGGGACTGGA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CGCAAGCGCAAGCTGGAGAGCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCTGGGAGGGACTGGA 3404
Query 1344 TATCTTAGACCGAAGCTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAAGGCAAAAGCCAGC 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TATCTTAGACCGAAGCTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAAGGCAAAAGCCAGC 3478
Query 1418 AGCGGACGTTCTTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTGTAC 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 AGCGGACGTTCTTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTGTAC 3552
Query 1492 TACAAGGGCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGGATGGGCGCGACAAGGACTGCAACCT 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 TACAAGGGCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGGATGGGCGCGACAAGGACTGCAACCT 3626
Query 1566 CAGCGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGAGGTTTATTTGTTTTGTGCCAAAAAACAAG 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 CAGCGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGAGGTTTATTTGTTTTGTGCCAAAAAACAAG 3700
Query 1640 AAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGGAGGCGGGTGCAAGAGGACAAGGAGATGGGAATG 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 AAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGGAGGCGGGTGCAAGAGGACAAGGAGATGGGAATG 3774
Query 1714 GAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAAATGCTCAAAAGGCAGGACATGGAAAGTCAAAAGGCTA 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 GAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAAATGCTCAAAAGGCAGGACATGGAAAGTCAAAAGGCTA 3848
Query 1788 CAACAGGTGCCCTGTGGCCCCACCGCACCAGGGCCTGCACCCCATCCACCAGCGCCACATCACTATGCCCACAA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 CAACAGGTGCCCTGTGGCCCCACCGCACCAGGGCCTGCACCCCATCCACCAGCGCCACATCACTATGCCCACAA 3922
Query 1862 GCGTCCCCCAGCAGCAGGTCTTTGGCCTGGCGGAACCCAAGAGGAAGTCCTCGCTCTTCTGGCACACCTTCAAC 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 GCGTCCCCCAGCAGCAGGTCTTTGGCCTGGCGGAACCCAAGAGGAAGTCCTCGCTCTTCTGGCACACCTTCAAC 3996
Query 1936 AGGCTCACCCCCTTCCGGAAA 1956
|||||||||||||||||||||
Sbjct 3997 AGGCTCACCCCCTTCCGGAAA 4017
