Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10494
- Subject:
- NR_160526.1
- Aligned Length:
- 3532
- Identities:
- 1245
- Gaps:
- 2085
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA 148
Query 1 -----------ATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 222
Query 64 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 296
Query 138 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 370
Query 212 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 444
Query 286 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 518
Query 360 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT 592
Query 434 TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA 666
Query 508 AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAGTTTTAGATGTTGAGACTGGAAATGAG-TATGGGA 580
||||||||||||||||||||||||||||||||||| ||| |..|| ||
Sbjct 667 AAGTATGAATCTCCAGAACTTGAATCCCAACAGGA--AAG---------------------ACCAGCTA----- 712
Query 581 ATTTAAAGCAA-GAAGT--TTCTGAAGAAAT-----GGAACCACA---TGG---GAA---------GA------ 625
||| |||.| ||||||| |||| .|||||.|| ||| ||| ||
Sbjct 713 --------CAAGGAAATACTTCTGAA-AAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTC 777
Query 626 -CA-TCCAGTAAATTTGAAAATGATATGTCCAAGTCTGCTAGGTGT----GGAGA-AACTC-----GTGAACCT 687
|| ||||| |||| .||| ||| ||| ||||| |.||| |||| ||
Sbjct 778 TCATTCCAG----------AATG------GCAA-TCT------TGTTTCAGGAGAGATCTCTAATAGTGA--CT 826
Query 688 GAAGAAATAACAGAAGAGCCCTCTGCTTGCTCCAGAGAA-------GATAAACAA-------------CCT--A 739
||.| .|||..|||||...||.|||.|....||.|||| |..|||.|| ||| |
Sbjct 827 GATG--GTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAA 898
Query 740 CCTGTGATGAAAATGGAGTAAGCCTGACTGAGAACTCTGACCATA-----CTGAACAT--CAGAGAATCTGTCC 806
.|| |.|||.|| || ||| |||||...||| |||.||.| ||||| |||||
Sbjct 899 ACT----TTAAATTG--------CT-ACT-----CTCTGGAGATAGCTACCTGGACTTTACAGAG---CTGTC- 950
Query 807 AGGAGAAGAATCTTACGGATGTGATGACTG---TGGAAAAGCTTTTAGTCAG-CACTCACACCTCATAGAACAT 876
|||||| ||| .|||.|...||.|.| ||||||| || ||||...||.|||
Sbjct 951 ---AGAAGA--CTT-GGGAAGGTTTGCCAGCATTGGAAAA----------AGCCACTTGGACTTCA-------- 1000
Query 877 CAGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGAATGTGGAAAAGCTTT--CCGTGGGAGAACTGTG 948
||||| ||| |..|||||.|..|| ||||||| |.||.|
Sbjct 1001 CAGAG--------CTG-----------------TCAGAAGACTTAGG--AAGCTTTGCCAGTAG---------- 1037
Query 949 CTTATTC--GACACAAAATAATACACACTGGAGAGAAACCGTATAAGTGTAATGAA-----TG-TGGCAAAGCC 1014
||| ||.||.|.| |||||| |.|.||||| || |||.|.||.|
Sbjct 1038 ----TTCCTGAGACCAGA-AATACA----------------------TATTATGAAGCAGGTGCTGGAACAGGC 1084
Query 1015 TTTGGCCGGTGGTCAGCTCTTAACCAACATCAGAGACTTCACACA-------------GGAGAA--AAACACTA 1073
..||||| ||.||.|..||..||.||.|.| .||||| ||||
Sbjct 1085 CCTGGCC----------------CCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAAC---- 1138
Query 1074 TCACTGTAATGACTGTGGC----AAAGCCTTTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCACACA 1143
|||.|||| |||| ||| ||.|| ||.|.|||.|||...|.|
Sbjct 1139 ------TAAGGACT-TGGCTCCAAAA---------CAAAA----------------CAAAACAAAATCTGGAGA 1180
Query 1144 AG---------------------------AGA----CAAACCTTATCAGTGCACTCAGTGTAATAAAAGTTTTA 1186
.| ||| ||| .||||.||||.|.||||||.||||||.||||
Sbjct 1181 TGCTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAA----CATCAATGCAGTAAGTGTAGTAAAAGCTTTA 1250
Query 1187 GT---CGGCGTTCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGA------------- 1244
|| .||.|...|| |||||||||||||.|||||.|| || ||||
Sbjct 1251 GTTTATGGTGAGTCA---TTACTCAGCATCATGGAGTCCA---CG------------ATGAAGAGAATCTCTTT 1306
Query 1245 -------GTG----CAACGAG-TGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCC 1306
||| ||||.|| |.|.||||.||.||||||||||....|.||||..||||||...||.|.|.||
Sbjct 1307 TCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCCTAGAAGAACC 1380
Query 1307 ACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAG 1380
|||||||.||||||||||.|||...||||||||||||||||...|||||.||.| ||||||||||...|.|||.
Sbjct 1381 ACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACA-TGGCCTTATTTGACTTCAA 1453
Query 1381 AGAATTCACACTG-GGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTA 1453
|||||.|||| || |.||.|.||...|.||||||.| ||..|||..|.||||||.|||| .|||
Sbjct 1454 AGAATCCACA-TGAGAGAGAGACTGCATAAATGTAA--TAACTGAGGAGGCCTTTGTTCA----GCAA------ 1514
Query 1454 CAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCA-AAG 1526
|||| |.|..||.||.||| |.|||||| .|.|||.|||||.|.||.||.|| |||
Sbjct 1515 -AGAA----ACCTTATACAAACT----------CGTATAAA------GAATGTAGGAAGACCTTCACCCAGAAG 1567
Query 1527 ATCAGTCCTCACGGAACATCAGAGAATC--CACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGC 1598
.|||..||.||.|..||.||||||||| |||| |.||...||||||.|||||..||||
Sbjct 1568 -CCAGGACTGACTGTGCACCAGAGAATCTGCACA---------------ATAAACATGATGAATGTGGAGATGC 1625
Query 1599 CTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGT 1672
.|.| ||||||||..||||||.||||.|...|.|||.||||.|||.||||||||||
Sbjct 1626 TTGC-------------------TTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTGCCAGTGTGATGAGT 1680
Query 1673 GTGGAAAAGCCTTCAGACAGAGGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAA 1746
..|||||||.|||||||....||| ||||..|||||||||.|
Sbjct 1681 ACGGAAAAGTCTTCAGAGGTTGGA----------------------ACTTGGGAAAAATCAGT----------- 1721
Query 1747 GCTGGAGTGAATCTTCTCCT------GAGCTCTCTCATTCCAGAATG----------GCAATCTTGNTTCAG-- 1802
|||||||| ||.| ||| .||||.|| .|||| |.||.||||..| ||
Sbjct 1722 ----GAGTGAAT----TCATATTAGAGAG-GCTCTTAT----AAATGAGAGGATTGTGGAAACTTGTAT-AGAC 1781
Query 1803 -GAG---AGATCTC------------------------------------------------------------ 1812
||| |||.|||
Sbjct 1782 AGAGATCAGACCTCAACAAGGGAGCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGT 1855
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 1856 ATGGGGAATGGGTAGTCTAAATTGCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAG 1929
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 1930 GAAATGTTAGAAGTTATTTTTCCCTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTG 2003
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2004 CATCTCTGGATTTGTGATCTGTCTCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCT 2077
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2078 GCTCTAGTCTCATCTCATATCTTTAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGT 2151
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2152 AAATATATATATATTATTTTCTTTTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATAT 2225
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2226 ATCATGTTTCAGTAAATGCAGTGAAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTAC 2299
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2300 CTTTATATTCTCCAACACAAGACCGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATT 2373
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2374 TTCTTTATTTTTTTGAGATGGAGTCTTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACT 2447
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2448 GCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTGC 2521
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2522 CACCATTCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT 2595
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2596 CCTGACCTTGTGATCTGCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTG 2669
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2670 TTTTTTTAAGATAGAAAAATATACTTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGAT 2743
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2744 AACACATAATAAACATTGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGA 2817
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2818 ATCTTTAGAAGCTGTCAACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATAT 2891
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2892 TTTATAGTAGGGCACTAAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGT 2965
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 2966 CCCTCTGCTGTACATCCCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTG 3039
Query 1813 -------------------------------------------------------------------------- 1812
Sbjct 3040 TTCTGTAAAAAGCTTTTCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGAT 3113
Query 1813 ------------------------------------------------------ 1812
Sbjct 3114 TTCTTAATATTGAACCAACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA 3167
