Construct: ORF ccsbBroad304_10494

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001196.1_s304c1, BRDN0000407720
Derived from:
ccsbBroadEn_10494
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZSCAN12 (9753)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10494
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9753 ZSCAN12 zinc finger and SCAN domain... NM_001163391.2 94.7% 92.8% (many diffs)
2 human 9753 ZSCAN12 zinc finger and SCAN domain... NM_001368124.1 94.7% 92.8% (many diffs)
3 human 9753 ZSCAN12 zinc finger and SCAN domain... XM_011515014.3 94.7% 92.8% (many diffs)
4 human 9753 ZSCAN12 zinc finger and SCAN domain... XM_011515015.2 94.7% 92.8% (many diffs)
5 human 9753 ZSCAN12 zinc finger and SCAN domain... XM_017011528.2 94.7% 92.8% (many diffs)
6 human 9753 ZSCAN12 zinc finger and SCAN domain... XM_024446598.1 94.7% 92.8% (many diffs)
7 human 9753 ZSCAN12 zinc finger and SCAN domain... XM_011515017.3 93.5% 93.5% 1695_1696ins117
8 human 9753 ZSCAN12 zinc finger and SCAN domain... NR_028077.2 41.8% 1_159del;1956T>N;1972_4323del
9 human 9753 ZSCAN12 zinc finger and SCAN domain... NR_136509.2 40.2% (many diffs)
10 human 9753 ZSCAN12 zinc finger and SCAN domain... NR_136512.2 39.9% (many diffs)
11 human 9753 ZSCAN12 zinc finger and SCAN domain... NR_136510.2 39.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1878
ORF length:
1812
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc atctacttgg gctatccagg cccacatgga ccaggatgaa cctttggaag
121taaagataga ggaagagaaa tataccacca gacaggattg ggacctgcgt aaaaacaaca
181cccatagcag agaggtcttc cgtcagtact tcagacagtt ctgctaccag gagacatctg
241gtccccgtga ggctttgagc cgactccgag aactttgcca tcagtggctg aggccagaga
301cccacaccaa agaacagatt ctggagctgc tggtgctgga gcagttcctg accatcctac
361ctgaggagct ccaggcctgg gtgcaggagc agcatccaga gagtggggag gaggtggtga
421ctgtgctgga ggatttagag agagaactgg atgaaccagg agagcaggtc tcagtccaca
481ctggggaaca ggaaatgttc ttgcaggaga cggtacgtct acgaaaagaa ggagaaccca
541gtatgtccct ccagtccatg aaagcccagc caaagtatga atctccagaa cttgaatccc
601aacaggagca agttttagat gttgagactg gaaatgagta tgggaattta aagcaagaag
661tttctgaaga aatggaacca catgggaaga catccagtaa atttgaaaat gatatgtcca
721agtctgctag gtgtggagaa actcgtgaac ctgaagaaat aacagaagag ccctctgctt
781gctccagaga agataaacaa cctacctgtg atgaaaatgg agtaagcctg actgagaact
841ctgaccatac tgaacatcag agaatctgtc caggagaaga atcttacgga tgtgatgact
901gtggaaaagc ttttagtcag cactcacacc tcatagaaca tcagaggatc catactggag
961atagacccta caaatgcgaa gaatgtggaa aagctttccg tgggagaact gtgcttattc
1021gacacaaaat aatacacact ggagagaaac cgtataagtg taatgaatgt ggcaaagcct
1081ttggccggtg gtcagctctt aaccaacatc agagacttca cacaggagaa aaacactatc
1141actgtaatga ctgtggcaaa gcctttagtc agaaagcagg cctctttcac catatcaaga
1201tccacacaag agacaaacct tatcagtgca ctcagtgtaa taaaagtttt agtcggcgtt
1261ccatacttac tcagcatcaa ggagttcata ccggcgccaa gccgtatgag tgcaacgagt
1321gtggaaaagc ctttgtttat aactcatccc ttgtttccca tcaggaaatc caccacaaag
1381aaaaatgcta tcagtgtaag gaatgtggga aatccttcag tcagagtggc cttattcagc
1441atcagagaat tcacactggg gaaaaaccct acaaatgtga cgtatgtgaa aaagccttta
1501ttcaaaggac aagtcttaca gaacatcagc gaattcacac tggagaaaga ccctataaat
1561gtgataagtg tgggaaggcg tttactcaaa gatcagtcct cacggaacat cagagaatcc
1621acactggaga gaggccctac aagtgtgatg agtgtgggaa tgccttccga ggaatcacca
1681gcctcattca gcatcagaga atccacactg gggagaagcc ctaccaatgt gatgagtgtg
1741gaaaagcctt cagacagagg aagaagacca gctacaagga aatacttctg aaaaatcact
1801ctgaacccca agctggagtg aatcttctcc tgagctctct cattccagaa tggcaatctt
1861gnttcaggag agatctctac ccaactttct tgtacaaagt ggttggtaag cctatcccta
1921accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1981agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)

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