Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11285
- Subject:
- XR_001781126.1
- Aligned Length:
- 5927
- Identities:
- 600
- Gaps:
- 5276
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTGTCCCCGGGAGGGGAAAAGAGGACGAGGTAAAGAGAAGTGGTCTAAATAGGACAGGGGGCAAGGAAGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGGGGGCATGAGGGTCAAAAGTAGTGAAGCTCTTTTGGGGCGCACCGCACTTCCCCCCTCTAGGCCTTTGCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCGCCCTCTCCGCCGCGGACACTGGAGAGTTAAGCCAATAAACACGTAAGCGCCGCTCGCTCCCCAATCGGCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GATGCCTCTCCTGCTCTTGGCTGCATCGACAGCTTGCAACACTCGGCATCTTTTCTGGAGGCGCCTTCTTCAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCTGCAGATGGCATCCGGCTGCGGGCTCCGGGCTCGCAATTGATTCTCGCCCTTGCCCACCTCGGGTGCACAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACGCACCTCTCCCTTCTCCTCCTCCCCTCGCGCTCCTGGGTCTGCGCTCAGCTCGCGCTCGCCGGGCGGAGGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAGTCGCGGCGGCCGAAGCTGAGCAGCAGCGCTCGCTCTCCCTGACCTAGGAAGAAGCGCCTACCCGGACAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGACCCTTGGCTGCCTCCAGCGCCCCCCACCTTTTGCACCCCAAGGCGGGGGCTCCGGGGACCCCCCTCTCCCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGCGCTACCATGCTGGACCCTTCGTCCAGCGAAGAGGAGTCAGATGAGATCCTGGAAGAGGAGAGGGGCAAGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGTGCTGGGCTCGGCCGCGTCTGGAGCGCGCCTGTCTCCCAGCCGCACCAGCGAGGGCTCGGCAGGCAGCGCCG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGATGGGGGGCAGTGGCGCCGGGGCCGGGGTGGGCGCCGGCGGCGGTGGGGGTAGCGGCGCGAGCAGCGGCGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGGGCCGGGGGGCTGCAGCCCAGCAGCCGCGCCGGCGGCGGCCGGCCTTCCAGCCCTAGCCCGTCGGTGGTGAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGAGAAGGAGAAGGAAGAGTTGGAGAGGCTGCAGAAGGAGGAGGAAGAGAGGAAGAAGAGGCTGCAGCTGTACG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGTTCGTGATGCGCTGCATCGCCTACCCCTTCAACGCCAAGCAGCCCACCGACATGGCTCGGCGGCAGCAGAAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCAGCAAACAGCAGCTACAGACTGTCAAAGACCGGTTCCAGGCTTTTCTCAATGGGGAGACCCAAATCGTAGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGATGAAGCCTTTATGAATGCTGTCCAGAGCTACTATGAGGTGTTTCTCAAGAGTGACCGTGTGGCCCGCATGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGCAGAGTGGGGGCTGCTCAGCCAATGACTCTCGGGAGGTCTTCAAGAAACACATCGAGAAGAGGGTGCGCAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTACCTGAGATTGACGGCCTCAGCAAGGAGACAGTGCTAAGCTCTTGGATGGCCAAGTTTGATGCCATCTACCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGGTGAGGAGGACCCCAGGAAGCAGCAAGCCCGGATGACAGCCAGTGCAGCTTCTGAGTTGATTCTGAGCAAGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AACAGCTCTATGAGATGTTTCAGAACATTCTTGGGATCAAGAAGTTTGAACATCAACTCCTGTATAATGCCTGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAGCTGGACAATCCAGATGAGCAGGCAGCCCAGATCAGACGAGAGCTGGATGGACGTCTCCAAATGGCAGATCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATAGCCAGGGAACGCAAATTTCCTAAGTTCGTATCCAAAGAAATGGAAAACATGTACATTGAGGAGCTGAAGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCTCCGTCAACCTGCTCATGGCCAACTTGGAGAGCATGCCGGTGTCCAAGGGTGGAGAGTTCAAGCTACAGAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTGAAACGCAGTCACAATGCTTCCATCATTGACATGGGTGAGGAGAGTGAGAACCAGCTTTCTAAGTCAGATGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCTGCTGTCCTTCTCCTTGGAGGTGGTGATCATGGAAGTCCAAGGCCTTAAGTCCTTGGCTCCAAATCGAATTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATACTGCACAATGGAGGTGGAGGGTGGAGAGAAACTTCAGACAGATCAAGCAGAGGCTTCTAAACCAACCTGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGCACTCAAGGCGACTTCTCCACAACCCATGCGCTGCCAGCTGTTAAAGTAAAACTATTCACAGAGAGCACTGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGTCCTGGCCTTGGAAGACAAGGAACTCGGGCGGGTGATCCTCCATCCCACCCCAAATAGCCCCAAACAATCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGTGGCACAAAATGACAGTCTCCAAAAACTGCCCCGATCAAGACCTCAAAATCAAACTTGCTGTCCGAATGGAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAGCCTCAAAACATGAAGCACTCTGGGTACTTATGGACCATTGGTAAGAATGTGTGGAAGAGGTGGAAGAAGAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GTTCTTTGTGTTGGTGCAGGTCAGCCAGTACACTTTTGCCATGTGCAGCTATCGAGAAAAGAAGGCAGAGCCTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGGAACTCCTACAGCTGGACGGCTACACCGTGGATTACACCGACCCTCAGCCAGGTTTGGAGGGTGGCCGAGCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTCTTCAATGCAGTCAAAGAAGGAGACACGGTGATATTTGCAAGTGATGATGAACAAGATCGAATTTTGTGGGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCAAGCTATGTACAGGGCCACTGGCCAGTCGCACAAACCTGTTCCCCCTACCCAGGTGCAGAAGCTCAACGCCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGGGCGGAAATGTGCCTCAGCTGGATGCCCCCATCTCACAATTTTCTGGACTGAAGGACGCAGATAGAGCTCAG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAGCATGGCATGGATGAATTTATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTGCA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCGGCTGACTTTGGATCACAGACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTTAGATGAGTATTGCGCCAGAAATGGAGTCCGAGGATGTCACCGGCATCTCTGCTACCTTAGAGACTTGCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAACGAGCAGAAAATGGCGCGATGATTGACCCCACGCTTCTTCACTACAGCTTTGCCTTCTGCGCGTCCCATGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCATGGTAACAGGCCTGATGGAATCGGAACTGTGACTGTTGAAGAAAAAGAACGCTTTGAAGAAATCAAAGAGA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GACTCCGAGTTCTGCTGGAAAATCAAATTACACATTTCAGGTACTGCTTTCCATTTGGTCGACCTGAAGGTGCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTGAAAGCTACTCTCTCACTCTTGGAACGGGTTTTGATGAAAGATATTGTCACTCCAGTACCACAAGAAGAGGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CAAAACTGTCATCCGTAAATGCCTAGAGCAGGCTGCTCTAGTCAACTACTCACGCCTATCTGAGTATGCCAAAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTGAAGGGAAAAAGAGAGAAATGTATGAGCATCCTGTCTTCTGCTTGGCCTCCCAAGTGATGGATTTAACCATT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CAGAATCAAAAGGATGCAGAAAATGTAGGCCGCTTAATCACTCCCGCCAAAAAGCTCGAAGACACAATCCGTCT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TGCTGAACTAGTCATCGAAGTACTGCAACAAAACGAGGAGCACCACGCCGAGGGGAAAGAGCCACATGTTGATA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAGGAGAAGCCTTTGCGTGGTGGTCAGACTTAATGGTGGAGCATGCGGAGACGTTCCTGTCACTCTTTGCAGTG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GACATGGATGCAGCCTTAGAGGTGCAACCCCCAGACACGTGGGACAGTTTCCCACTCTTCCAGCTGCTGAATGA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTTTCTCCGTACAGACTATAATTTGTGCAATGGAAAGTTTCACAAACACCTGCAGGACCTGTTCGCCCCACTTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TTGTTAGATATGTGGATCTGATGGAGTCCTCCATTGCACAATCTATCCACAGGGGCTTTGAGCGGGAGTCATGG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GAGCCAGTCAAGAGTTTAACCAGTAACCTACCCAATGTGAACCTACCCAATGTGAACCTACCCAAAGTACCAAA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCTACCAGTTAACATCCCTCTAGGCATCCCACAGATGCCCACTTTTTCGGCACCGTCATGGATGGCTGCTATAT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ATGATGCTGATAATGGATCAGGTACATCAGAAGATTTGTTCTGGAAACTTGATGCCCTTCAGACTTTCATCCGT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GACCTACACTGGCCTGAGGAAGAGTTTGGAAAACACTTAGAGCAGCGGCTAAAACTGATGGCAAGTGACATGAT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGAGTCCTGCGTCAAAAGAACCAGGATTGCATTTGAAGTTAAGCTGCAAAAAACCAGTCGATCAACAGATTTTC 4070
Query 1 -----------------------ATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGC 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 GAGTCCCACAGTCAATATGCACCATGTTTAATGTTATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGC 4144
Query 52 ATGGAAATGGGCCAAGAGTTTGCTAAAATGTGGCATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAAC 125
||||||||||||||||| ||||||||||||||||||||||||.|||||||||||||||||
Sbjct 4145 ATGGAAATGGGCCAAGA---------------GCATCAATACCATTCAAAAATAGATGAACTAATTGAAGAAAC 4203
Query 126 TGTTAAAGAAATGATAACACTCTTGGTTGCAAAGTTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCA 199
.||||||||||||||.|||||.|||||.||||||||.||.|||||.||||||||.||.||||||||.|||||||
Sbjct 4204 CGTTAAAGAAATGATCACACTTTTGGTGGCAAAGTTTGTAACTATATTGGAAGGCGTACTGGCAAAGTTATCCA 4277
Query 200 GATATGACGAAGGGACTTTGTTTTCTTCTTTTCTGTCATT---------------------------------- 239
||||||||||.|||||||||||||||||.|||||||||||
Sbjct 4278 GATATGACGAGGGGACTTTGTTTTCTTCGTTTCTGTCATTCACGAGCACCCTGAAACATGTCTGTCACTTTGGT 4351
Query 240 -------------------------------------------------------------------------- 239
Sbjct 4352 AATGATCAGAAATGGAGCAAAGAGTTAACCTCTGTCCAGAAGGAACTGTGGTTGCAGAAGCAATTGGAGGCATA 4425
Query 240 ---TACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACGTGGCCGACGCCTACGTGA 310
||..|||||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||||
Sbjct 4426 GAGTAGGGTGAAGGCAGCTTCCAAGTATGTGGACGTGCCTAAACCCGGGATGGACGTGGCCGACGCCTACGTGA 4499
Query 311 CTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAATGAGGAGATGTACATAGAAAGGTTATTTGAT 384
||||||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 4500 CTTTCGTCCGCCATTCTCAGGATGTCCTTCGTGATAAGGTCAATGAGGAGATGTATATAGAAAGGTTATTTGAT 4573
Query 385 CAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGACGGACCGGATGGACTTACAGCTTCATATTTA 458
||||||||||||||||||||||||.|.||||||||.|||.||||.|||.||||||||.|.|||||.||.|||||
Sbjct 4574 CAATGGTACAACAGCTCCATGAACATCATCTGCACGTGGCTGACCGACAGGATGGACCTGCAGCTCCACATTTA 4647
Query 459 TCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGAGATTTCCGATTGCAAGGGGTCCTGGACTCCA 532
.|||.|||||||.||.||.||||||||||||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 4648 CCAGCTGAAAACCCTGATCAGGATGGTAAAGAAAACCTATAGAGATTTCCGATTGCAAGGGGTCCTGGATTCCA 4721
Query 533 CCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCACTGTGGAGGAAGCCACAGCATCAGTGAGTGAA 606
||||||||||||||||||||||.||.|||||.|||||||||||||||||||||||.|||||.|||||||||||.
Sbjct 4722 CCTTAAACAGCAAGACCTATGAGACCATCCGAAACCGTCTCACTGTGGAGGAAGCTACAGCGTCAGTGAGTGAG 4795
Query 607 GGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGGAAGACGAAGAAGACGAT-------------- 666
||||||||..|.||.||.|||||||||||||||||.|||||||||||.||||||||.|||
Sbjct 4796 GGTGGGGGCTTACAAGGTATCAGCATGAAGGACAGTGATGAGGAAGATGAAGAAGATGATTAGACCATTCTCTG 4869
Query 667 -------------------------------------------------------------------------- 666
Sbjct 4870 GGTCCAAGAGTCCATTGGGATGGAGTCCTGTAATCAATGCATGTCTTTAGTCTGTTAGTTAACCCCATTAGGTA 4943
Query 667 -------------------------------------------------------------------------- 666
Sbjct 4944 ATTTTCTGTCAACCACCATCCCCATGAGATGTTTACCAATACAATTACCATTTTAGCTGCGTGGTACCAAGATT 5017
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5018 AGCAAATGGTTTCCTGATTTCTGTGTCTATATGTTTACAAGCAATATGGAACACCATTCTTAAACACTGTTCAT 5091
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5092 GGAAAGAATACATAGTTCAGCTGCTAGGTGTGTCCCTTTTGTTAGCAGAACAAAATGATGCTTCATCCTGTACT 5165
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5166 ACAGATACACGGATTGGAAGTGGACATGGAAGCAAGTGTGTTTCCATGTCTCTGTTTCATGTATGTGGGTACCA 5239
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5240 GGTATTTAAATTAGTACATAAATTAATTTAAGTGCATAGAGCTGCTTGGTTTTGGTCTCTGTTTTGTTCTTGTT 5313
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5314 TTATGAGAAGGGGAAAAGGCATGGTCCCAAAAACCAACTTTAGCTTTTCTCATCCCCTAAAACTAAAAGCAATG 5387
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5388 GACCACTTGTGTCCCAGCAAACCCAGCTTTGCATTTATCCATGTAGTTTAGTTCCCCCTACCAAAAAAGTTACA 5461
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5462 TATCAATGGATTAATTATTTTCATTGTCATAGCAAGGGGGCCACGTGATCAGGAAGTAGCATCAAGTAAGTTTC 5535
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5536 AGACCAACTGTCTTCTGTGAAAGTTTATCCTAGTAAATGTCACATTTTGCTTTTCTGTTTCAATAACTGTATAT 5609
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5610 GTAAAAAAAATTATTGAAATGAAAACCCTAGACTATAAATGTATTTATAATAAGATATGGATATTTCCTTCAGT 5683
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5684 AGACTGTAACCATAACTTCAATTATTTTGTTCCACACTGTTTTTTATATCTGTCATGTACATTGCACTTTGATC 5757
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5758 TGTAACTGAGCGACCCTGGGGTCTGCTATAGAGCTGTTTCTTTCTGTGGAAAGTAGTGGATCCATCTTGCTTTT 5831
Query 667 -------------------------------------------------------------------------- 666
Sbjct 5832 TGCCTTATATAAAAGCCTACAGTTGTAAAAGTGTGGGAAACTGTGGCTCCTCAATAAATAATTATTCAAATGTC 5905
Query 667 ------- 666
Sbjct 5906 CTAAGAA 5912
