Construct: ORF ccsbBroad304_11285

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005436.1_s304c1, BRDN0000402849
Derived from:
ccsbBroadEn_11285
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CADPS (8618)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11285
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8618 CADPS calcium dependent secretion... XM_011534199.2 17.1% 17.1% 1_3222del
2 human 8618 CADPS calcium dependent secretion... NM_183393.3 16.9% 16.9% 1_3171del;3239_3240insGTTTGCTAAAATGTG
3 human 8618 CADPS calcium dependent secretion... XM_011534200.3 16.7% 16.7% 1_3222del;3290_3291insGTTTGCTAAAATGTG
4 human 8618 CADPS calcium dependent secretion... XM_006713378.3 16.6% 16.6% 1_3234del;3302_3303insGTTTGCTAAAATGTG
5 human 8618 CADPS calcium dependent secretion... XM_011534198.3 16.6% 16.6% 1_3240del;3308_3309insGTTTGCTAAAATGTG
6 human 8618 CADPS calcium dependent secretion... XM_017007386.2 16.6% 16.6% 1_3252del;3320_3321insGTTTGCTAAAATGTG
7 human 8618 CADPS calcium dependent secretion... XM_017007385.2 16.5% 16.5% 1_3261del;3329_3330insGTTTGCTAAAATGTG
8 human 8618 CADPS calcium dependent secretion... XM_017007384.2 16.5% 16.5% 1_3273del;3341_3342insGTTTGCTAAAATGTG
9 human 8618 CADPS calcium dependent secretion... XM_017007378.1 16.5% 16.5% 1_3369del
10 human 8618 CADPS calcium dependent secretion... NM_183394.3 16.4% 16.4% 1_3291del;3359_3360insGTTTGCTAAAATGTG
11 human 8618 CADPS calcium dependent secretion... XM_011534196.2 16.4% 16.4% 1_3390del
12 human 8618 CADPS calcium dependent secretion... XM_011534195.2 16.4% 16.4% 1_3393del
13 human 8618 CADPS calcium dependent secretion... XM_017007383.2 16.4% 16.4% 1_3303del;3371_3372insGTTTGCTAAAATGTG
14 human 8618 CADPS calcium dependent secretion... XM_017007372.1 16.3% 16.3% 1_3396del
15 human 8618 CADPS calcium dependent secretion... XM_024453802.1 16.3% 16.3% 1_3399del
16 human 8618 CADPS calcium dependent secretion... XM_011534193.2 16.3% 16.3% 1_3408del
17 human 8618 CADPS calcium dependent secretion... XM_017007380.2 16.3% 16.3% 1_3324del;3392_3393insGTTTGCTAAAATGTG
18 human 8618 CADPS calcium dependent secretion... XM_011534192.2 16.2% 16.2% 1_3420del
19 human 8618 CADPS calcium dependent secretion... XM_017007369.2 16.2% 16.2% 1_3420del
20 human 8618 CADPS calcium dependent secretion... XM_017007368.1 16.2% 16.2% 1_3438del
21 human 8618 CADPS calcium dependent secretion... XM_011534189.2 16.1% 16.1% 1_3462del
22 human 8618 CADPS calcium dependent secretion... XM_024453801.1 16.1% 16.1% 1_3468del
23 human 8618 CADPS calcium dependent secretion... XM_011534197.2 16% 16% 1_3381del;3449_3450insGTTTGCTAAAATGTG
24 human 8618 CADPS calcium dependent secretion... XM_017007379.2 16% 16% 1_3381del;3449_3450insGTTTGCTAAAATGTG
25 human 8618 CADPS calcium dependent secretion... XM_024453799.1 16% 16% 1_3480del
26 human 8618 CADPS calcium dependent secretion... XM_017007377.2 16% 16% 1_3387del;3455_3456insGTTTGCTAAAATGTG
27 human 8618 CADPS calcium dependent secretion... XM_011534203.2 16% 16% 1_3390del;3458_3459insGTTTGCTAAAATGTG
28 human 8618 CADPS calcium dependent secretion... XM_017007376.2 16% 16% 1_3393del;3461_3462insGTTTGCTAAAATGTG
29 human 8618 CADPS calcium dependent secretion... XM_017007375.1 16% 16% 1_3396del;3464_3465insGTTTGCTAAAATGTG
30 human 8618 CADPS calcium dependent secretion... XM_017007374.2 16% 16% 1_3399del;3467_3468insGTTTGCTAAAATGTG
31 human 8618 CADPS calcium dependent secretion... NM_003716.4 15.9% 15.9% 1_3408del;3476_3477insGTTTGCTAAAATGTG
32 human 8618 CADPS calcium dependent secretion... XM_017007373.2 15.9% 15.9% 1_3408del;3476_3477insGTTTGCTAAAATGTG
33 human 8618 CADPS calcium dependent secretion... XM_017007371.2 15.9% 15.9% 1_3411del;3479_3480insGTTTGCTAAAATGTG
34 human 8618 CADPS calcium dependent secretion... XM_011534194.2 15.9% 15.9% 1_3420del;3488_3489insGTTTGCTAAAATGTG
35 human 8618 CADPS calcium dependent secretion... XM_017007370.2 15.9% 15.9% 1_3420del;3488_3489insGTTTGCTAAAATGTG
36 human 8618 CADPS calcium dependent secretion... XM_011534191.3 15.8% 15.8% 1_3438del;3506_3507insGTTTGCTAAAATGTG
37 human 8618 CADPS calcium dependent secretion... XM_011534183.2 15.8% 15.8% 1_3540del
38 human 8618 CADPS calcium dependent secretion... XM_017007366.2 15.7% 15.7% 1_3462del;3530_3531insGTTTGCTAAAATGTG
39 human 8618 CADPS calcium dependent secretion... XM_011534182.2 15.7% 15.7% 1_3558del
40 human 8618 CADPS calcium dependent secretion... XM_017007364.2 15.7% 15.7% 1_3480del;3548_3549insGTTTGCTAAAATGTG
41 human 8618 CADPS calcium dependent secretion... XM_011534180.2 15.6% 15.6% 1_3579del
42 human 8618 CADPS calcium dependent secretion... XM_024453800.1 15.6% 15.6% 1_3489del;3557_3558insGTTTGCTAAAATGTG
43 human 8618 CADPS calcium dependent secretion... XM_011534178.2 15.5% 15.5% 1_3609del
44 human 8618 CADPS calcium dependent secretion... XM_011534177.2 15.5% 15.5% 1_3627del
45 human 8618 CADPS calcium dependent secretion... XM_017007363.2 15.4% 15.4% 1_3558del;3626_3627insGTTTGCTAAAATGTG
46 human 8618 CADPS calcium dependent secretion... XM_017007362.2 15.3% 15.3% 1_3567del;3635_3636insGTTTGCTAAAATGTG
47 human 8618 CADPS calcium dependent secretion... XM_017007361.2 15.3% 15.3% 1_3579del;3647_3648insGTTTGCTAAAATGTG
48 human 8618 CADPS calcium dependent secretion... XM_017007360.2 15.1% 15.1% 1_3627del;3695_3696insGTTTGCTAAAATGTG
49 human 8618 CADPS calcium dependent secretion... XM_017007359.2 15.1% 15.1% 1_3636del;3704_3705insGTTTGCTAAAATGTG
50 human 8618 CADPS calcium dependent secretion... XM_017007358.2 15% 15% 1_3648del;3716_3717insGTTTGCTAAAATGTG
51 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518044.3 15.4% 16.6% (many diffs)
52 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518043.3 15.4% 16.6% (many diffs)
53 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316038.1 15.3% 16.6% (many diffs)
54 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518041.3 15.1% 16.4% (many diffs)
55 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316037.1 15.1% 16.3% (many diffs)
56 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316036.1 15.1% 16.3% (many diffs)
57 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316035.1 15% 16.2% (many diffs)
58 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518040.3 15% 16.2% (many diffs)
59 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316034.1 15% 16.2% (many diffs)
60 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518039.3 14.9% 16.1% (many diffs)
61 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518048.3 14.8% 16% (many diffs)
62 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518036.3 14.8% 16% (many diffs)
63 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316033.1 14.8% 16% (many diffs)
64 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316032.1 14.7% 15.9% (many diffs)
65 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518034.3 14.7% 15.9% (many diffs)
66 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518035.3 14.7% 15.9% (many diffs)
67 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518033.3 14.7% 15.9% (many diffs)
68 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316031.1 14.7% 15.8% (many diffs)
69 mouse 27062 Cadps Ca2+-dependent secretion ac... NM_001042617.1 14.7% 15.8% (many diffs)
70 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518032.3 14.6% 15.8% (many diffs)
71 mouse 27062 Cadps Ca2+-dependent secretion ac... NM_012061.3 14.6% 15.8% (many diffs)
72 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518031.3 14.5% 15.7% (many diffs)
73 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316030.1 14.5% 15.7% (many diffs)
74 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518029.3 14.5% 15.6% (many diffs)
75 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_017316029.1 14.5% 15.6% (many diffs)
76 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518028.3 14.5% 15.6% (many diffs)
77 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518027.3 14.4% 15.6% (many diffs)
78 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518026.3 14.4% 15.6% (many diffs)
79 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518025.3 14.4% 15.6% (many diffs)
80 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518024.3 14.4% 15.5% (many diffs)
81 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518030.3 13.7% 14.7% (many diffs)
82 mouse 27062 Cadps Ca2+-dependent secretion ac... XR_001781126.1 10.1% (many diffs)
83 mouse 27062 Cadps Ca2+-dependent secretion ac... XM_006518042.3 9.8% 8.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
732
ORF length:
666
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61gtggcatgtt taatgttatg gttgatgcca aagctcaatc aacaaaactt tgcagcatgg
121aaatgggcca agagtttgct aaaatgtggc atcaatacca ttcaaaaata gacgaactaa
181ttgaagaaac tgttaaagaa atgataacac tcttggttgc aaagttcgtt actatcttgg
241aaggagtgct ggcaaaatta tccagatatg acgaagggac tttgttttct tcttttctgt
301catttaccgt gaaggcagct tccaaatatg tggatgtacc taaacccggg atggacgtgg
361ccgacgccta cgtgactttc gtccgccatt ctcaggatgt cctgcgtgat aaggtcaatg
421aggagatgta catagaaagg ttatttgatc aatggtacaa cagctccatg aacgtgatct
481gcacctggtt gacggaccgg atggacttac agcttcatat ttatcagttg aaaacactaa
541ttaggatggt aaagaaaacc tacagagatt tccgattgca aggggtcctg gactccacct
601taaacagcaa gacctatgaa acgatccgga accgtctcac tgtggaggaa gccacagcat
661cagtgagtga aggtggggga ctgcagggca tcagcatgaa ggacagcgat gaggaagacg
721aagaagacga ttacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
781tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
841caatcaacct ctggatta

Download FASTA (ORF) (Full)

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