Construct: ORF ccsbBroad304_11285
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005436.1_s304c1, BRDN0000402849
- Derived from:
- ccsbBroadEn_11285
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CADPS (8618)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11285
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534199.2 | 17.1% | 17.1% | 1_3222del |
| 2 | human | 8618 | CADPS | calcium dependent secretion... | NM_183393.3 | 16.9% | 16.9% | 1_3171del;3239_3240insGTTTGCTAAAATGTG |
| 3 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534200.3 | 16.7% | 16.7% | 1_3222del;3290_3291insGTTTGCTAAAATGTG |
| 4 | human | 8618 | CADPS | calcium dependent secretion... | XM_006713378.3 | 16.6% | 16.6% | 1_3234del;3302_3303insGTTTGCTAAAATGTG |
| 5 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534198.3 | 16.6% | 16.6% | 1_3240del;3308_3309insGTTTGCTAAAATGTG |
| 6 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007386.2 | 16.6% | 16.6% | 1_3252del;3320_3321insGTTTGCTAAAATGTG |
| 7 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007385.2 | 16.5% | 16.5% | 1_3261del;3329_3330insGTTTGCTAAAATGTG |
| 8 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007384.2 | 16.5% | 16.5% | 1_3273del;3341_3342insGTTTGCTAAAATGTG |
| 9 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007378.1 | 16.5% | 16.5% | 1_3369del |
| 10 | human | 8618 | CADPS | calcium dependent secretion... | NM_183394.3 | 16.4% | 16.4% | 1_3291del;3359_3360insGTTTGCTAAAATGTG |
| 11 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534196.2 | 16.4% | 16.4% | 1_3390del |
| 12 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534195.2 | 16.4% | 16.4% | 1_3393del |
| 13 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007383.2 | 16.4% | 16.4% | 1_3303del;3371_3372insGTTTGCTAAAATGTG |
| 14 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007372.1 | 16.3% | 16.3% | 1_3396del |
| 15 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453802.1 | 16.3% | 16.3% | 1_3399del |
| 16 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534193.2 | 16.3% | 16.3% | 1_3408del |
| 17 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007380.2 | 16.3% | 16.3% | 1_3324del;3392_3393insGTTTGCTAAAATGTG |
| 18 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534192.2 | 16.2% | 16.2% | 1_3420del |
| 19 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007369.2 | 16.2% | 16.2% | 1_3420del |
| 20 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007368.1 | 16.2% | 16.2% | 1_3438del |
| 21 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534189.2 | 16.1% | 16.1% | 1_3462del |
| 22 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453801.1 | 16.1% | 16.1% | 1_3468del |
| 23 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534197.2 | 16% | 16% | 1_3381del;3449_3450insGTTTGCTAAAATGTG |
| 24 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007379.2 | 16% | 16% | 1_3381del;3449_3450insGTTTGCTAAAATGTG |
| 25 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453799.1 | 16% | 16% | 1_3480del |
| 26 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007377.2 | 16% | 16% | 1_3387del;3455_3456insGTTTGCTAAAATGTG |
| 27 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534203.2 | 16% | 16% | 1_3390del;3458_3459insGTTTGCTAAAATGTG |
| 28 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007376.2 | 16% | 16% | 1_3393del;3461_3462insGTTTGCTAAAATGTG |
| 29 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007375.1 | 16% | 16% | 1_3396del;3464_3465insGTTTGCTAAAATGTG |
| 30 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007374.2 | 16% | 16% | 1_3399del;3467_3468insGTTTGCTAAAATGTG |
| 31 | human | 8618 | CADPS | calcium dependent secretion... | NM_003716.4 | 15.9% | 15.9% | 1_3408del;3476_3477insGTTTGCTAAAATGTG |
| 32 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007373.2 | 15.9% | 15.9% | 1_3408del;3476_3477insGTTTGCTAAAATGTG |
| 33 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007371.2 | 15.9% | 15.9% | 1_3411del;3479_3480insGTTTGCTAAAATGTG |
| 34 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534194.2 | 15.9% | 15.9% | 1_3420del;3488_3489insGTTTGCTAAAATGTG |
| 35 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007370.2 | 15.9% | 15.9% | 1_3420del;3488_3489insGTTTGCTAAAATGTG |
| 36 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534191.3 | 15.8% | 15.8% | 1_3438del;3506_3507insGTTTGCTAAAATGTG |
| 37 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534183.2 | 15.8% | 15.8% | 1_3540del |
| 38 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007366.2 | 15.7% | 15.7% | 1_3462del;3530_3531insGTTTGCTAAAATGTG |
| 39 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534182.2 | 15.7% | 15.7% | 1_3558del |
| 40 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007364.2 | 15.7% | 15.7% | 1_3480del;3548_3549insGTTTGCTAAAATGTG |
| 41 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534180.2 | 15.6% | 15.6% | 1_3579del |
| 42 | human | 8618 | CADPS | calcium dependent secretion... | XM_024453800.1 | 15.6% | 15.6% | 1_3489del;3557_3558insGTTTGCTAAAATGTG |
| 43 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534178.2 | 15.5% | 15.5% | 1_3609del |
| 44 | human | 8618 | CADPS | calcium dependent secretion... | XM_011534177.2 | 15.5% | 15.5% | 1_3627del |
| 45 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007363.2 | 15.4% | 15.4% | 1_3558del;3626_3627insGTTTGCTAAAATGTG |
| 46 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007362.2 | 15.3% | 15.3% | 1_3567del;3635_3636insGTTTGCTAAAATGTG |
| 47 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007361.2 | 15.3% | 15.3% | 1_3579del;3647_3648insGTTTGCTAAAATGTG |
| 48 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007360.2 | 15.1% | 15.1% | 1_3627del;3695_3696insGTTTGCTAAAATGTG |
| 49 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007359.2 | 15.1% | 15.1% | 1_3636del;3704_3705insGTTTGCTAAAATGTG |
| 50 | human | 8618 | CADPS | calcium dependent secretion... | XM_017007358.2 | 15% | 15% | 1_3648del;3716_3717insGTTTGCTAAAATGTG |
| 51 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518044.3 | 15.4% | 16.6% | (many diffs) |
| 52 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518043.3 | 15.4% | 16.6% | (many diffs) |
| 53 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316038.1 | 15.3% | 16.6% | (many diffs) |
| 54 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518041.3 | 15.1% | 16.4% | (many diffs) |
| 55 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316037.1 | 15.1% | 16.3% | (many diffs) |
| 56 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316036.1 | 15.1% | 16.3% | (many diffs) |
| 57 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316035.1 | 15% | 16.2% | (many diffs) |
| 58 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518040.3 | 15% | 16.2% | (many diffs) |
| 59 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316034.1 | 15% | 16.2% | (many diffs) |
| 60 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518039.3 | 14.9% | 16.1% | (many diffs) |
| 61 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518048.3 | 14.8% | 16% | (many diffs) |
| 62 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518036.3 | 14.8% | 16% | (many diffs) |
| 63 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316033.1 | 14.8% | 16% | (many diffs) |
| 64 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316032.1 | 14.7% | 15.9% | (many diffs) |
| 65 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518034.3 | 14.7% | 15.9% | (many diffs) |
| 66 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518035.3 | 14.7% | 15.9% | (many diffs) |
| 67 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518033.3 | 14.7% | 15.9% | (many diffs) |
| 68 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316031.1 | 14.7% | 15.8% | (many diffs) |
| 69 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | NM_001042617.1 | 14.7% | 15.8% | (many diffs) |
| 70 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518032.3 | 14.6% | 15.8% | (many diffs) |
| 71 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | NM_012061.3 | 14.6% | 15.8% | (many diffs) |
| 72 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518031.3 | 14.5% | 15.7% | (many diffs) |
| 73 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316030.1 | 14.5% | 15.7% | (many diffs) |
| 74 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518029.3 | 14.5% | 15.6% | (many diffs) |
| 75 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_017316029.1 | 14.5% | 15.6% | (many diffs) |
| 76 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518028.3 | 14.5% | 15.6% | (many diffs) |
| 77 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518027.3 | 14.4% | 15.6% | (many diffs) |
| 78 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518026.3 | 14.4% | 15.6% | (many diffs) |
| 79 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518025.3 | 14.4% | 15.6% | (many diffs) |
| 80 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518024.3 | 14.4% | 15.5% | (many diffs) |
| 81 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518030.3 | 13.7% | 14.7% | (many diffs) |
| 82 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XR_001781126.1 | 10.1% | (many diffs) | |
| 83 | mouse | 27062 | Cadps | Ca2+-dependent secretion ac... | XM_006518042.3 | 9.8% | 8.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 732
- ORF length:
- 666
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 gtggcatgtt taatgttatg gttgatgcca aagctcaatc aacaaaactt tgcagcatgg 121 aaatgggcca agagtttgct aaaatgtggc atcaatacca ttcaaaaata gacgaactaa 181 ttgaagaaac tgttaaagaa atgataacac tcttggttgc aaagttcgtt actatcttgg 241 aaggagtgct ggcaaaatta tccagatatg acgaagggac tttgttttct tcttttctgt 301 catttaccgt gaaggcagct tccaaatatg tggatgtacc taaacccggg atggacgtgg 361 ccgacgccta cgtgactttc gtccgccatt ctcaggatgt cctgcgtgat aaggtcaatg 421 aggagatgta catagaaagg ttatttgatc aatggtacaa cagctccatg aacgtgatct 481 gcacctggtt gacggaccgg atggacttac agcttcatat ttatcagttg aaaacactaa 541 ttaggatggt aaagaaaacc tacagagatt tccgattgca aggggtcctg gactccacct 601 taaacagcaa gacctatgaa acgatccgga accgtctcac tgtggaggaa gccacagcat 661 cagtgagtga aggtggggga ctgcagggca tcagcatgaa ggacagcgat gaggaagacg 721 aagaagacga ttacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 781 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 841 caatcaacct ctggatta