Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12232
- Subject:
- XR_002957461.1
- Aligned Length:
- 2670
- Identities:
- 632
- Gaps:
- 2018
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCGCGCTCCGCTCGGCAGCCTGTGGGACGCGACCGCGGCGCTAGTCTCGTTCCTTTGTGCTGCGGCGGCGGC 74
Query 1 ---------------------------------------------------------------ATGTCGGCGGC 11
|||||||||||
Sbjct 75 TTCTCGAGTCCTCCCCGACGCGTCCTCTAGGCCAGCGAGCCCCGCGCTCTCCGGTGACGGACCATGTCGGCGGC 148
Query 12 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGGAGCGGGCGCGGGCGTAGAGGCGGGCTTCTCCAGCGAGGAGCTGCTCTCGCTCCGTTTCCCGCTGCACCGCG 222
Query 86 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGCCGCGACGGGGACCTGGCCACGCTCTGCTCGCTGCTGCAGCAGACACCCCACGCCCACCTGGCCTCTGAG 296
Query 160 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACTCCTTCTATGGCTGGACGCCCGTGCACTGGGCCGCGCATTTCGGCAAGTTGGAGTGCTTAGTGCAGTTGGT 370
Query 234 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGAGCGGGAGCCACACTCAACGTCTCCACCACACGGTACGCGCAGACGCCAGCCCACATTGCAGCCTTTGGGG 444
Query 308 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACATCCTCAGTGCCTGGTCTGGCTGATTCAAGCAGGAGCCAACATTAACAAACCGGATTGTGAGGGTGAAACT 518
Query 382 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCCATTCACAAGGCAGCTCGCTCTGGGAGCCTAGAATGCATCAGTGCCCTTGTGGCGAATGGGGCTCACGTCGA 592
Query 456 GT--TTATTTCACAGAGCAGTGTAC---ATTCTT----GTCTTCC-----AGGGGAA--CTTCAACATGGAGTT 513
.| .||.||| |.|.|| || |||.|| ||..||| |||||.| .||| |||..||..
Sbjct 593 CTACGTAATTC-----GAATTG-ACTTGATTTTTTCAAGTAATCCTAGAAAGGGGGAGCATTC--CATATAGAA 658
Query 514 ACTTTTGA----------------TC--------CCT--CAGTT------TTAA---TTCAGTGTC-------- 544
|||..||| || ||| ||||| ||.| ||||||.||
Sbjct 659 ACTGCTGAAACTGCCACAGGTGCTTCTCCGAAAACCTTACAGTTGTGGCATTGAATGTTCAGTATCGCTTCCTT 732
Query 545 --------------------TAAAGCCTGAGAAATGCCAGTGGCCTGACAGCAGCAGACATTGCACAAACCCAG 598
|..|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TCTGCACACGAGGCATACTGTTGAGCCTGAGAAATGCCAGTGGCCTGACAGCAGCAGACATTGCACAAACCCAG 806
Query 599 GGTTTCCAAGAGTGTGCCCAGTTTCTCTTGAACCTCCAGAATTGTCATCTGAACCATTTCTA------------ 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GGTTTCCAAGAGTGTGCCCAGTTTCTCTTGAACCTCCAGAATTGTCATCTGAACCATTTCTATAACAATGGCAT 880
Query 661 -------------------------------------------------------------------------- 660
Sbjct 881 CTTAAATGGGGGTCATCAGAATGTATTTCCTAATCATATTAGTGTGGGAACAAATCGAAAGAGATGCTTGGAAG 954
Query 661 -------------------------------------------------------------------------- 660
Sbjct 955 ACTCAGAAGACTTTGGAGTAAAGAAAGCTAGAACTGAAGCTCAAAGCTTGGATTCTGCCGTGCCACTCACGAAT 1028
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1029 GGCGACACAGAAGACGATGCTGACAAAATGCACGTTGATAGGGAGTTTGCTGTTGTAACAGATATGAAAAACAG 1102
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1103 TAGCTCCGTATCGAATACATTGACAAATGGATGTGTCATCAATGGACATTTGGACTTCCCCTCCACGACCCCGC 1176
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1177 TCAGTGGGATGGAAAGCAGGAATGGCCAGTGCTTGACAGGAACTAACGGAATTAGCAGTGGATTAGCCCCAGGA 1250
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1251 CAGCCGTTTCCGAGTAGCCAGGGTTCTCTCTGCATTAGTGGGACTGAGGAGCCAGAGAAGACCCTGAGAGCTAA 1324
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1325 CCCTGAGTTGTGCGGTTCTCTGCACCTGAACGGGAGTCCAAGTAGCTGCATAGCCAGTAGGCCTTCCTGGGTGG 1398
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1399 AAGACATTGGGGATAACCTGTACTATGGACACTACCACGGGTTTGGGGACACTGCTGAAAGCATCCCAGAACTG 1472
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1473 AACAGTGTGGTCGAGCATTCCAAGTCCGTGAAGGTGCAGGAGCGGTACGACAGTGCCGTGCTGGGCACCATGCA 1546
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1547 CCTGCACCACGGCTCCTAGAGACGCTGACCTGGCTCTCGGAAACGCAGGAGTCCTTCCTGGTAGCCAGCTCAGA 1620
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1621 ATACCCATGTAGCAGCAACTTGAACGAATGTCACAACTTGTACGTTTTTTATATACTTCAACTTTCTGAAAAAG 1694
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1695 TAAACTTCGACAAGTTCCCAGCAACTGCTTGTTTGTGCATGAGTAGGGCTTACTAAGTGCATAGATGTTTCTAC 1768
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1769 AGTGAGGTGTCCTTTTTATAAGGTGCACTTTTGGAGTTTTTCTGATGCCAATCTCAACATTGTCTTTTTAATAC 1842
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1843 TGTCACCAGATATTGCCATTTTTCTTTTTGTTAAAAGATTATATGATCAAGATAAATTGGGGTGGTAAATCAGG 1916
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1917 TGCCTGGTAATTTATCTCTTTGCACATGGGCATCATTTTAAAAAGCTTGCTTCCACTCTTTTCTGTAGAATTTG 1990
Query 661 -------------------------------------------------------------------------- 660
Sbjct 1991 ACGGAACACAGCTATTTCCCTATGCAAGGTACAGCCTTACAAAGATTTCTGCAGTGATTTGTGTGAAGAAGAGA 2064
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2065 ACGTTTGTCTTTTTCAATGAAGCTTTGCAGATCACCATGTGGTTGAAGGTTTTAGTTGTGGACACAGTGGTCCC 2138
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2139 TCCTTAATGATGAAGATCACTGCCTTGGGCTTCATGGAAAACAGGCCCAGCCTGGGGCTGCGTTTGGATTTATT 2212
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2213 GTTTTTATTCCACACTTCCTACTTGGTCTCTGGAAGTTTTACCACATGTAACAGATTCCTTTATATGTAGTGGA 2286
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2287 AATCACTATTTGTAGAAACTGTCAGGTCAAAATATTTAACTGACTGTTGACATGTATTTTCTTTTTTCCTTGTT 2360
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2361 TTTGTTTTTTGGGGTTTTCTGCTTTAAGATATATACCACTATGTATATCCAGTTAACTGAGAGAATTTTGACTC 2434
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2435 TCTTAATAAAACTGCATTAAGTTTTTGATTTTGTAGAAATTAGCTTTTGTCTAGGCAACTAGTGGTTATACTCT 2508
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2509 GCAAATATTGTAATGAATTTTTACTTTTTTGATTTTTGTAATAAAAATTGGTGCAGATAAAATGTCAAATGAAC 2582
Query 661 -------------------------------------------------------------------------- 660
Sbjct 2583 AAACCAGTGTTCTAAGAGTGTTACTAACATTTTGTTCTAAAACTGTCCTTCACAAATTGAATAAAAAACTCTCA 2656
Query 661 ------ 660
Sbjct 2657 CACTCA 2662
