Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12277
- Subject:
- XR_001752559.2
- Aligned Length:
- 2528
- Identities:
- 1411
- Gaps:
- 1115
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTGTTAAGACAAAGGGTGTGCACTTCCTGGCCAGGAAACCTGAGCGGTGAGACTCCCAGCTGCCTACATCAAGG 74
Query 1 --------------------------------------------ATGAGGTCCTGCCTGTGGAGATGCAGGCAC 30
||||||||||||||||||||||||||||||
Sbjct 75 CCCCAGGACATGCAGAACCTTCCTCTAGAACCCGACCCACCACCATGAGGTCCTGCCTGTGGAGATGCAGGCAC 148
Query 31 CTGAGCCAAGGCGTCCAGTGGTCCTTGCTTCTGGCTGTCCTGGTCTTCTTTCTCTTCGCCTTGCCCTCTTTTAT 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTGAGCCAAGGCGTCCAGTGGTCCTTGCTTCTGGCTGTCCTGGTCTTCTTTCTCTTCGCCTTGCCCTCTTTTAT 222
Query 105 TAAGGAGCCTCAAACAAAGCCTTCCAG----------------------------------------------- 131
|||||||||||||||||||||||||||
Sbjct 223 TAAGGAGCCTCAAACAAAGCCTTCCAGGATGGTATCAAGGGCTCCAGGACATCTGATGCGGTGCCAAGGCATGG 296
Query 132 -------------------------------------------------------------------------- 131
Sbjct 297 GAGTGGGACGCTGACCCTTCGCTATTGAGTAGCTGCTGAAACAGCCATTGTTCCTGCCCCTTGGCTCTTTCAGG 370
Query 132 ----------------GCATCAACGCACAGAGAACATTAAAGAAAGGTCTCTACAGTCCCTGGCAAAGCCTAAG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCCACCTGGCTTATGTGCATCAACGCACAGAGAACATTAAAGAAAGGTCTCTACAGTCCCTGGCAAAGCCTAAG 444
Query 190 TCCCAGGCACCCACAAGGGCAAGGAGGACAACCATCTATGCAGAGCCAGTGCCAGAGAACAATGCCCTCAACAC 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCCCAGGCACCCACAAGGGCAAGGAGGACAACCATCTATGCAGAGCCAGTGCCAGAGAACAATGCCCTCAACAC 518
Query 264 ACAAACCCAGCCCAAGGCCCACACCACCGGAGACAGAGGAAAGGAGGCCAACCAGGCACCGCCGGAGGAGCAGG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACAAACCCAGCCCAAGGCCCACACCACCGGAGACAGAGGAAAGGAGGCCAACCAGGCACCGCCGGAGGAGCAGG 592
Query 338 ACAAGGTGCCCCACACAGCACAGAGGGCAGCATGGAAGAGCCCAGAAAAAGAGAAAACCATGGTGAACACACTG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACAAGGTGCCCCACACAGCACAGAGGGCAGCATGGAAGAGCCCAGAAAAAGAGAAAACCATGGTGAACACACTG 666
Query 412 TCACCCAGAGGGCAAGATGCAGGGATGGCCTCTGGCAGGACAGAGGCACAATCATGGAAGAGCCAGGACACAAA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCACCCAGAGGGCAAGATGCAGGGATGGCCTCTGGCAGGACAGAGGCACAATCATGGAAGAGCCAGGACACAAA 740
Query 486 GACGACCAAAGGAAATGGGGGCCAGACCAGGAAGCTGACGGCCTCCAGGACGGTGTCAGAGAAGCACCAGGGCA 559
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GACGACCCAAGGAAATGGGGGCCAGACCAGGAAGCTGACGGCCTCCAGGACGGTGTCAGAGAAGCACCAGGGCA 814
Query 560 AAGCGGCAACCACAGCCAAGACGCTCATTCCCAAAAGTCAGCACAGAATGCTGGCTCCCACAGGAGCAGTGTCA 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGCGGCAACCACAGCCAAGACGCTCATTCCCAAAAGTCAGCACAGAATGCTGGCTCCCACAGGAGCAGTGTCA 888
Query 634 ACAAGGACGAGACAGAAAGGAGTGACCACAGCAGTCATCCCACCTAAGGAGAAGAAACCTCAGGCCACCCCACC 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACAAGGACGAGACAGAAAGGAGTGACCACAGCAGTCATCCCACCTAAGGAGAAGAAACCTCAGGCCACCCCACC 962
Query 708 CCCTGCCCCTTTCCAGAGCCCCACGACGCAGAGAAACCAAAGACTGAAGGCCGCCAACTTCAAATCTGAGCCTC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCCTGCCCCTTTCCAGAGCCCCACGACGCAGAGAAACCAAAGACTGAAGGCCGCCAACTTCAAATCTGAGCCTC 1036
Query 782 GGTGGGATTTTGAGGAAAAATACAGCTTCGAAATAGGAGGCCTTCAGACGACTTGCCCTGACTCTGTGAAGATC 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGTGGGATTTTGAGGAAAAATACAGCTTCGAAATAGGAGGCCTTCAGACGACTTGCCCTGACTCTGTGAAGATC 1110
Query 856 AAAGCCTCCAAGTCGCTGTGGCTCCAGAAACTCTTTCTGCCCAACCTCACTCTCTTCCTGGACTCCAGACACTT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAAGCCTCCAAGTCGCTGTGGCTCCAGAAACTCTTTCTGCCCAACCTCACTCTCTTCCTGGACTCCAGACACTT 1184
Query 930 CAACCAGAGTGAGTGGGACCGCCTGGAACACTTTGCACCACCCTTTGGCTTCATGGAGCTCAACTACTCCTTGG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CAACCAGAGTGAGTGGGACCGCCTGGAACACTTTGCACCACCCTTTGGCTTCATGGAGCTCAACTACTCCTTGG 1258
Query 1004 TGCAGAAGGTCGTGACACGCTTCCCTCCAGTGCCCCAGCAGCAGCTGCTCCTGGCCAGCCTCCCCGCTGGGAGC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGCAGAAGGTCGTGACACGCTTCCCTCCAGTGCCCCAGCAGCAGCTGCTCCTGGCCAGCCTCCCCGCTGGGAGC 1332
Query 1078 CTCCGGTGCATCACCTGTGCCGTGGTGGGCAACGGGGGCATCCTGAACAACTCCCACATAGGCCAGGAGATAGA 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1333 CTCCGGTGCATCACCTGTGCCGTGGTGGGCAACGGGGGCATCCTGAACAACTCCCACATGGGCCAGGAGATAGA 1406
Query 1152 CAGTCACGACTACGTGTTCCGATTGAGCGGAGCTCTCATTAAAGGCTACGAACAGGATGTGGGGACTCGGACAT 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CAGTCACGACTACGTGTTCCGATTGAGCGGAGCTCTCATTAAAGGCTACGAACAGGATGTGGGGACTCGGACAT 1480
Query 1226 CCTTCTACGGCTTTACCGCCTTCTCCCTGACCCAGTCACTCCTTATATTGGGCAATCGGGGTTTCAAGAACGTG 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCTTCTACGGCTTTACCGCCTTCTCCCTGACCCAGTCACTCCTTATATTGGGCAATCGGGGTTTCAAGAACGTG 1554
Query 1300 CCTCTTGGGAAGGCACAGACCCCAGGAAGCTTTTCGGGAAGCCCTGCACATGGACAGGTACCTGTTGCTGCACC 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCTCTTGGGAAGGCACAGACCCCAGGAAGCTTTTCGGGAAGCCCTGCACATGGACAGGTACCTGTTGCTGCACC 1628
Query 1374 CAGACTTTCTCCGATACATGAAGAACAGGTTTCTGAGGTC---------------------------------- 1413
||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CAGACTTTCTCCGATACATGAAGAACAGGTTTCTGAGGTCTAAGACCCTGGATGGTGCCCACTGGAGGATATAC 1702
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 1703 CGCCCCACCACTGGGGCCCTCCTGCTGCTCACTGCCCTTCAGCTCTGTGACCAGGTGAGTGCTTATGGCTTCAT 1776
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 1777 CACTGAGGGCCATGAGCGCTTTTCTGATCACTACTATGATACATCATGGAAGCGGCTGATCTTTTACATAAACC 1850
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 1851 ATGACTTCAAGCTGGAGAGAGAAGTCTGGAAGCGGCTACACGATGAAGGGATAATCCGGCTGTACCAGCGTCCT 1924
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 1925 GGTCCCGGAACTGCCAAAGCCAAGAACTGACCGGGGCCAGGGCTGCCATGGTCTCCTTGCCTGCTCCAAGGCAC 1998
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 1999 AGGATACAGTGGGAATCTTGAGACTCTTTGGCCATTTCCCATGGCTCAGACTAAGCTCCAAGCCCTTCAGGAGT 2072
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 2073 TCCAAGGGAACACTTGAACCATGGACAAGACTCTCTCAAGATGGCAAATGGCTAATTGAGGTTCTGAAGTTCTT 2146
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 2147 CAGTACATTGCTGTAGGTCCTGAGGCCAGGGATTTTTAATTAAATGGGGTGATGGGTGGCCAATACCACAATTC 2220
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 2221 CTGCTGAAAAACACTCTTCCAGTCCAAAAGCTTCTTGATACAGAAAAAAGAGCCTGGATTTACAGAAACATATA 2294
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 2295 GATCTGGTTTGAATTCCAGATCGAGTTTACAGTTGTGAAATCTTGAAGGTATTACTTAACTTCACTACAGATTG 2368
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 2369 TCTAGAAGACCTTTCTAGGAGTTATCTGATTCTAGAAGGGTCTATACTTGTCCTTGTCTTTAAGCTATTTGACA 2442
Query 1414 -------------------------------------------------------------------------- 1413
Sbjct 2443 ACTCTACGTGTTGTAGAAAACTGATAATAATACAAATGATTGTTGTCCATGGAAAGGCAAATAAATTTTCTACA 2516
Query 1414 ------------ 1413
Sbjct 2517 GTGAAGATGCAA 2528
