Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12358
- Subject:
- NM_001242411.1
- Aligned Length:
- 3202
- Identities:
- 1247
- Gaps:
- 1781
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCCACCCCGAGCAGATTCAAGAAGGACAAAGAGATCATAGCCGAGTATGAAAGTCAAGTCAAAGAAATCCG 74
Query 1 ----------------------------------------------ATGCGAGTTCAGCTTCTCCAGGATCTGC 28
||||||||||||||.||||||||.||.|
Sbjct 75 AGCCCAGCTGGTAGAACAACAAAAATGCCTGGAGCAGCAGACAGAGATGCGAGTTCAGCTGCTCCAGGACCTAC 148
Query 29 AAGATTTCTTCCGAAAAAAAGCTGAAATTGAGACGGAATATTCCCGGAATCTAGAGAAGTTAGCAGAAAGGTTC 102
|||||||||||||.||||||||.||||||||||||||||||||.|||||.||.||||||.|.||||||||||||
Sbjct 149 AAGATTTCTTCCGGAAAAAAGCCGAAATTGAGACGGAATATTCTCGGAACCTGGAGAAGCTGGCAGAAAGGTTC 222
Query 103 ATGGCAAAAACAAGAAGCACTAAGGATCATCAACAATACAAGAAAGACCAGAACCTGTTGTCTCCAGTGAACTG 176
|||||.||||||||||||||||||||.||||||||.|.||||||||||||.|||||||||||||||||||||||
Sbjct 223 ATGGCCAAAACAAGAAGCACTAAGGACCATCAACAGTTCAAGAAAGACCAAAACCTGTTGTCTCCAGTGAACTG 296
Query 177 CTGGTATTTGCTCCTGAACCAAGTAAGGAGAGAAAGCAAAGACCATGCAACCTTGAGTGACATCTATCTGAACA 250
||||||||||||||||||||||||.||.|||||.|||||||||||.||.||.||||||||||||||||||||||
Sbjct 297 CTGGTATTTGCTCCTGAACCAAGTGAGAAGAGAGAGCAAAGACCACGCCACTTTGAGTGACATCTATCTGAACA 370
Query 251 ATGTGATTATGCGGTTCATGCAGATAAGTGAGGATTCTACCAGGATGTTTAAAAAGAGCAAAGAGATTGCATTC 324
||||.||.||||||||||||||||||||.|||||.||.|||.||||||||||||||||||||||||||||.|||
Sbjct 371 ATGTCATCATGCGGTTCATGCAGATAAGCGAGGACTCCACCCGGATGTTTAAAAAGAGCAAAGAGATTGCGTTC 444
Query 325 CAACTTCATGAGGATTTAATGAAGGTTCTTAATGAGCTTTATACGGTGATGAAAACATACCATATGTATCATGC 398
||.|||||.|||||..|.|||||||||||.||||||||.||.||||||||||||||.|||||.|||||.||..|
Sbjct 445 CAGCTTCACGAGGACCTCATGAAGGTTCTGAATGAGCTCTACACGGTGATGAAAACCTACCACATGTACCACTC 518
Query 399 AGAGAGCATCAGTGCAGAGAGCAAGCTGAAAGAGGCCGAAAAACAAGAGGAAAAGCAAATTGGGAGATCTGGTG 472
|||||||||||||||||||||.|||||||||||.|||||.|||||||||||.|||||.||||||||.||.||.|
Sbjct 519 AGAGAGCATCAGTGCAGAGAGTAAGCTGAAAGAAGCCGAGAAACAAGAGGAGAAGCAGATTGGGAGGTCCGGCG 592
Query 473 ATCCAGTCTTCCATATTCGACTAGAGGAGAGACATCAACGGCGAAGCTCTGTAAAGAAAATTGAAAAAATGAAA 546
|.|||||||||||.|||.|.||.||.|||||.|||||..||||.||||||||.||||||||||||||||||||.
Sbjct 593 ACCCAGTCTTCCACATTAGGCTGGAAGAGAGGCATCAGAGGCGGAGCTCTGTGAAGAAAATTGAAAAAATGAAG 666
Query 547 GAAAAAAGACAAGCAAAATATTCAGAAAATAAGCTAAAATCAATTAAGGCACGGAACGAATATCTCCTAACACT 620
|||||.|||||||||||||||||||||||||||||.|||||.||.||.||.||.|||||.||||||||||||||
Sbjct 667 GAAAAGAGACAAGCAAAATATTCAGAAAATAAGCTGAAATCGATCAAAGCCCGCAACGAGTATCTCCTAACACT 740
Query 621 TGAAGCCACCAATGCCTCAGTTTTCAAGTACTATATTCATGATCTTTCTGATTTAATTGATTGCTGTGATCTTG 694
||||||.|||||.|||||.||.||||||||.||.||.|||||||||||.||.|||||.||.|||||||||||.|
Sbjct 741 TGAAGCAACCAACGCCTCCGTGTTCAAGTATTACATCCATGATCTTTCAGACTTAATAGACTGCTGTGATCTCG 814
Query 695 GCTACCATGCAAGTCTGAACAGAGCCCTAAGAACATATCTGTCTGCGGAGTACAACCTTGAAACCTCCAGACAT 768
||||||||||||||||||||||||||||.|||||.||.||.||.|||||||||||||||||||||||||||||.
Sbjct 815 GCTACCATGCAAGTCTGAACAGAGCCCTCAGAACGTACCTCTCGGCGGAGTACAACCTTGAAACCTCCAGACAC 888
Query 769 GAGGGCTTAGACATTATTGAGAATGCAGTTGATAATTTAGAGCCCAGGAGCGATAAGCAGAGATTCATGGAGAT 842
||.|||||||||||.|||||.||.||.||.||.|||||||||||||||||.||.||||||||.|||||||||||
Sbjct 889 GAAGGCTTAGACATCATTGAAAACGCTGTGGACAATTTAGAGCCCAGGAGTGACAAGCAGAGGTTCATGGAGAT 962
Query 843 GTACCCTGCTGCGTTCTGTCCACCAATGAAGTTTGAGTTTCAGTCTCACATGGGTGATGAGGTGTGCCAGGTCA 916
|||||||||.||.|||||.||.||||||||.||.||||||||||||||||||||||||||||||||.|||||||
Sbjct 963 GTACCCTGCGGCATTCTGCCCGCCAATGAAATTCGAGTTTCAGTCTCACATGGGTGATGAGGTGTGTCAGGTCA 1036
Query 917 GTGCCCAGCAGCCAGTCCAGGCAGAGCTCATGCTCAGGTACCAACAGTTGCAGTCCCGCCTTGCCACGCTCAAA 990
|.|||||||||||.||||||||.|||||||||||||||.||||||||.||||||||||.||.|||||.|||||.
Sbjct 1037 GCGCCCAGCAGCCCGTCCAGGCGGAGCTCATGCTCAGGAACCAACAGCTGCAGTCCCGACTGGCCACACTCAAG 1110
Query 991 ATCGAGAATGAAGAGGTTAAGAAAACGACTGAAGCCACCTTGCAGACGATACAAGATATGGTCACCATCGAGGA 1064
|||||||..||.|||||.|||||||||||.|||||||||.|.||||||||.|||||||||||||||||.|||||
Sbjct 1111 ATCGAGAGCGAGGAGGTCAAGAAAACGACAGAAGCCACCCTCCAGACGATCCAAGATATGGTCACCATTGAGGA 1184
Query 1065 CTATGATGTTTCTGAATGCTTCCAGCACAGTCGTTCCACAGAATCTGTGAAGTCCACTGTCTCTGAAACCTACC 1138
|||||||||.|||||.||.|||||||||||.||.||||||||.|||||||||||||||||.||.||||||||||
Sbjct 1185 CTATGATGTGTCTGAGTGTTTCCAGCACAGCCGATCCACAGAGTCTGTGAAGTCCACTGTGTCAGAAACCTACC 1258
Query 1139 TGAGTAAACCCAGCATCGCCAAGAGAAGAGCCAACCAGCAGGAAACTGAACAGTTCTACTTCATGAAACTCAGA 1212
||||||||||||||||||||||||||.|||||||||||||.|||||.||.||||||||||||||||||||..||
Sbjct 1259 TGAGTAAACCCAGCATCGCCAAGAGACGAGCCAACCAGCAAGAAACGGAGCAGTTCTACTTCATGAAACTTCGA 1332
Query 1213 GAATATTTGGAAGGCAGTAATCTCATCACAAAACTTCAAGCCAAACATGACTTGCTGCAGAGGACCCTGGGAGA 1286
||.|...|||||||||||||.|||||||||||.||.||.||.||.||||||||||||||||||||.||.|||||
Sbjct 1333 GAGTTCCTGGAAGGCAGTAACCTCATCACAAAGCTGCAGGCTAAGCATGACTTGCTGCAGAGGACTCTTGGAGA 1406
Query 1287 AGG---------TGA----------------------------------------------------------- 1292
||| |||
Sbjct 1407 AGGCCATAGAGCTGAATATATGACTACAAGCCGGGGACGAAGGAACTCTCACGCAAGACATCAGGACTCAGGCC 1480
Query 1293 --GTTATC---CAAAATGTATGGGAAGATGACCTGGAT--GATACATCGTATCATGTATAT---ATTCCAGAA- 1355
|||||| |..|.||| |||| |.|||.|| |||.||| |.||.|.||| .|| |||.|
Sbjct 1481 AGGTTATCCCTCTCATTGT---GGAA----AGCTGCATCCGATTCAT----TAATCTCTATGGCCTT-CAGCAC 1542
Query 1356 ------------AGAGTAT--------------GAATTG-----TAT-----ATTTGTGCTTT-AAGA-AGCAG 1391
|||||.| |||.|| ||| ||| |||| .||| ||..|
Sbjct 1543 CAGGGGATTTTCAGAGTGTCTGGCTCCCAGGTGGAAGTGAACGATATCAAGAATT----CTTTCGAGAGAGGTG 1612
Query 1392 AGGACACTCTGT--GTTTAG-------------------ATTTGGT----------------------TT---- 1418
||.||.|||||| |.|.|| |.|.||| ||
Sbjct 1613 AGAACCCTCTGTCCGATGAGCAGAGCAACCACGATATCAACTCGGTGGCCGGCGTGCTGAAGCTGTACTTCCGA 1686
Query 1419 ----------------TGTTT-----------GTATA-TGTCATGAT--------------------------- 1437
|.||| ||.|| ||.|.||||
Sbjct 1687 GGGCTGGAAAACCCCCTCTTTCCTAAGGAAAGGTTTACTGACCTGATTTCCTGTATCAGAATAGATAACCTCTA 1760
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1761 TGAGAGGGCGCTCCACATCCGCAAACTCCTCCTGACCTTGCCCAGGTCGGTCCTTATAGTGATGAGGTACCTGT 1834
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1835 TTGCCTTCCTCAATCACCTCTCCCAGTACAGTGACGAGAACATGATGGACCCTTACAATCTGGCCATTTGCTTC 1908
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1909 GGCCCAACACTGATGCCGGTTCCAGAGATACAGGACCAAGTGTCTTGCCAGGCACACGTGAACGAGATTGTGAA 1982
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 1983 GACCATCATCATCCATCACGAGACTATTTTCCCAGATGCTAAAGAACTGGACGGCCCCGTGTATGAGAAATGCA 2056
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2057 TGGCCGGAGGCGACTACTGCGACAGCCCCTACAGTGAGCATGGTACATTGGAGGAGGTGGACCAAGACGCCGGC 2130
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2131 ACAGAGCCCCACACCAGTGAAGACGAGTGTGAGCCCATCGAAGCCATAGCCAAGTTTGACTACGTCGGGCGGTC 2204
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2205 AGCTAGAGAGCTGTCCTTCAAGAAGGGTGCATCCCTGCTGCTGTATCACCGAGCCTCCGAGGATTGGTGGGAAG 2278
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2279 GCAGACACAACGGGATCGATGGCCTTGTGCCTCATCAGTACATAGTTGTGCAAGATATGGACGATACATTTTCA 2352
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2353 GACACGCTGAGCCAAAAGGCCGACAGCGAAGCCAGCAGCGGGCCAGTCACTGAAGACAAGTCCTCATCCAAGGA 2426
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2427 CATGAACTCCCCGACTGACCGCCATTCTGATAGCTATTTAGCCAGACAAAGAAAGAGAGGAGAGCCACCCCCTC 2500
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2501 CGGGAAGACGTCCCGGCAGGACCAGCGATGGCCATTGTCCCCTGCATCCCCCGCATGCTCTGTCTAACTCCTCA 2574
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2575 ATTGATCTGGGATCCCCAAACCTAGCCAGTCACCCCAGGGGCCTGTTGCAGAACCGTGGCCTCAATAATGACAG 2648
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2649 TCCTGAGAGGCGGCGCCGGCCGGGCCACGGCAGCCTGACCAATATCAGCCGGCATGACTCCCTCAAGAAGATCG 2722
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2723 ACAGCCCTCCTATCCGGAGGTCCACATCATCAGGGCAGTACACAGGCTTCAATGACCACAAGCCACTGGACCCC 2796
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2797 GAGACGATTGCTCAGGATATTGAGGAGACCATGAACACTGCTTTGAACGAACTCCGTGAACTCGAGAGGCAGAG 2870
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2871 CACAGTGAAGCACGCCCCCGATGTCGTGCTAGACACTTTGGAGCAAGTGAAGAACTCGCCCACCCCTGCGACTT 2944
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2945 CCACAGAATCACTCAGCCCACTGCACAATGTCGCCCTCAGGGGCTCAGAGCCACAGATTCGCCGGAGCACCAGC 3018
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3019 TCCTCCAGCGAGACAATGAGTACTTTCAAGCCTATGGTGGCGCCCCGGATGGGCGTCCAGCTGAAGCCCCCAGC 3092
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3093 CCTTAGGCCAAAGCCTGCTGTTCTTCCAAAAACAAACCCTACGATGGGACCTGCCGCACCTTCCCAGGGTCCCA 3166
Query 1438 -------------------- 1437
Sbjct 3167 CAGACAAGTCTTGCACGATG 3186
