Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12758
- Subject:
- NM_001039211.3
- Aligned Length:
- 1824
- Identities:
- 1137
- Gaps:
- 609
Alignment
Query 1 ATGCAGCTGGAAGCCCTGAACCTGCTGCACACACTAGTCTGGGCACGGAGTCTCTGCCGTGCCGGAGCTGTGCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GACACAGGAGCGGCTGTCAGGCAGTGCCAGCCCTGAGCAAGTGCCAGCTGGTGAGTGCTGTGCTCTGCAGGAGT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ATG----AGGCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCT 218
||| |||.||||.||.|.|.| |.|||||| ||||
Sbjct 1 ATGTCAAAGGACGCCCTGAATCTG---------GCGCAGAT------GCAG----------------------- 36
Query 219 GAGCGAGGAGACCCGGC------AGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACG 286
|||.||||.|.|| ||||.|||.| |||||| ||
Sbjct 37 ----GAGCAGACGCTGCAGTTGGAGCAACAGTC------------------CAAGCT-------CA-------- 73
Query 287 AGGACCAACTGAAGCAGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAG 360
|.||||||.||||||||| ||||||||||||||||||||||||||||||
Sbjct 74 ------------------AACAACTTGTCAATGAGG---ATTTACGGAAGCAGGAGGAGTCCGTGCAGA----- 121
Query 361 GAAGCCATGCGGCGAGCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGAC 434
Sbjct 122 -------------------------------------------------------------------------- 121
Query 435 CGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGT 508
Sbjct 122 -------------------------------------------------------------------------- 121
Query 509 CCGAGCACCGTCAGACCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTT 582
||||||.|||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 122 ---AGCACCATCAGACCTTCTTGGAGTCCATCAGGGCGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTT 192
Query 583 GTGACAGACCGGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GTGACAGACCGGGACAAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAA 266
Query 657 GAATGCGACAGCCGTCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCC 730
||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GAATGCGACAGCCGTCACTGGCCGCTACATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCC 340
Query 731 GCATCACGGTGCTGGAGGCGCTGCGGCACCCCATC---CAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGAC 801
|||||||||||||.||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 341 GCATCACGGTGCTTGAGGCGCTGCGGCACCCCATCCAGCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGAC 414
Query 802 GTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACAC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||...||.|||||||.
Sbjct 415 GTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAATGACAAGGAACAT 488
Query 876 CAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCA 949
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 489 CAAGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCA 562
Query 950 AGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAA 636
Query 1024 GGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGA 1097
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|||||||
Sbjct 637 GGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGA 710
Query 1098 AGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCC 1171
|||.||||||||||||||||||||||||||||||.||||||||.||||||||||.|||||||||||||||||||
Sbjct 711 AGCGGACGCCTTCCTTCGGAAGCGAGCCACTGAGAAGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCC 784
Query 1172 TGTACCACATGGGCCAACACAGCAACAAATTCATGCTGGTCCTGGCCAGCAATCTG----CCTGAGCAGTTCGA 1241
||||||.||.||||||.|||||||||||||||||||||.|||||||||| ||| ||.|||||||||||
Sbjct 785 TGTACCGCACGGGCCAGCACAGCAACAAATTCATGCTGATCCTGGCCAG----CTGCCACCCCGAGCAGTTCGA 854
Query 1242 CTGTGCCATCAACAGCC-GCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTG 1314
|||.|||||||| .||| ||||.||||||||||||||||||||||||||...||||||||||||||.|||||||
Sbjct 855 CTGGGCCATCAA-TGCCTGCATCGACGTGATGGTCCACTTCGACCTGCCAGGGCAGGAGGAGCGGGCGCGCCTG 927
Query 1315 GTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTT 1388
||||||.||.||.||.||.|.|.|||||||||||||||||||||||||||.|||||.|||||||||||||||||
Sbjct 928 GTGAGAATGTATCTTAACGAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCGGCGTCTGAAGCTGGCCCAGTT 1001
Query 1389 TGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGG 1462
||||||||||||||||||||..|||.|||||||||||||.|||||||||||..|||||.|||||||.|||||||
Sbjct 1002 TGACTACGGGAGGAAGTGCTTAGAGATCGCTCGGCTGACAGAGGGCATGTCATGCCGGAAGATCGCACAGCTGG 1075
Query 1463 CCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTG 1536
||||||||||||||||||||||.|||||||||||||||||||||||.||.||||||||||||||||||||.|||
Sbjct 1076 CCGTGTCCTGGCAGGCCACGGCGTATGCCTCCAAGGACGGGGTCCTGACCGAGGCCATGATGGACGCCTGCGTG 1149
Query 1537 CAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCA 1610
|||||...||||||||||.|||..||||.|||||||||||||||||.||||.|||||||||.||.||.||||||
Sbjct 1150 CAAGACTTTGTCCAGCAGCACCAGCAGATGATGCGCTGGCTGAAGGGGGAGAGGCCTGGGCCCGAGGACGAGCA 1223
Query 1611 CCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTG 1684
.|||..||||
Sbjct 1224 ACCCTCATCC---------------------------------------------------------------- 1233
Query 1685 CCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATG 1758
Sbjct 1234 -------------------------------------------------------------------------- 1233
Query 1759 TCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTG 1806
Sbjct 1234 ------------------------------------------------ 1233
