Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_12758
- Subject:
- XR_002956997.1
- Aligned Length:
- 2589
- Identities:
- 1646
- Gaps:
- 847
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTGTGTGGCGCCTGCGCAGTGGCGGTGACCACCGGCTCGCGGCGCGTGGAGGCTGCTCCCAGCCGCGCGCGA 74
Query 1 --------------------------------------------ATGC-AGC------TGG------------A 11
.||| ||| ||| |
Sbjct 75 GTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTGCGAGCATGTCGTGGCTCTTCGGCATTA 148
Query 12 A-----GCCC------TGAA---------CC-----------TGCTGCACACACTAGTCTGGG----------- 43
| |||| |||| || |||.||.|.|.| ||.|.|||
Sbjct 149 ACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGC-AGCCCGGGGCCGAGGGCGG 221
Query 44 -------CACGGAGTCTCTG-----CCGTGCCGGAGC------------TGTGCA-----GAC--------ACA 80
|.||| || || ||| |||||.|| .|.||| ||| .|.
Sbjct 222 CGGGGACCGCGG-GT---TGGGAGACCG-GCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCT 290
Query 81 GGAGCG-GCTGTC-AGGCAG-------------------------TGCCA-----GCCCTGA------------ 110
|||||| ||.|.| ||||.| ||||| |||||||
Sbjct 291 GGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGGACGCCCTGAATCTGGCACAGA 364
Query 111 -GCAAGTGC--------CAGCTGGTG----AGTGCTGTGCTCTGCAGGAGTATGAGGCCGCCGTGGAGCAGCTC 171
|||.|.|| |||.|||.| ||| |...|||| .|.|||||||||||||||||||||||||||
Sbjct 365 TGCAGGAGCAGACGCTGCAGTTGGAGCAACAGT-CCAAGCTC--AAAGAGTATGAGGCCGCCGTGGAGCAGCTC 435
Query 172 AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC 509
Query 246 CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG 583
Query 320 AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG 657
Query 394 ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA 467
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 658 ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA 731
Query 468 GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA 541
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 732 GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA 805
Query 542 GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG 615
||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 806 GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGACAAAGTGACAGCCACGGTG 879
Query 616 GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CGTCACTGGCCGCTTCATCG 688
|||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|||.|.|||||||||||||
Sbjct 880 GCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTGTCGCCGGCCGCTTCATCG 952
Query 689 AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCC 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 953 AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCC 1026
Query 763 ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGA 836
||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.||||||||||||||
Sbjct 1027 ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGTGCTCAGTCCCAGCCTGGA 1100
Query 837 AGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGC 910
||||||||||||||||||||||||||||||.||||||||||||||||||||..|||||||||||.||||||||.
Sbjct 1101 AGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCCTGTACAGGAACATCCTGA 1174
Query 911 TGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC 984
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC 1248
Query 985 ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC 1322
Query 1059 CAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGG 1132
||||||||||||||||||||||||||||||..||||||||||.||||||||||||||||||||||||||.|||.
Sbjct 1323 CAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTTCCTTCGGAAGCGAGCCACCGAGA 1396
Query 1133 AGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAA------- 1199
||||||||.||||||||||.|||||||||||||||||||||||||.||.||||||.|||||||||||
Sbjct 1397 AGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAACCCCAGT 1470
Query 1200 -----------------------------------------------------------------------ATT 1202
.||
Sbjct 1471 CACGTGTCACACGGAGGATCAAGTCCTGCTGGTCGGCCGTGGCTGACTCCTCAGGCACGTTGGGCTCCCAGGTT 1544
Query 1203 CATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCC 1276
|||||||||||||||||||||.|..||.||||||||||||||.||||||||...||||||..|.|.||||||||
Sbjct 1545 CATGCTGGTCCTGGCCAGCAACCAACCAGAGCAGTTCGACTGGGCCATCAATGACCGCATCAATGAGATGGTCC 1618
Query 1277 ACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCG 1350
|||||||||||||...|||||||||.|||||||||||
Sbjct 1619 ACTTCGACCTGCCAGGGCAGGAGGAACGGGAGCGCCT------------------------------------- 1655
Query 1351 GCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCT 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 ----------------GGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCT 1713
Query 1425 GACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||
Sbjct 1714 GACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCGAGG 1787
Query 1499 ACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGC 1572
||||||||||.||.|||||||||||||||.||.|.|||||||||||||||||||||.|||..|||||||||.||
Sbjct 1788 ACGGGGTCCTGACCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCAGCACCAGCAGAAGATGTGC 1861
Query 1573 TGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCA-AGGCGAGACCCTCACCT 1645
||||||||||||||.|||||||||||.||||.|||||.|.|||.||||.||||||| ||| ||||.||.||.||
Sbjct 1862 TGGCTGAAGGCGGAAGGGCCTGGGCGTGGGGACGAGCCCTCCCCATCCTGAGTCCACAGG-GAGATCCACAGCT 1934
Query 1646 CATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATG 1719
||.|||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1935 CACGGAGCCTGGCCGCGGACCCCTCCCACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGGTG 2008
Query 1720 GGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGG 1793
|||||||||||||||||||||||||||||||||||||||||||||||||..|||||||||||||||||||||||
Sbjct 2009 GGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGCGGGTCGGCCGTTCTGCCCCCCAGG 2082
Query 1794 GCACCCCCTGTTG------------------------------------------------------------- 1806
|||||||||||||
Sbjct 2083 GCACCCCCTGTTGTAGGCACTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATG 2156
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2157 CATTTTCCGTCTGGCTCACAGGGGGAGGGTGAGGCTTTGCACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGG 2230
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2231 GTGCTGGCTGAGCCCCCGGGGCAGCAGGAGCCAGGCAGGTGATGTCTTTGTTCTCGGCTCCCACAGCAGAGCCA 2304
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2305 GGTGAGGGGGCGCCTGCCAGGGCCAGACCCAGGTGGGGCAGCCTGAACCCTGCTTCCCCCTGTGGCCGGCATGC 2378
Query 1807 -------------------------------------------------------------------------- 1806
Sbjct 2379 CCCGATCTTTCACACACTGGTGACCCTGAGAGAGGAGGGAGGAGGGAACCTGGCGGGGGTGTCTGAGGCCGCAC 2452
Query 1807 ------------------------------------------------------------------------- 1806
Sbjct 2453 TGTCAGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGGGTCTGTTTACCTAATAAAGTCCCACAGGTGCCTCA 2525
