Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13781
Subject:
XR_002958675.1
Aligned Length:
4306
Identities:
245
Gaps:
4029

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCATCCTATGAATTGGGTCATTCATGTCCTACCCAGCTAAAACAGAGGCCAGGAGCCAGGGAGGAAAAGCAGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGCCACACAACATTGTTTCCGAAATGGACTTCTCTGCAAGCCTGACTCCTGAGACTGTGCATTGTACCCTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AACCAGCTTTATCCATAGCTTCTGCGATAAATGGCTGTAAGTCTTGGACTCCTTGCTCCAAACGCAGCGACTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAATAGAACCTCCCAGCTCCCAGCCCTTCCTAGTGCCCATGGGCTTTACATAGGGCAAGAGAACATTTCTCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTATAATTGCCATCTCTTTGCTCTCTCAACATGGTGAACACCATCCGGACTCCGTGTATGTCTCAAATTACAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTCTTTCTTTGCAAATGAAATATGAAATTTAGAGGCTCTTCTAAACACTTTAAATTTGATTTGACATTTTCAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCAGATGTAAGTTTTAGAGAATGAGATTCTCCATAAAAATGACCCTTTCATGCTGTGGCCTCCATAGAAGATGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCAGGCCAGGTGCCCACATGGCAGGCATTTATTTTCTCACAGATCTGGAAGCTGCAGGTCCAACTTCGAGGGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGGGTGGGGTTGTTTCCTCTGAGGCCGCTCCTTCTGGCTGGCAGGGAGTCTCTTCCAGCCGTGTCCTCTGTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTTCCTCTATGCACACGCACCTCTGGGATCTCTCTGCCTCCAAATATCATCTTTTTTTTTTTTTTTTTTTTTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGAGACAGAGTGTTGCTCCTCTTGTCCAGGCTGGAATGCAATGGCACAATCTGGACTCACTGCAACCTCCGCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCCCGAGTTTAAGCGATTCTTCTGCTTCAGCCTCCCGAGTAAAAGGCATGCATCACCACACCTGGTTAATTTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TAGTTTTAGTAGAGATGGGGTCTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTCTCAGCCTCTCCAAGTGCTGGGATTACAGGCATCAGCCACTATGCCCGGCTGGGATCATATGTTCCACACAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTTTGTTCAATAAGCATGGACTGCAACCACCTACATGAATATTCATAGCTCCTCCTGTAGCCTGTTGAATATGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATGTTTAGCCAACCTCTTCAGCATAAAGCTCCTGCCCAAACCCCTCCTGCTCCTAAATGTCTGTCTCTGGTGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AACCAGAGGCTGCTCTTCCCAGGCTGCTGGATGGCTACCTTGCAGGCTGTCACCCTTAACAAGAAATAAAGTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCTTTGCAAATGCATCCCTTGTGTAATTTGTAGGTCACCGCGCCATGGGAACACGCTACCATGGGAAGGGAGCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGAGACGCGCAGGGAGGCTCCAGACAGGCTGGCCTGGGACACCAGCCGCTGCCCTTCCATAACATGGGGACAA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GAGAGGGCAAAAGTTCAGCCCAACACGGAGGATCTTCGGGCAGGAGATGGGGAAGAAGGAGAAGCAGGAAGGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGAGCTCAGTGTGGGGGCGCGCATGGCATCCCGGTGGGACATCTGAGGCCCACACCCACCTGCTGTCCCTCCCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCCACGGTGGCCACCGAGGGTGAAGGCCTGGGGGGAGGCAGACGCCTGGCCCTTTACTCTCCCTCCCTGTCCCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGGCCGCTGGGTGGGGGCCGTCTCTGGGATGATCCCCGAGGGCAGGATCCGGGAGTCCCTGCAGAGGCATCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTGTCTGTCTTGATGGTGGAGTGGCGGCTCCAGCTGGGCGGGACCACCAGGGGAGGGGCTTGTGCTCTGCTGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTCAGCCTGGTGTGGACCCACCTCCCGGGCGCTGGCTGCAATGACTTTCTCTTTCCCTTTGCAATTGCCTTGGG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCCTGCCGCACAGAGCGGCCTGTCTTTATCAGAGGTCCCTCTGCCAGGGGGAGGGCCCCAGAGAAAACCAGAAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GAGGGTGAGAGACTGAGGAAGATAAAGCGTCCCAGGGCCTCCTACACCAGCGCCTGAGCAGGAAGGGGGAGGGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCATGACTACGAGGCCCTGGGAGGTCACTTTAGGGAGGGCTGTCCTGAAACCTGGAGCCTGGAGCAGAAAGTGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AACCCTGGTGCTCCAGACAAAGATCTTAGTCGGGACTAGCCGGCCAAGGATGAAGCCTCACTTCAGAAACACAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TGGAGCGAATGTATCGAGACACATTCTCCTACAACTTTTATAATAGACCCATCCTTTCTCGTCGGAATACCGTC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGCTGTGCTACGAAGTGAAAACAAAGGGTCCCTCAAGGCCCCGTTTGGACGCAAAGATCTTTCGAGGCCAGGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTATTCCCAGCCTGAGCACCACGCAGAAATGTGCTTCCTCTCTTGGTTCTGTGGCAACCAGCTGCCTGCTTACA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGTGTTTCCAGATCACCTGGTTTGTATCCTGGACCCCCTGCCCGGACTGTGTGGCGAAGCTGGCCGAATTCCTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GCTGAGCACCCCAATGTCACCCTGACCATCTCCGCCGCCCGCCTCTACTACTACTGGGAAAGAGATTACCGAAG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GGCGCTCTGCAGGCTGAGTCAGGCAGGGGCCCGCGTGAAGATTATGGACGATGAAGAATTTGCATACTGCTGGG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AAAACTTTGTGTACAGTGAAGGTCAGCCATTCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCTGCAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CGCACGCTAAAGGAGATTCTCAGGTGGATCCTGAGACCCATTGTCATGCAGAAAGGTGCTTCCTCTCTTGGTTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGTGACGACATACTGTCTCCTAACACAAACTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAGAGTG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGCAGGGGAGGTGGCCGAGTTCCTGGCCAGGCACAGCAACGTGAATCTCACCATCTTCACCGCCCGCCTCTACT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ACTTCTGGGATACAGATTACCAGGAGGGGCTCCGCAGCCTGAGTCAGGAAGGGGCCTCCGTGGAGATCATGGGC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TACAAAGATTTTAAATATTGTTGGGAAAACTTTGTGTACAATGATGATGAGCCATTCAAGCCTTGGAAAGGACT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AAAATACAACTTTCTATTCCTGGACAGCAAGCTGCAGGAGATTCTCGAGTGAGGGGTCTCCCCGGGCCTCATGG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCTGTCTCCTCTAGCCTCCTGCTCATGTTGTGCAGGCCTCCCCTCCATCCTGGACCAGCTGTGCTTTTGCCTGG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TCATCCTGAGCCCCTCCTGGCCTCAGGGCCATTCCATAGTGCTCCCCTGCCTCACCACCTCCTCTCCGCTCTCC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CAGGCTCTTCCTGCAGAGGCCTCTTTCTGCCTCCATGGCTATCCATCCACCCACCAAGACCCTGTTCCCTGAGC  3330

Query    1  --------------------------------------------------------------------ATGGAG  6
                                                                                |.|||.
Sbjct 3331  CTGCATGCCCCTAACCTGCCTTTTCCCATCTCCCCAGCATAACCTAATATTTTTTTTTTTTTTTTGAGACGGAA  3404

Query    7  TCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAA  80
            |.|.||||||||||||||.|||||||||||||||..|||||...||||||||||.||||||.||||||||||||
Sbjct 3405  TTTCGCTCTGTCACCCAGACTGGAGTGCAATGGCTTGATCTTGGCTCACTGCAAACTCTGCCTACCAGGTTCAA  3478

Query   81  GCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGC---CCACCAC-CACAGCTGGCTAA----  146
            ||||||||||||.|||.||||||.||||||||||.|||||||..||   ||||||| ||||    |||||    
Sbjct 3479  GCGATTCTCCTGCCTCCGCCTCCCGAGTAGCTGGAATTACAGACGCCTGCCACCACGCACA----GCTAACTTT  3548

Query  147  -----TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAG  215
                 ||||||||||||||||||.||||||||||.|||||.||||||||.|||||||.||||||||||||||||
Sbjct 3549  TTTTTTTTTTGTATTTTTAGTAGTGACTGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAG  3622

Query  216  GTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGC--CA-------  280
            |||.|||||||..||..||.|||||||||||||||||||.|||.||||||||||| |||.|||  ||       
Sbjct 3623  GTGATCCGCCTATCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTG-GCCCGGCGGCACAACCAA  3695

Query  281  ---TT---------------------------------------------------------------------  282
               ||                                                                     
Sbjct 3696  ATCTTATTAAACTCACCCTAGGCTGGCCGCGGTGACTCATGCCTATAATCCCCCAGCAATTTGGGAGGCAGAGG  3769

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3770  TGAGAGAATCGCTTGAGCCCAGGAATTCGAGACCAGCCTGGGCCACATGACAAAGCCCCATCTCTACAAAAAAA  3843

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3844  TTACAAAAAAAAAAAAAACAGGTGTGGTGGCATGCACCTGTAGTTGAAGCTACTTGGAAGGATGAAGTGGGAGG  3917

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3918  ATTGCTTGAGCCGGGGAGGTGGAGGCTGCAGTGAACTGAGATCACGTCACTGAACTCCAGTCTGAGCAACAGAT  3991

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3992  CGAGACCCTGCCTGAAAATAAATCAATAAATAAACTCAACCGAAATGGGTATGAAAGTTGAAATGGGTATGTAA  4065

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4066  GTTGAAAACCAGAAGTTTTGAGAAACATCCTTTGTTAACTTTCATCCTACAAATTGGGTCATTCATGTCCTACG  4139

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4140  CAGCTAAAACAGAGCCCAGGAGCCAGGGAGGAAAAGCAGTCAGGCCACACACCATTGCTCCCAAAATGGACTTC  4213

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4214  TCTGCAAGCCTGACTCCTGAAACTGTGCATTGTACCCTGAAACCAGCTTTATCCATAGCTTCTGCAATAAATGG  4287

Query  283  --------------  282
                          
Sbjct 4288  CTGTAAGTCTTGGA  4301

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