Nucleotide Global Alignment

Description

• Query: ccsbBroad304_13811
• Subject: NM_001030010.3
• Aligned Length: 1405
• Identities: 562
• Gaps: 828

Alignment

Query    1  ATGGA-CCCCTTGGGGACACGCTGCGGCGACTGCGGGAGGCCTTCCACGCGGGGCGCACACGGCCAGCTGAGTT  73
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct    1  ATGGACCCCCTTGGGGACACGCTGCGGCGACTGCGGGAGGCCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTT  74

Query   74  CCGGGCTGCGCAGCTCCAAGGCCTGGGCCGCTTCCTGCAAGAAAACAAGCAGCTTCTGCACGACGCACTGGCCC  147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCGGGCTGCGCAGCTCCAAGGCCTGGGCCGCTTCCTGCAAGAAAACAAGCAGCTTCTGCACGACGCACTGGCCC  148

Query  148  AGGACCTGCACAAGTCAGCCTTCGAGTCGGAGGTGTCTGAGGTTGCCATCAGCCAGGGCGAGGTCACCCTGGCC  221
            |||||||||||||                                                             
Sbjct  149  AGGACCTGCACAA-------------------------------------------------------------  161

Query  222  CTCAGGAACCTCCGGGCCTGGATGAAGGACGAGCGTGTGCCCAAGAACCTGGCCACGCAGCTGGACTCCGCCTT  295
                                                              ||||||||||||||||||||||||
Sbjct  162  --------------------------------------------------GGCCACGCAGCTGGACTCCGCCTT  185

Query  296  CATCCGGAAGGAGCCCTTTGGCCTGGTCCTCATCATTGCGCCCTGGAACTATCCGCTGAACCTGACGCTGGTGC  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  186  CATCCGGAAGGAGCCCTTTGGCCTGGTCCTCATCATTGCGCCCTGGAACTATCCGCTGAACCTGACGCTGGTGC  259

Query  370  CCCTCGTGGGAGCCCTCGCTGCAGGGAACTGTGTGGTGCTGAAGCCATCGGAGATTAGCAAGAACGTCGAGAAG  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  CCCTCGTGGGAGCCCTCGCTGCAGGGAACTGTGTGGTGCTGAAGCCATCGGAGATTAGCAAGAACGTCGAGAAG  333

Query  444  ATCCTGGCCGAGGTGCTGCCCCAATACGTGGACCAGAGCTGCTTTGCTGTGGTGCTGGGCGGGCCCCAGGAGAC  517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  334  ATCCTGGCCGAGGTGCTGCCCCAATACGTGGACCAGAGCTGCTTTGCTGTGGTGCTGGGCGGGCCCCAGGAGAC  407

Query  518  GGGGCAGCTGCTAGAGCACAGGTTCGACTACATCTTCTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTTATGA  591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  408  GGGGCAGCTGCTAGAGCACAGGTTCGACTACATCTTCTTCACAGGGAGCCCTCGTGTGGGCAAGATTGTTATGA  481

Query  592  CTGCTGCCGCCAAGCACC-----CC--TCA-----------------AAG------------------------  617
            ||||||||||||||||||     ||  |||                 |||                        
Sbjct  482  CTGCTGCCGCCAAGCACCTGACACCTGTCACCCTGGAGCTGGGGGGCAAGAACCCTTGCTACGTGGACGACAAC  555

Query  618  -----------------------------------------------CAGCGCCTGCC--TCCT--------CC  634
                                                           ||.||||.|||  .|||        ||
Sbjct  556  TGCGACCCCCAGACCGTGGCCAACCGCGTGGCCTGGTTCCGCTACTTCAACGCCGGCCAGACCTGCGTGGCCCC  629

Query  635  CTCCTGGGTCTT------CCCT------------------CTCCCTGCC-------------TCAGCC--TCCT  669
            |..||..|||.|      ||||                  ||.||||||             |||.||  |.||
Sbjct  630  CGACTACGTCCTATGCAGCCCTGAGATGCAGGAGAGGCTGCTGCCTGCCCTGCAGAGCACCATCACCCGTTTCT  703

Query  670  ----------CCCTCAGCCGCTCCC--AACCA------------------------------------------  689
                      |||.||| .||||||  ||||.                                          
Sbjct  704  ATGGCGACGACCCCCAG-AGCTCCCCAAACCTGGGCCGCATCATCAACCAGAAACAGTTCCAGCGGCTGCGGGC  776

Query  690  --------------------------------------------------------------------------  689
                                                                                      
Sbjct  777  ATTGCTGGGCTGCGGCCGTGTGGCCATTGGGGGCCAGAGCGATGAGAGCGATCGCTACATCGCCCCCACGGTGC  850

Query  690  --------------------------------------------------------------------------  689
                                                                                      
Sbjct  851  TGGTGGATGTGCAGGAGATGGAGCCTGTGATGCAGGAGGAGATCTTCGGGCCCATCCTGCCCATCGTGAACGTG  924

Query  690  --------------------------------------------------------------------------  689
                                                                                      
Sbjct  925  CAGAGCTTGGACGAGGCCATCGAGTTCATCAACCGGCGGGAGAAGCCCCTGGCCCTGTACGCCTTCTCCAACAG  998

Query  690  --------------------------------------------------------------------------  689
                                                                                      
Sbjct  999  CAGCCAGGTGGTCAAGCGGGTGCTGACCCAGACCAGCAGCGGGGGCTTCTGTGGGAACGACGGCTTCATGCACA  1072

Query  690  --------------------------------------------------------------------------  689
                                                                                      
Sbjct 1073  TGACCCTGGCCAGCCTGCCTTTTGGAGGAGTGGGTGCCAGTGGGATGGGCCGGTACCATGGCAAGTTCTCCTTC  1146

Query  690  --------------------------------------------------------------------------  689
                                                                                      
Sbjct 1147  GACACCTTCTCCCACCATCGCGCCTGCCTCCTGCGCAGCCCGGGGATGGAGAAGCTCAACGCCCTCCGCTACCC  1220

Query  690  -------------------------------------------------------------------------  689
                                                                                     
Sbjct 1221  GCCGCAATCGCCGCGCCGCCTGAGGATGCTGCTGGTGGCCATGGAGGCCCAAGGCTGCAGCTGCACACTGCTC  1293