Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13970
Subject:
NM_001363879.1
Aligned Length:
3289
Identities:
3278
Gaps:
10

Alignment

Query    1  ATGAGTTGGTTCAACGCCTCCCAGCTCTCCAGCTTCGCTAAGCAGGCCCTGTCCCAGGCCCAGAAGTCTATTGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAGTTGGTTCAACGCCTCCCAGCTCTCCAGCTTCGCTAAGCAGGCCCTGTCCCAGGCCCAGAAGTCTATTGA  74

Query   75  CAGGGTTCTGGACATCCAGGAAGAGGAGCCGAGCATCTGGGCCGAGACCATTCCGTATGGAGAGCCGGGAATAA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CAGGGTTCTGGACATCCAGGAAGAGGAGCCGAGCATCTGGGCCGAGACCATTCCGTATGGAGAGCCGGGAATAA  148

Query  149  GTTCCCCTGTCAGTGGAGGATGGGATACTTCAACCTGGGGGTTGAAATCAAACACTGAACCTCAGAGTCCACCA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTTCCCCTGTCAGTGGAGGATGGGATACTTCAACCTGGGGGTTGAAATCAAACACTGAACCTCAGAGTCCACCA  222

Query  223  ATAGCCTCTCCTAAAGCAATCACAAAGCCAGTTCGGAGGACTGTGGTCGATGAATCTGAAAATTTCTTCAGTGC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATAGCCTCTCCTAAAGCAATCACAAAGCCAGTTCGGAGGACTGTGGTCGATGAATCTGAAAATTTCTTCAGTGC  296

Query  297  CTTTCTCTCGCCAACTGATGTCCAGACCATTCAGAAGAGTCCAGTGGTATCAAAACCTCCAGCAAAATCACAAC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTTTCTCTCGCCAACTGATGTCCAGACCATTCAGAAGAGTCCAGTGGTATCAAAACCTCCAGCAAAATCACAAC  370

Query  371  GACCAGAAGAAGAAGTGAAAAGCAGCTTACATGAATCCTTGCACATTGGCCAGTCAAGAACTCCTGAAACAACT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GACCAGAAGAAGAAGTGAAAAGCAGCTTACATGAATCCTTGCACATTGGCCAGTCAAGAACTCCTGAAACAACT  444

Query  445  GAATCACAAGTAAAAGACTCTTCTTTGTGTGTTTCAGGGGAAACTCTGGCAGCAGGTACTTCATCACCTAAAAC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAATCACAAGTAAAAGACTCTTCTTTGTGTGTTTCAGGGGAAACTCTGGCAGCAGGTACTTCATCACCTAAAAC  518

Query  519  TGAAGGCAAGCACGAAGAAACTGTTAATAAAGAATCGGATATGAAGGTGCCAACTGTAAGTTTGAAAGTATCTG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGAAGGCAAGCACGAAGAAACTGTTAATAAAGAATCGGATATGAAGGTGCCAACTGTAAGTTTGAAAGTATCTG  592

Query  593  AAAGTGTAATTGATGTGAAAACAACTATGGAAAGTATATCTAATACGTCTACGCAGTCTCTCACAGCAGAAACA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAAGTGTAATTGATGTGAAAACAACTATGGAAAGTATATCTAATACGTCTACGCAGTCTCTCACAGCAGAAACA  666

Query  667  AAGGACATAGCTTTGGAACCTAAGGAACAAAAACATGAAGACAGGCAGAGCAATACACCTTCTCCTCCTGTTAG  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAGGACATAGCTTTGGAACCTAAGGAACAAAAACATGAAGACAGGCAGAGCAATACACCTTCTCCTCCTGTTAG  740

Query  741  TACCTTTTCATCAGGTACTTCTACCACCAGTGATATTGAAGTTTTAGATCATGAAAGTGTAATAAGTGAGAGCT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TACCTTTTCATCAGGTACTTCTACCACCAGTGATATTGAAGTTTTAGATCATGAAAGTGTAATAAGTGAGAGCT  814

Query  815  CAGCGAGCTCGAGACAAGAGACTACAGATTCAAAATCAAGTCTTCACTTGATGCAGACATCTTTTCAGCTTCTC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAGCGAGCTCGAGACAAGAGACTACAGATTCAAAATCAAGTCTTCACTTGATGCAGACATCTTTTCAGCTTCTC  888

Query  889  TCTGCATCTGCTTGTCCTGAATATAATCGTTTAGATGATTTCCAAAAACTCACTGAGAGTTGCTGTTCATCTGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCTGCATCTGCTTGTCCTGAATATAATCGTTTAGATGATTTCCAAAAACTCACTGAGAGTTGCTGTTCATCTGA  962

Query  963  TGCTTTTGAAAGAATAGACTCATTTAGTGTACAGTCATTAGATAGCCGGAGTGTAAGTGAAATCAATTCAGATG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGCTTTTGAAAGAATAGACTCATTTAGTGTACAGTCATTAGATAGCCGGAGTGTAAGTGAAATCAATTCAGATG  1036

Query 1037  ATGAATTGTCAGGCAAGGGATATGCTTTAGTGCCTATTATAGTTAATTCTTCAACTCCAAAGTCTAAAACAGTT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ATGAATTGTCAGGCAAGGGATATGCTTTAGTGCCTATTATAGTTAATTCTTCAACTCCAAAGTCTAAAACAGTT  1110

Query 1111  GAATCTGCTGAAGGAAAATCTGAAGAAGTAAATGAAACATTAGTTATACCCACTGAGGAAGCAGAAATGGAAGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GAATCTGCTGAAGGAAAATCTGAAGAAGTAAATGAAACATTAGTTATACCCACTGAGGAAGCAGAAATGGAAGA  1184

Query 1185  AAGTGGACGAAGTGCAACTCCTGTTAACTGTGAACAGCCTGATATCTTGGTTTCTTCTACACCAATAAATGAAG  1258
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 1185  AAGTGGACGAAGTGCAACTCCTGTTAACTGTGAACAGCCTGATATCTTGGTTTCTTCCACACCAATAAATGAAG  1258

Query 1259  GACAGACTGTGTTAGACAAGGTGGCTGAGCAGTGTGAACCTGCTGAAAGTCAGCCAGAAGCACTTTCTGAGAAG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GACAGACTGTGTTAGACAAGGTGGCTGAGCAGTGTGAACCTGCTGAAAGTCAGCCAGAAGCACTTTCTGAGAAG  1332

Query 1333  GAAGATGTTTGCAAG---------ACAGTTGAATTTCTGAATGAAAAGCTGGAAAAAAGGGAGGCTCAGTTATT  1397
            |||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GAAGATGTTTGCAAGGTAACTCTAACAGTTGAATTTCTGAATGAAAAGCTGGAAAAAAGGGAGGCTCAGTTATT  1406

Query 1398  ATCTCTTAGTAAGGAAAAAGCACTTCTAGAAGAAGCTTTTGATAACCTGAAAGATGAAATGTTCAGAGTGAAAG  1471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ATCTCTTAGTAAGGAAAAAGCACTTCTAGAAGAAGCTTTTGATAACCTGAAAGATGAAATGTTCAGAGTGAAAG  1480

Query 1472  AAGAAAGCAGTAGCATTTCTTCCTTGAAAGATGAGTTTACTCAAAGAATTGCAGAAGCAGAAAAGAAAGTTCAA  1545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AAGAAAGCAGTAGCATTTCTTCCTTGAAAGATGAGTTTACTCAAAGAATTGCAGAAGCAGAAAAGAAAGTTCAA  1554

Query 1546  CTAGCCTGCAAAGAGAGAGATGCTGCTAAAAAGGAAATCAAAAACATAAAAGAAGAACTTGCCACTAGATTAAA  1619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CTAGCCTGCAAAGAGAGAGATGCTGCTAAAAAGGAAATCAAAAACATAAAAGAAGAACTTGCCACTAGATTAAA  1628

Query 1620  TAGTAGTGAAACTGCAGACCTTTTGAAAGAGAAAGATGAGCAGATCCGAGGGTTAATGGAAGAAGGAGAAAAAC  1693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TAGTAGTGAAACTGCAGACCTTTTGAAAGAGAAAGATGAGCAGATCCGAGGGTTAATGGAAGAAGGAGAAAAAC  1702

Query 1694  TTTCAAAACAGCAGCTGCACAATTCTAACATCATCAAGAAATTAAGAGCTAAAGACAAGGAGAATGAAAATATG  1767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTTCAAAACAGCAGCTGCACAATTCTAACATCATCAAGAAATTAAGAGCTAAAGACAAGGAGAATGAAAATATG  1776

Query 1768  GTTGCAAAGCATGAACAAAAAAGTTAAAGAGCTAGAAGAGGAGTTGCAGCATTTGAAACAGGTCCTTGATGGCA  1841
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GTTGCAAAGC-TGAACAAAAAAGTTAAAGAGCTAGAAGAGGAGTTGCAGCATTTGAAACAGGTCCTTGATGGCA  1849

Query 1842  AAGAAGAGGTTGAGAAACAACATAGAGAAAATATTAAAAAACTAAATTCCATGGTAGAACGCCAAGAGAAAGAT  1915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850  AAGAAGAGGTTGAGAAACAACATAGAGAAAATATTAAAAAACTAAATTCCATGGTAGAACGCCAAGAGAAAGAT  1923

Query 1916  CTTGGCCGTCTTCAGGTAGACATGGATGAACTTGAAGAAAAGAACCGAAGTATTCAGGCTGCCCTGGATAGTGC  1989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924  CTTGGCCGTCTTCAGGTAGACATGGATGAACTTGAAGAAAAGAACCGAAGTATTCAGGCTGCCCTGGATAGTGC  1997

Query 1990  ATACAAAGAACTTACTGATCTTCACAAAGCCAATGCTGCAAAGGATAGTGAGGCACAGGAAGCTGCTCTGAGCC  2063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998  ATACAAAGAACTTACTGATCTTCACAAAGCCAATGCTGCAAAGGATAGTGAGGCACAGGAAGCTGCTCTGAGCC  2071

Query 2064  GTGAAATGAAAGCTAAAGAAGAACTTTCTGCAGCATTAGAGAAGGCCCAAGAAGAAGCCCGTCAGCAGCAAGAA  2137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072  GTGAAATGAAAGCTAAAGAAGAACTTTCTGCAGCATTAGAGAAGGCCCAAGAAGAAGCCCGTCAGCAGCAAGAA  2145

Query 2138  ACATTAGCCATTCAAGTGGGGGACCTTAGGCTTGCATTGCAGCGTACAGAACAAGCGGCTGCCAGAAAGGAGGA  2211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146  ACATTAGCCATTCAAGTGGGGGACCTTAGGCTTGCATTGCAGCGTACAGAACAAGCGGCTGCCAGAAAGGAGGA  2219

Query 2212  TTATTTACGCCATGAGATCGGTGAACTTCAGCAGAGACTCCAGGAAGCAGAGAATCGAAACCAGGAACTGAGTC  2285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220  TTATTTACGCCATGAGATCGGTGAACTTCAGCAGAGACTCCAGGAAGCAGAGAATCGAAACCAGGAACTGAGTC  2293

Query 2286  AAAGTGTTTCATCAACAACAAGACCATTGCTTCGACAAATAGAAAATTTGCAAGCAACCCTGGGATCCCAGACA  2359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294  AAAGTGTTTCATCAACAACAAGACCATTGCTTCGACAAATAGAAAATTTGCAAGCAACCCTGGGATCCCAGACA  2367

Query 2360  TCGTCGTGGGAGAAATTAGAGAAGAATCTTTCTGATAGGCTTGGTGAATCCCAGACCTTGCTGGCAGCAGCAGT  2433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368  TCGTCGTGGGAGAAATTAGAGAAGAATCTTTCTGATAGGCTTGGTGAATCCCAGACCTTGCTGGCAGCAGCAGT  2441

Query 2434  TGAGAGAGAACGTGCAGCTACAGAAGAACTCCTTGCTAACAAAATTCAGATGTCTTCCATGGAGTCACAGAATT  2507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2442  TGAGAGAGAACGTGCAGCTACAGAAGAACTCCTTGCTAACAAAATTCAGATGTCTTCCATGGAGTCACAGAATT  2515

Query 2508  CTCTTTTAAGACAGGAAAACAGTAGATTTCAAGCCCAGCTAGAATCAGAGAAAAATAGGCTGTGTAAACTGGAG  2581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516  CTCTTTTAAGACAGGAAAACAGTAGATTTCAAGCCCAGCTAGAATCAGAGAAAAATAGGCTGTGTAAACTGGAG  2589

Query 2582  GATGAGAACAATAGGTACCAGGTTGAATTGGAAAACCTAAAAGATGAATATGTAAGAACACTTGAAGAGACGAG  2655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590  GATGAGAACAATAGGTACCAGGTTGAATTGGAAAACCTAAAAGATGAATATGTAAGAACACTTGAAGAGACGAG  2663

Query 2656  GAAAGAAAAGACATTGTTGAATAGTCAGTTAGAAATGGAAAGAATGAAAGTTGAACAAGAAAGGAAGAAAGCCA  2729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664  GAAAGAAAAGACATTGTTGAATAGTCAGTTAGAAATGGAAAGAATGAAAGTTGAACAAGAAAGGAAGAAAGCCA  2737

Query 2730  TTTTTACTCAAGAAACAATAAAAGAAAAGGAACGCAAGCCATTTTCTGTTTCTAGCACTCCCACCATGTCACGC  2803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2738  TTTTTACTCAAGAAACAATAAAAGAAAAGGAACGCAAGCCATTTTCTGTTTCTAGCACTCCCACCATGTCACGC  2811

Query 2804  TCAAGTTCAATAAGTGGTGTTGATATGGCAGGACTACAGACATCTTTTCTGTCTCAGGATGAGTCTCATGATCA  2877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2812  TCAAGTTCAATAAGTGGTGTTGATATGGCAGGACTACAGACATCTTTTCTGTCTCAGGATGAGTCTCATGATCA  2885

Query 2878  CTCATTTGGACCAATGCCTATATCAGCAAATGGAAGCAATCTTTATGATGCTGTAAGGATGGGAGCAGGATCAA  2951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2886  CTCATTTGGACCAATGCCTATATCAGCAAATGGAAGCAATCTTTATGATGCTGTAAGGATGGGAGCAGGATCAA  2959

Query 2952  GCATAATTGAAAACCTACAGTCTCAGCTAAAGCTAAGGGAAGGGGAAATCACTCATTTACAGCTAGAAATTGGC  3025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2960  GCATAATTGAAAACCTACAGTCTCAGCTAAAGCTAAGGGAAGGGGAAATCACTCATTTACAGCTAGAAATTGGC  3033

Query 3026  AATCTAGAAAAAACTCGATCAATAATGGCTGAAGAACTAGTTAAATTAACAAATCAAAATGATGAACTTGAAGA  3099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3034  AATCTAGAAAAAACTCGATCAATAATGGCTGAAGAACTAGTTAAATTAACAAATCAAAATGATGAACTTGAAGA  3107

Query 3100  GAAGGTGAAGGAGATACCCAAACTTAGAACTCAGCTAAGAGATTTGGATCAAAGGTACAACACTATTCTGCAGA  3173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3108  GAAGGTGAAGGAGATACCCAAACTTAGAACTCAGCTAAGAGATTTGGATCAAAGGTACAACACTATTCTGCAGA  3181

Query 3174  TGTATGGAGAAAAAGCAGAAGAGGCAGAAGAACTTCGATTAGATCTCGAAGATGTAAAAAATATGTACAAAACT  3247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3182  TGTATGGAGAAAAAGCAGAAGAGGCAGAAGAACTTCGATTAGATCTCGAAGATGTAAAAAATATGTACAAAACT  3255

Query 3248  CAAATAGATGAACTTTTAAGACAAAGTCTCAGT  3280
            |||||||||||||||||||||||||||||||||
Sbjct 3256  CAAATAGATGAACTTTTAAGACAAAGTCTCAGT  3288

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