Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14237
- Subject:
- XR_946722.2
- Aligned Length:
- 3168
- Identities:
- 1558
- Gaps:
- 1609
Alignment
Query 1 ---------------------------------------------------------------------ATGGA 5
|||||
Sbjct 1 CTCGCCGCTTGTGTGGCTCGCTGGCTGCGTGGCTCGGTTCTTGTGAGCGAAGCTTTGTCCGGTTCGGCAATGGA 74
Query 6 CG------------------------GAATCGTCACTGAGGTTGCAGTTGGCGTGAAGAGAGGATCTGACGAAC 55
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGGTATGTAATCGGGCCGGCGAGAAGAATCGTCACTGAGGTTGCAGTTGGCGTGAAGAGAGGATCTGACGAAC 148
Query 56 TACTCTCAGGCAGTGTTCTCAGTAGTCCGAACTCTAATATGAGCAGCATGGTAGTTACAGCCAATGGTAATGAT 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TACTCTCAGGCAGTGTTCTCAGTAGTCCGAACTCTAATATGAGCAGCATGGTAGTTACAGCCAATGGTAATGAT 222
Query 130 AGTAAAAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAATTACCTGG 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGTAAAAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAATTACCTGG 296
Query 204 GGAAGTAACAGAAACTGAAGTTATTGCTTTAGGCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAG 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGAAGTAACAGAAACTGAAGTTATTGCTTTAGGCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAG 370
Query 278 GAAAAAATCAGGCATTTTTGGAACTAGCAACCGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAAAAAATCAGGCATTTTTGGAACTAGCAACCGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTG 444
Query 352 ACACCTCATCTTCGTAACCAACCAATATATATCCAGTACTCGAATCACAAAGAACTAAAGACAGATAATACATT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACACCTCATCTTCGTAACCAACCAATATATATCCAGTACTCGAATCACAAAGAACTAAAGACAGATAATACATT 518
Query 426 AAACCAACGTGCTCAGGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAGTGGCACCA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAACCAACGTGCTCAGGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAGTGGCACCA 592
Query 500 CAGTTAGCGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAACATGTACTACCCT 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAGTTAGCGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAACATGTACTACCCT 666
Query 574 GTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATAATCACATTTACAAAAAA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTAACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATAATCACATTTACAAAAAA 740
Query 648 TAACCAGTTTCAAGCTTTGCTCCAGTATGGTGATCCAGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TAACCAGTTTCAAGCTTTGCTCCAGTATGGTGATCCAGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGTC 814
Query 722 AGAATATTTATAATGCCTGCTGTACCCTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAAC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGAATATTTATAATGCCTGCTGTACCCTAAGGATTGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAAC 888
Query 796 AATGATAAAAGTAGGGATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTAT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AATGATAAAAGTAGGGATTATACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTAT 962
Query 870 TGCTGCAGCATTTGCCAAGGAGACATCCCTCTTAGCTGTTCCAGGAGCTCTGAGTCCTTTGGCCATTCCAAATG 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCTGCAGCATTTGCCAAGGAGACATCCCTCTTAGCTGTTCCAGGAGCTCTGAGTCCTTTGGCCATTCCAAATG 1036
Query 944 CTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCTGGTGGCAATACAGTC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCTGGTGGCAATACAGTC 1110
Query 1018 CTGTTGGTTAGCAATTTAAATGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGTGTTTATGGAGA 1091
|||||||||||||||||||||||||| ||||||||||||||
Sbjct 1111 CTGTTGGTTAGCAATTTAAATGAAGA----------------------------------GGTGTTTATGGAGA 1150
Query 1092 TGTGCAGCGTGTGAAGATTTTATACAATAAGAAAGACAGCGCTCTAATACAGATGGCTGATGGAAACCAATCAC 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TGTGCAGCGTGTGAAGATTTTATACAATAAGAAAGACAGCGCTCTAATACAGATGGCTGATGGAAACCAATCAC 1224
Query 1166 AACTTGCCATGAATCATCTTAATGGACAGAAAATGTATGGAAAAATTATTCGTGTTACTCTGTCTAAACATCAG 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AACTTGCCATGAATCATCTTAATGGACAGAAAATGTATGGAAAAATTATTCGTGTTACTCTGTCTAAACATCAG 1298
Query 1240 ACTGTACAGCTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAAGATTTTGGTAATTCCCCATTGCATCG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 ACTGTACAGCTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAAGATTTTGGTAATTCCCCATTGCATCG 1372
Query 1314 TTTTAAGAAACCTGGATCCAAAAATTTTCAAAACATTTTTCCTCCTTCTGCCACCCTTCACCTATCTAATATCC 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TTTTAAGAAACCTGGATCCAAAAATTTTCAAAACATTTTTCCTCCTTCTGCCACCCTTCACCTATCTAATATCC 1446
Query 1388 CTCCATCAGTAGCAGAAGAGGATCTACGAACACTGTTCGCTAACACTGGGGGCACTGTGAAAGCATTTAAGTTT 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CTCCATCAGTAGCAGAAGAGGATCTACGAACACTGTTCGCTAACACTGGGGGCACTGTGAAAGCATTTAAGTTT 1520
Query 1462 TTTCAAAGAGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCTATTCAGGCCTTGATTGATCT 1535
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TTTCA---AGATCACAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCTATTCAGGCCTTGATTGATCT 1591
Query 1536 TCATAATTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCAAAGTCAACAATT------------- 1596
||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1592 TCATAATTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCCAAGTCAACAATTTAAAAATGGGAAG 1665
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 1666 ATGAAGATTGGGGGTGAATCACATTGTTCAATGTCATCACCTATTTGACTGTTCAGAAAAGTGGGGACCAGAGT 1739
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 1740 TTGATTTTTTTTGTTTTTGTTTTTTTGGGGTTTCTTTTTTTTTTCCATGCTGTTATCATTCCTTGGTTATAAAA 1813
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 1814 TGAAATGGCATATGTAAAGGCAGAGTTGTTAACTGCTATATTTCATCTGTTCTATAGGGAAGCCATTTTGTCTG 1887
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 1888 TTTAAAATTTCAGTTTAATTTTGCTTTTTTTTTTTTTTTTTTTTTCCTTTCAACTTAGTTGACATACGTGCCTT 1961
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 1962 AAAAAGGAAAACTAGTGTTGCTATTGTGCATTTACTAGAAAAAAGGAATTGGTTGTTTAGGGCACACTGTTATA 2035
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2036 TGGGAATTAAAATATGTTTAGGCAGGGGTGTGTAAAAAGGTTAAGTTTTTGTTTCTCCTGCTTGGAACTTATTT 2109
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2110 TGAATTACTGGCTTGTCACCTTTTTTTCTATTTAATCAAATAAGATACATGATATTGAAAGAATAAAGCAGCAT 2183
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2184 TTTTAGTTTTTACTACCTTAGGCTTTATTGCTTTGAAAACAACATTGGCCTTTTGTATCTCACAATTCTGGTCT 2257
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2258 AGATTCAGTTATGAATGTAGGCATTAGTTAAAATTAACAAGATGCAGAGTATTAATTTCTTAAGACAACAAAGT 2331
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2332 GATTTCTGTAAGTTTGAGCCCTATGTGGAAAGCATTGTGGAATCTTAACCTTTTCGTACACACTCTTGTGGGAC 2405
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2406 GTATCATATAAATGTCAGCACTAAGTAATGTCTTGTTTGTGGCTGAATATTTTTCGTAGATGTTTTTGAAGTTG 2479
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2480 ACATGACTTACGTGCATTTAAATATATATTGCCATCCTTAGTTTGTAATTAAGATTTGGAATATGGTTGTGGAT 2553
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2554 TTCTGAGCATGTGCAGACTGGTCTAGCTAGTTCAGGAACTGGTGCATGTATTTTTCAAAGATAAAGAAAGTGTA 2627
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2628 CTGCGAAAATATGCAGGAAGATTAATTTTGTGGCAGTTTTCTAAAACTGACAACCAGGTGGGACCAAAGTTTAT 2701
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2702 GTGCCTTTAGTCTTAATTTACCTTGCATTGTAATATTCAGTTTTAATAAATCTTCAAAATATTTTGTATTTAGG 2775
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2776 AATAGATCTGACTTTAATAAAAACATGGCTCAGAATCTACAGGTCAAATTAATTTGAACAGTTCTTGTCAATCC 2849
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2850 GAATTGTTGATTCTGTTTAAATGACCAATACTTTTTGAAATTGATGTACTTAGTTTCAAGATTCATAGATTCTG 2923
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2924 TTATCTATGTAGACAGAATGGTCATGTATATTTTCTATTAGTTGAGTTTTTACATCTTTAGAAATGTAAAATTC 2997
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2998 AGTATAGTTTGAAAGCGGCACAATTAAAAATTAATTTTCTAACAAAGTTGGGAGGTTTGATGGTTGTTTAATTT 3071
Query 1597 ------------------------------------------------------------ 1596
Sbjct 3072 CATTTTGTGTGTACTCTGCTTACCCCTGTAGCATGCTCAATAAACACTTCTGTAGCTCTA 3131
