Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14803
• Subject: NM_001323331.2
• Aligned Length: 1553
• Identities: 939
• Gaps: 476

Alignment

Query    1  ATGGCTGACCTAATAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCTCAGAA  74
                                                                     ||.|.||||    ||.|
Sbjct    1  ---------------------------------------------------------ATGAGCAGA----AGCA  13

Query   75  AG-GTGAGGTGC-----TGTTTCT------GAGCATTCCCAATT-GCGCTTCTACCAAATATTTAGCTGTGCTT  135
            || ||||    |     |.|||.|      |||        ||| |.|.||||||     |||.| |.||    
Sbjct   14  AGCGTGA----CAACAATTTTTATAGTGTAGAG--------ATTGGAGATTCTAC-----ATTCA-CAGT----  65

Query  136  GCCCCT--AACAGCCTGTTATCCTCTTTTAGGTAACTGTAAAAATGAAGACCAAATGAATAATTCAGCTCAGTA  207
               |||  |||     |.||||                 |.||.|.||.|||                    ||
Sbjct   66  ---CCTGAAAC-----GATATC-----------------AGAATTTAAAACC--------------------TA  94

Query  208  TAATCTGAGGA-CTTATTTTTCTAGGGATGGTGATCCGTTTCACACCTTCCACAAGCCAAGAGCTGGGTTTGAA  280
            ||..||.|||| |       ||.|||.||.|| ||.||     ||.|||         |.||            
Sbjct   95  TAGGCTCAGGAGC-------TCAAGGAATAGT-ATGCG-----CAGCTT---------ATGA------------  134

Query  281  TTGCCAACTTTCTTGTA--CAAAGTTGGCATTAT-AAGANAGCTNNG-------TTT--GAAT--------TGC  334
             |||||   ||||||.|  .||.||| |||  || |||| ||||..|       |||  ||||        |||
Sbjct  135  -TGCCA---TTCTTGAAAGAAATGTT-GCA--ATCAAGA-AGCTAAGCCGACCATTTCAGAATCAGACTCATGC  200

Query  335  CAA------CT------------TNCTTNTACAANNTNNNGCAACGAACAGGTCACTATCNNTNANAANAAAAN  390
            |||      ||            |.|||.|..||..|              ||.|  |||    |.||.||.|.
Sbjct  201  CAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGT--------------GTTA--ATC----ACAAAAATAT  254

Query  391  CATTG--CTTATCAATATTNNNNNNNCNGNNNANNTCNCTATCAGTATANNNANNNGTATTACANNNTCAT--A  460
            .||||  |||.|.|||.||.......|. ...|..||.|||..||.||....|...|| |||||...||||  |
Sbjct  255  AATTGGCCTTTTGAATGTTTTCACACCA-CAGAAATCCCTAGAAGAATTTCAAGATGT-TTACATAGTCATGGA  326

Query  461  GCTGTTTCCTGGCAGCTCTGGCCCGTGTCTCAAAATNTNTGCTATCCAGNTGNTNCAAATCGAGGCGCC--GAA  532
            ||    ||.|||..||                ||||.|.||    |||..||.|.||.||.|||    |  ||.
Sbjct  327  GC----TCATGGATGC----------------AAATCTTTG----CCAAGTGATTCAGATGGAG----CTAGAT  372

Query  533  C---AAAAAAGCTCCTACTATTTTGTTAAAAAACCCAAGTCGTTCTATAGCTGTGGATGTGT---ATCTACCAC  600
            |   |||.||..|||||                       |.||||.||.|.|..|.|||||   |||.|.|||
Sbjct  373  CATGAAAGAATGTCCTA-----------------------CCTTCTCTATCAGATGCTGTGTGGAATCAAGCAC  423

Query  601  CTCTTCATTCT-CGAGA---------CGGCAGAGCT----GCCC------------GCAAA--------GCACG  640
              ||||||||| |..||         |||.|   ||    ||||            |.|||        |||| 
Sbjct  424  --CTTCATTCTGCTGGAATTATTCATCGGGA---CTTAAAGCCCAGTAATATAGTAGTAAAATCTGATTGCAC-  491

Query  641  TTTTG----CTCTAGCACT--GATCT--------CTTCA--AATCATACAAAAGCTAT--TGACCTCTCTTGTT  696
             ||||    .|||.| |||  |.|||        ||.||  |     ||.|....|||  ||||..||..|||.
Sbjct  492  -TTTGAAGATTCTTG-ACTTCGGTCTGGCCAGGACTGCAGGA-----ACGAGTTTTATGATGACGCCTTATGTA  558

Query  697  G--------TACTA-AG-----------------TTGGTAT--TATACACAGA----GTG--ATTATCATTTGT  736
            |        ||||| ||                 ||||.||  ..||||..||    |||  .||||..|.|||
Sbjct  559  GTGACTCGCTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAACGTGGATTTATGGTCTGT  632

Query  737  ----TGCTTCGTAGTGACCGTAGAGA-----------AAAATACACT---------------------ATTAGT  774
                |||.|  || ||   |.|||.|           |||||.|.||                     ||.|||
Sbjct  633  GGGGTGCAT--TA-TG---GGAGAAATGGTTTGCCACAAAATCCTCTTTCCAGGAAGGGACTATATTGATCAGT  700

Query  775  GTCCCCTGA----------TGATC-GCCCG----ACCAGAGAGTCATGAATCTATGGCAG-AACTCCTCCCAAC  832
            |      ||          |||.| ||..|    ||||   .|||.|||||..|| |.|| ||||.|..|||||
Sbjct  701  G------GAATAAAGTTATTGAACAGCTTGGAACACCA---TGTCCTGAATTCAT-GAAGAAACTGCAACCAAC  764

Query  833  AGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCTTT  906
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  765  AGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCTTT  838

Query  907  TCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAATA  980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  839  TCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAATA  912

Query  981  GATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCTGA  1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  913  GATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCTGA  986

Query 1055  AGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAAAG  1128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  987  AGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAAAG  1060

Query 1129  AATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTCCT  1202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061  AATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTCCT  1134

Query 1203  TTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATGTC  1276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135  TTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATGTC  1208

Query 1277  AACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAGA  1349
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209  AACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAGA  1281