Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15089
Subject:
XR_001737470.1
Aligned Length:
2486
Identities:
1636
Gaps:
781

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGCATTTCCGTCGCCGGGAGGAAGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGAGGCTGCTCCCAGCCGCGCCCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTG  148

Query    1  -----ATGTCGTGGCTCTTCGGCATTAACAAGGGCCCCAAGGGTGAAGACGCGGGGCCGCCGCCGCCTTTGCCG  69
                 ||||||||||||||||||.||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct  149  CGAGCATGTCGTGGCTCTTCGGCGTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCG  222

Query   70  CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGCTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG  143
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  223  CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG  296

Query  144  CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGG  217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  297  CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGG  370

Query  218  ACGCCCTGAATCTGGCACAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG  291
            |.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGCCCTGAATCTGGCGCAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG  444

Query  292  GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA  365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA  518

Query  366  GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC  439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC  592

Query  440  AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA  513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA  666

Query  514  GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCG  587
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  667  GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCG  740

Query  588  CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGA  661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  741  CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGA  814

Query  662  CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGAC  735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct  815  CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGAC  888

Query  736  AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTG  808
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|
Sbjct  889  AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CG  961

Query  809  TCGCCGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTT  882
            ||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  962  TCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTG  1035

Query  883  GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGT  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1036  GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGT  1109

Query  957  GCTCAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCC  1030
            |||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||..|||
Sbjct 1110  GCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCC  1183

Query 1031  TGTACAGGAACATCCTGATGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC  1104
            ||||||||.||||||||.||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  TGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC  1257

Query 1105  TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA  1331

Query 1179  CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTTCCTTC  1252
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct 1332  CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGG--------------------------------------  1367

Query 1253  GGAAGCGAGCCACCGAGAAGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGGGCCAG  1326
                          |||.||||||||.||||||||||.|||||||||||||||||||||||||.||.||||||.
Sbjct 1368  --------------GAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAA  1427

Query 1327  CACAGCAACAAGTTCATGCTGGTCCTGGCCAGCAACCAACCAGAGCAGTTCGACTGGGCCATCAATGACCGCAT  1400
            |||||||||||.|||||||||||||||||||||||.|..||.||||||||||||||.||||||||...||||||
Sbjct 1428  CACAGCAACAAATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCAT  1501

Query 1401  CAATGAGATGGTCCACTTCGACCTGCCAGGGCAGGAGGAACGGGAGCGCCTGGTGAGAATGTATTTTGACAAGT  1474
            ..|.|.|||||||||||||||||||||...|||||||||.||||||||||||||||||.||.||||||||||.|
Sbjct 1502  TGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACT  1575

Query 1475  ATGTTCTTAAGCCGGCCACAGAAGGAAAGCAGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCG  1548
            .|||||||||||||||||||||||||||.|.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576  GTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCG  1649

Query 1549  GAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGC  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650  GAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGC  1723

Query 1623  GTATGCCTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCAGCACC  1696
            .|||||||||.|||||||||||||.||.|||||||||||||||.||.|.|||||||||||||||||||||.|||
Sbjct 1724  ATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACC  1797

Query 1697  AGCAGAAGATGTGCTGGCTGAAGGCGGAAGGGCCTGGGCGTGGGGACGAGCCCTCCCCATCC------------  1758
            ..|||||||||.||||||||||||||||.|||||||||||.||||.|||||.|.|||.||||            
Sbjct 1798  GACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCAAGGC  1871

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 1872  GAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAGGAT  1945

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 1946  ATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGCCGT  2019

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 2020  TCTGCCCCCCAGGGCACCCCCTGTTGTAGGCACTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTCGAGACA  2093

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 2094  CTCTTGGGAGATGCATTTTCCGTCTGGCTCACAGGGGGAGGGTGAGGCTTTGTACCCCAGCCCCTGCCCAGGCC  2167

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 2168  ACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGGGGCAGAAGGAGTGGGGCAGGCGGGGTCTTTGTTCTCGGCTCC  2241

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 2242  CACAGCAGAGCCAGGTGAGGGGGGGCCTGCCAGGACTAGACAGAAGTGGGGCGGCCTGAACCCTGCTTCCAGCC  2315

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 2316  ATGGCCAGGGGCCACGGAACCCGGCAGGGGTGTCTGAGGCCGCCCTGTCAGCTGGCCGGTCCAAGCCTGTGGCT  2389

Query 1759  --------------------------------------------  1758
                                                        
Sbjct 2390  GGAGCTGGTGTGTGTTTATCTAATAAAGTCCCACAGGTGCCTCA  2433

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