Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15672
- Subject:
- NR_040724.2
- Aligned Length:
- 5133
- Identities:
- 1506
- Gaps:
- 3627
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTGTGCTGGTGAATGTGAGTACAGGGAAGCAGCGGCCGCCATTTCAGGGAGCTTGTCGACGCTGTCGCAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGATCCTGAGCTGCCGAAGCCGCCGTCCTGCTCTCCCGCGTGGGCTTCTCTAATTCCATTGTTTTTTTTAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCTCTCGGGCCTAGCCGTCCTTGGAACCCGATATTCGGGCTGGGCGGTTCCGCGGCCTGGGCCTAGGGGCTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACAGTAGCAACAGAAGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAATCTCTTCCCGAACACGAGCACC 296
Query 1 -------------------------------------ATGGCAGACGATATTGATATTGAAGCAATGCTTGAGG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGGCGCCCGAAGGCCGGAACAGGCGTTTAGAGAAAATGGCAGACGATATTGATATTGAAGCAATGCTTGAGG 370
Query 38 CTCCTTACAAG--------------------------------------------------------------- 48
|||||||||||
Sbjct 371 CTCCTTACAAGAAGACTTGCCTAACGATATCTCACCTCTACTCCCATGAATTCACCTTTGATTCCAGTGTGAAC 444
Query 49 ----------AAGGATGAGAACAAGTTGAGCAGTGCCAACGGCCATGAAGAACGTAGCAAAAAGAGGAAAAAAA 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTCAATCATAAGGATGAGAACAAGTTGAGCAGTGCCAACGGCCATGAAGAACGTAGCAAAAAGAGGAAAAAAA 518
Query 113 GCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAA 592
Query 187 AGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCG 666
Query 261 AGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTA-------------------------------------- 296
||||||||||||||||||||||||||||||||||||
Sbjct 667 AGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGA 740
Query 297 ----------------------------CAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGC 342
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGC 814
Query 343 CCTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGC 888
Query 417 GGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTT 962
Query 491 CTGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCA 1036
Query 565 ATAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGC 1110
Query 639 TGCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCA 1184
Query 713 ACATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGAC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGAC 1258
Query 787 AGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGA 1332
Query 861 ACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGA 1406
Query 935 GTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAG 1480
Query 1009 TTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGG 1554
Query 1083 CTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACTG 1156
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1555 CTCTTTGGCATTTGGTGCTGTGGC------------------AGATTTGCAAACAAGACTTTCCCAGCAGACTG 1610
Query 1157 AAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTT 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 AAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTT 1684
Query 1231 AACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 AACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACA 1758
Query 1305 TGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 TGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTG 1832
Query 1379 CTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 CTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTA 1906
Query 1453 CCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGA-- 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 CCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGATG 1980
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 1981 AAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTA 2054
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2055 GATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTT 2128
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2129 AACAGGAATGCAGTGTGCTCATTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCC 2202
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2203 TTTTAAAATGTTCATGTAGAAAATTAATGAACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAA 2276
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2277 AGGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACACAGTGGTTACATTTCACATTT 2350
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2351 CACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGGAAATACAAGACAG 2424
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2425 CTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATA 2498
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2499 TTTCTTGATGGTATCTTTTCAATTAATGTATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCT 2572
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2573 TAAAATTCCAAACAAAATGATCCCTGCATTTCCTGAAGATGTTTAAACGTGAGAGTCTGGTAGGCAAAGCAGTC 2646
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2647 TGAGAAAGAAATAGGAAATGCAGAAATAGGTTTTGTCTGGTTGCATATAATCTTTGCTCTTTTTAAGCTCTGTG 2720
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2721 AGCTCTGAAATATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTTGATATTTCTATCAAACAAATGAC 2794
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2795 TTTCATATTGCAACAATCTTTGTAAGAACCACTCAAATAAAAGTCTCTTAAAAAGGCCACAGGAGATCTTCATT 2868
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2869 TTTCAAATGTTTTAAAGTTACAGAAATTTGAGAACAGAATTAGCTTCTTTTAGTCTCAATTCAGTACTTGCCTC 2942
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2943 TTGGGAAAATGTTCCGAGTCTGCGGAAACTTGCCCTCACGTTGTCCCCCATGAATTCCTTTATTCTATTAGAGT 3016
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3017 CTAGCCCTGTGTATTTTAGAAGAATGTATCAAAACTGAGGGGTTTACCAAAAAGAAAAGGAAACAGCCTGGCCT 3090
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3091 TAAAACCTGGGCATTCTTGGTCTCCTGCATTGTCTGGGCATATTTATGAAGAAATTTTCACCATTTACAATACA 3164
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3165 TACTTAACAAAATGGCTTAACTTCAAACTGGTTTCCAAAATTGATTTATATATTAATATATTAAATAAGGTGCA 3238
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3239 TATATTACTGTATTAAGGGGTTTTGAGCTTTCATACTAGTTGGGAAGCAAGCTGTCACCATTTATACTCAATTC 3312
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3313 TCTTCAACTGTTTATCTCTTGGTAAATCTTTTGAGTAGGAAATGCTGCTCCTAGCTTATCTTCAAATACTGAGT 3386
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3387 TCCTTACCTCATTTGTTCAACTTTTTTTTTTGTTAGCATTGAAGCACAAGTTTTACAGGCTTATTCAGAATTTC 3460
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3461 ATATCAGTCGTTTTGTTTGACATTTATCCCAATAATTGTTCTAGTGATTTAATTTGTATGGAAACTCCCAAGGT 3534
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3535 TCAATTTCTTTTTCTTTTTGAGATGGAGTCTTGCTCTTTGGCCCAGGCTGGAGTGCAGTGATGTGATCTCAGCT 3608
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3609 CCATCTCCCAGGTTCAAGCAATTCTCCCACCTCAGTCTCCTGAAGAGCTGGGACAGGTGCGCACCACCGTGCCC 3682
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3683 AGCTAATTTTTGTATTTTTAGCAGAGACGGTGTTAGCCCGGCTGGTCTCACACTGACCTCAAGTGATCTGTCCG 3756
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3757 CCTTGGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCCACCGCGCCCAGCCTCATTGAAAATTTACTTTTCAA 3830
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3831 TACCAGACTGCAGAGTTCTTTGGGGCAGAGACACTCTGTCAGTGTGCTCTTTTTCCAAAGTATCTCCTGCTATC 3904
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3905 AGTTTTTCCCCTTGAACCAAGTCTTCCTAACAAATTTGTTGTGTCATTGCTTTCTAGGGAACTGGACCAGCAAA 3978
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3979 TGTGGCCTTTAGTGGTTAATCTCATCTGTGCCAAAATTTAGTTGCTACCAGAGTGAAATTTGGTGTGTAAATAA 4052
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4053 TGTTCAGAGGAAATGTGGTTGGAGTGTAGTAACTTGAATAGTGTCGTGCATAGAAAACAGCTCATTCTGAGTGA 4126
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4127 AACTGTTTATGTCCAATCAGTTCCTGAGTCAGCATCCCACTGGTTCGAAAATCTGTAACTAATCTGGTAATGTC 4200
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4201 CTTAATTTCCTCCTGCCTGTCAGTGTTCCAAAGTGTTCATCTAGTTTTCTTTTATCTTTATAATAATTACTACC 4274
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4275 ATCTTTGAAAGTTCTGTTTAAGAAATGCTTAATGGGCAATGCGGGTTAGTAACTCCAGGGTCTGCGTGGCCTGG 4348
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4349 GCAGGTGAGATGGACAACTGCCTCATTACAGAAGCTTTTTATCATCAAACTAGTAAGTTTTGTGGAGGGCAAGC 4422
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4423 TATATAGATTGTTGATGAGTGGTTAGAAAATCATCTGGAATTTAGCCAGTTGAGAAGCTACAGAAGTTTCTATT 4496
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4497 TTTTTTTACAGTGGATGAACTGTTTTGCTTTTTCTGATAAAGCCACTAGGTATATCTAAATAACAACCTCGGGC 4570
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4571 TGGACGTGGTGCCTTATGCCTGTATATGTGAACACTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAAGAGTTT 4644
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4645 GAGACCAGCCTGGCCAACACAGTGAAACCCCGTCTCTACTAAGAATACAAATTTTTTTTGTTTTGAGACAGAGT 4718
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4719 CTCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCTCGATCTCAGCTCACTGCAACCTCCACCTTCTGGGTTCAAG 4792
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4793 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAATACAGGCGCGTGTCAACACACCCGGCTTAAGTTTTTGT 4866
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4867 ATTTTTAGTAGAGACGGGGTGTCACCGTGTTACCCAAGATGGTCTCCATCTCCTGACCTTGTGATCCACCAGCC 4940
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4941 TTTGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGCGCCCAGCCTAACAATACAAAATTTAGCTAGGC 5014
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 5015 ATGGTGGCACGTGCCTGTTATCACAGCTACTCGGGAGGCTGAGGCAGGAGAAACGCTTGAACACAGGAGGCAGA 5088
Query 1525 --------------------------- 1524
Sbjct 5089 AGTTGCGGTAAGCCGAGATCGTGCCAC 5115
