Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_00229
• Subject: NM_009821.3
• Aligned Length: 1443
• Identities: 1048
• Gaps: 285

Alignment

Query    1  ATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAGAATGCATACTTGGAAT  74
                                                                       ||||.||        
Sbjct    1  -----------------------------------------------------------ATGCGTA--------  7

Query   75  GAATCCTTCTAGAGACGTCCAC---GATGCCAGCACGAGCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGCC  145
                             |||.|   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    8  -----------------TCCCCGTAGATGCCAGCACGAGCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGCC  64

Query  146  CAGGCAAGATGAGCGAGGCGTTGCCGCTGGGCGCCCCGGACGCCGGCGCTGCCCTGGCCGGCAAGCTGAGGAGC  219
            |.||||||||||||||||||.|||||||||||||||||||.|.||||||.|||||||||.||||||||||||||
Sbjct   65  CCGGCAAGATGAGCGAGGCGCTGCCGCTGGGCGCCCCGGATGGCGGCGCCGCCCTGGCCAGCAAGCTGAGGAGC  138

Query  220  GGCGACCGCAGCATGGTGGAGGTGCTGGCCGACCACCCGGGCGAGCTGGTGCGCACCGACAGCCCCAACTTCCT  293
            |||||||||||||||||||||||.||.||.||||||||.||||||||.||||||||||||||||||||||||||
Sbjct  139  GGCGACCGCAGCATGGTGGAGGTACTAGCTGACCACCCTGGCGAGCTAGTGCGCACCGACAGCCCCAACTTCCT  212

Query  294  CTGCTCCGTGCTGCCTACGCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCCCTAGGGG  367
            ||||||||||||.||.||.|||||||||||||||||||||||||||||||||||||||||||||||.||.||||
Sbjct  213  CTGCTCCGTGCTACCCACTCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCACTGGGGG  286

Query  368  ATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCT  441
            |.||.||.|||||||||||||||||.||.|||||.|||||.|||||||||||||||||.||.||||||||||||
Sbjct  287  ACGTCCCGGATGGCACTCTGGTCACCGTCATGGCAGGCAACGATGAAAACTACTCGGCAGAACTGAGAAATGCT  360

Query  442  ACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAGGGAAAAG  515
            |||||.|||||||||||||||||.||.|||||.||.|||||||||||||||||.||.||.||.|||||.||.||
Sbjct  361  ACCGCGGCCATGAAGAACCAGGTAGCGAGATTCAACGACCTCAGGTTTGTCGGGCGGAGCGGTAGAGGCAAGAG  434

Query  516  CTTCACTCTGACCATCACTGTCTTCACAAACCCACCGCAAGTCGCCACCTACCACAGAGCCATCAAAATCACAG  589
            ||||||||||||||||||.|||||.|||||.||.||.|||||.|||||||||||.|||||||||||||||||||
Sbjct  435  CTTCACTCTGACCATCACCGTCTTTACAAATCCGCCACAAGTTGCCACCTACCATAGAGCCATCAAAATCACAG  508

Query  590  TGGATGGGCCCCGAGAACCTCGAAGACATCGGCAGAAACTAGATGATCAGACCAAGCCCGGGAGCTTGTCCTTT  663
            ||||.||.|||||||||||.||||                                                  
Sbjct  509  TGGACGGCCCCCGAGAACCCCGAA--------------------------------------------------  532

Query  664  TCCGAGCGGCTCAGTGAACTGGAGCAGCTGCGGCGCACAGCCATGAGGGTCAGCCCACACCACCCAGCCCCCAC  737
                                                                                      
Sbjct  533  --------------------------------------------------------------------------  532

Query  738  GCCCAACCCTCGTGCCTCCCTGAACCACTCCACTGCCTTTAACCCTCAGCCTCAGAGTCAGATGCAGGATACAA  811
                                                                                ||.|.|
Sbjct  533  --------------------------------------------------------------------ATGCCA  538

Query  812  GGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCT  885
            ||||||||||.||||||||||||||||||||.||.|||||||||||.||||||||||||||..|||||.|.|||
Sbjct  539  GGCAGATCCAGCCATCCCCACCGTGGTCCTATGACCAGTCCTACCAGTACCTGGGATCCATCACCTCTTCCTCT  612

Query  886  GTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCG  959
            ||.||||||||.||.|||||||||||.||.|||||||||||||||||.|.||||||||||||||||||||||||
Sbjct  613  GTCCACCCAGCGACACCCATTTCACCCGGCCGTGCCAGCGGCATGACCAGCCTCTCTGCAGAACTTTCCAGTCG  686

Query  960  ACTCTCAACGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGACC  1033
            ||||||||||||.||.||||||||.||.|||.|||||||.|||||||||||..|.|||||.|||||||||||||
Sbjct  687  ACTCTCAACGGCTCCGGACCTGACCGCCTTCGGCGACCCACGCCAGTTCCCTACTCTGCCGTCCATCTCCGACC  760

Query 1034  CCCGCATGCACTATCCAGGCGCCTTCACCTACTCCCCGACGCCGGTCACCTCGGGCATCGGCATCGGCATGTCG  1107
            |.|||||||||||.|||||||||||||||||||   ||.||||.|||||.|||||||||||||||||||||||.
Sbjct  761  CGCGCATGCACTACCCAGGCGCCTTCACCTACT---CGCCGCCCGTCACGTCGGGCATCGGCATCGGCATGTCA  831

Query 1108  GCCATGGGCTCGGCCACGCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCGTCGCAAGCGCAGGGAGG  1181
            ||||||.||||||||.|.||||||||||||||||||||||||||||||||||||||.||.||.|||||||..||
Sbjct  832  GCCATGAGCTCGGCCTCTCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCATCACAGGCGCAGGCCGG  905

Query 1182  CCCGTTCCAAGCCAGCTCGCCCTCCTACCACCTGTACTACGGCGCCTCGGCCGGCTCCTACCAGTTCTCCATGG  1255
            .||.|||||..||.||||||||||||||||.||.||||||||||||||||||||.|||||||||||||||||||
Sbjct  906  GCCCTTCCAGACCGGCTCGCCCTCCTACCATCTATACTACGGCGCCTCGGCCGGTTCCTACCAGTTCTCCATGG  979

Query 1256  TGGGCGGCGAGCGCTCGCCGCCGCGCATCCTGCCGCCCTGCACCAACGCCTCCACCGGCTCCGCGCTGCTCAAC  1329
            |||||||.|||.|.|||||.|||||||||||||||||||||||||||||.|||||||||.||||||||||||||
Sbjct  980  TGGGCGGAGAGAGATCGCCCCCGCGCATCCTGCCGCCCTGCACCAACGCATCCACCGGCGCCGCGCTGCTCAAC  1053

Query 1330  CCCAGCCTCCCGAACCAGAGCGACGTGGTGGAGGCCGAGGGCAGCCACAGCAACTCCCCCACCAACATGGCGCC  1403
            |||||||||||.|.|||||||||||||||||||.|||||||||||||.||||||||.|||||||||||   |||
Sbjct 1054  CCCAGCCTCCCCAGCCAGAGCGACGTGGTGGAGACCGAGGGCAGCCATAGCAACTCGCCCACCAACAT---GCC  1124

Query 1404  CTCCGCGCGCCTGGAGGAGGCCGTGTGGAGGCCCTAC  1440
            |.||||||||||||||||||||||||||.||||||||
Sbjct 1125  CCCCGCGCGCCTGGAGGAGGCCGTGTGGCGGCCCTAC  1161