Construct: ORF ccsbBroadEn_00229

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004283.1_s300c1, BRDN0000456488
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RUNX1 (861)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 861 RUNX1 RUNX family transcription f... NM_001754.4 100% 100%
2 human 861 RUNX1 RUNX family transcription f... XM_011529766.2 100% 100%
3 human 861 RUNX1 RUNX family transcription f... XM_011529767.2 97.2% 97.2% 57_58ins39
4 human 861 RUNX1 RUNX family transcription f... XM_005261068.3 95.3% 94.1% (many diffs)
5 human 861 RUNX1 RUNX family transcription f... NM_001001890.3 93.8% 93.5% (many diffs)
6 human 861 RUNX1 RUNX family transcription f... XM_017028487.1 89.3% 89.3% 0_1ins153
7 human 861 RUNX1 RUNX family transcription f... XM_005261069.4 86.6% 86.4% 613_614ins192
8 human 861 RUNX1 RUNX family transcription f... XM_011529768.2 83.9% 83.7% 57_58ins39;574_575ins192
9 human 861 RUNX1 RUNX family transcription f... XM_011529770.2 57.2% 56.2% (many diffs)
10 human 861 RUNX1 RUNX family transcription f... NM_001122607.2 51.2% 49.7% (many diffs)
11 human 861 RUNX1 RUNX family transcription f... XR_937576.2 27.2% (many diffs)
12 mouse 12394 Runx1 runt related transcription ... NM_001111021.2 88.6% 93.3% (many diffs)
13 mouse 12394 Runx1 runt related transcription ... NM_001111023.2 85.4% 89.5% (many diffs)
14 mouse 12394 Runx1 runt related transcription ... NM_001111022.2 75.8% 79.7% (many diffs)
15 mouse 12394 Runx1 runt related transcription ... NM_009821.3 72.6% 76% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1509
ORF length:
1440
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTTCAGAC AGCATATTTG AGTCATTTCC TTCGTACCCA CAGTGCTTCA
121TGAGAGAATG CATACTTGGA ATGAATCCTT CTAGAGACGT CCACGATGCC AGCACGAGCC
181GCCGCTTCAC GCCGCCTTCC ACCGCGCTGA GCCCAGGCAA GATGAGCGAG GCGTTGCCGC
241TGGGCGCCCC GGACGCCGGC GCTGCCCTGG CCGGCAAGCT GAGGAGCGGC GACCGCAGCA
301TGGTGGAGGT GCTGGCCGAC CACCCGGGCG AGCTGGTGCG CACCGACAGC CCCAACTTCC
361TCTGCTCCGT GCTGCCTACG CACTGGCGCT GCAACAAGAC CCTGCCCATC GCTTTCAAGG
421TGGTGGCCCT AGGGGATGTT CCAGATGGCA CTCTGGTCAC TGTGATGGCT GGCAATGATG
481AAAACTACTC GGCTGAGCTG AGAAATGCTA CCGCAGCCAT GAAGAACCAG GTTGCAAGAT
541TTAATGACCT CAGGTTTGTC GGTCGAAGTG GAAGAGGGAA AAGCTTCACT CTGACCATCA
601CTGTCTTCAC AAACCCACCG CAAGTCGCCA CCTACCACAG AGCCATCAAA ATCACAGTGG
661ATGGGCCCCG AGAACCTCGA AGACATCGGC AGAAACTAGA TGATCAGACC AAGCCCGGGA
721GCTTGTCCTT TTCCGAGCGG CTCAGTGAAC TGGAGCAGCT GCGGCGCACA GCCATGAGGG
781TCAGCCCACA CCACCCAGCC CCCACGCCCA ACCCTCGTGC CTCCCTGAAC CACTCCACTG
841CCTTTAACCC TCAGCCTCAG AGTCAGATGC AGGATACAAG GCAGATCCAA CCATCCCCAC
901CGTGGTCCTA CGATCAGTCC TACCAATACC TGGGATCCAT TGCCTCTCCT TCTGTGCACC
961CAGCAACGCC CATTTCACCT GGACGTGCCA GCGGCATGAC AACCCTCTCT GCAGAACTTT
1021CCAGTCGACT CTCAACGGCA CCCGACCTGA CAGCGTTCAG CGACCCGCGC CAGTTCCCCG
1081CGCTGCCCTC CATCTCCGAC CCCCGCATGC ACTATCCAGG CGCCTTCACC TACTCCCCGA
1141CGCCGGTCAC CTCGGGCATC GGCATCGGCA TGTCGGCCAT GGGCTCGGCC ACGCGCTACC
1201ACACCTACCT GCCGCCGCCC TACCCCGGCT CGTCGCAAGC GCAGGGAGGC CCGTTCCAAG
1261CCAGCTCGCC CTCCTACCAC CTGTACTACG GCGCCTCGGC CGGCTCCTAC CAGTTCTCCA
1321TGGTGGGCGG CGAGCGCTCG CCGCCGCGCA TCCTGCCGCC CTGCACCAAC GCCTCCACCG
1381GCTCCGCGCT GCTCAACCCC AGCCTCCCGA ACCAGAGCGA CGTGGTGGAG GCCGAGGGCA
1441GCCACAGCAA CTCCCCCACC AACATGGCGC CCTCCGCGCG CCTGGAGGAG GCCGTGTGGA
1501GGCCCTACTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa
1561tttgttgcaa cgaac

Download FASTA (ORF) (Full)