Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00841
- Subject:
- XR_949402.3
- Aligned Length:
- 4473
- Identities:
- 1110
- Gaps:
- 3340
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGATGAACGATGAACCTCAGGCTGAGCGCCTCACGGTTTCCTCATGTCACCGGGGCTGGGGGTGCAGTTTGGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCACACTGCTAGGTCTTTTCTTGTTTTTAAGGGGGCAGGGGCTGTCACCTCTGAGGAGTCAGCTGTGATTGATC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCTCCACACCCAGCCAAGCACCCCCCAGACAGGGGAGCGCCCGCAGTAGGGCGGTAGGCAAGGGCAGTTCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCAACAGTCCCTAAATCATCCCAGCGGGGGCGCGGGAAATTCCACCGAGGTGAAAGCCTAGGGGGCCGGGTGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGAAATCCCCATACCCGGGCCCAGAAACCGCTCCAGGTGGAAGTAACTTGTCTAAAGAGAACAGGGTGTAACGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGGTCATTTCAGGGCTGTTCTTTTAAATCGGTGAGCACGGTCTGTCTACTTTCCCTCAGTTGTCTAGAGACCAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACGCCACCCCCGCCCCGGGGGAGTCGCCCGGTCGAGGGTCCCGGGACAGGCGCAGCACTCGCAGCATCCGGACC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGTCTGCCTCGCGCCGGGAGCGGCCTCTTTAAGAGCGGCCGCGGCCAACGTGCTCCGTGACGTCAGAGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTTTTCAGGGGGGTGTCATA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTGCCCCGCGTCCCTGCCGA 740
Query 1 ---------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAA 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAA 814
Query 54 AGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAGGTGAGCAGATTGCCA 127
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATC------------------------ 864
Query 128 TCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCATGAGAAGG 201
|||
Sbjct 865 -----------------------------------------------------------------------AGG 867
Query 202 CTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCC 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCC 941
Query 276 CCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTC 1015
Query 350 TGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATC 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATC 1089
Query 424 ATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 ATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGA 1163
Query 498 CCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCC 1237
Query 572 CAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGC 1311
Query 646 ATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGA 1385
Query 720 GGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATC 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATC 1459
Query 794 TTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGC 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGC 1533
Query 868 ACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATAT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 ACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATAT 1607
Query 942 CTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 CTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCA 1681
Query 1016 GAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 GAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCC 1755
Query 1090 GATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGTACACAC----------C 1149
|||||||||||||||||||||||||||||||||||| .|||| ||| ||||| .
Sbjct 1756 GATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAG----GGC------CACACATTGGACATGG 1819
Query 1150 ATCCTGTTTACCTTGGCTGTGCCTCCTGGGAAACTCAAC----ACACTTTCAGATTT-----------CAATTC 1208
|||.||||| ||..||.||.|..| .|.|||.|||.| |.|| ||||||.| |||
Sbjct 1820 ATCTTGTTT---TTCTCTTTGACAAC-AGTAAAATCACCTATGAGAC--TCAGATCTCCCCACGGCCCCAA--- 1884
Query 1209 TGCTT-----TGTCA--TGTAGTCTGTTAATCACACAGTGC------GGATACCTGGCTGGTTTT--------- 1260
|.| ||||| ||||..|| ||| ||.|| ||| |.||.|| .||.|
Sbjct 1885 --CCTGAAAGTGTCAGCTGTATCCT-----TCA---AGAGCCCAAGAGGA-ATCTCGC--CTTCTTCCAGCTGA 1945
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1946 GGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCAGGGACAG 2019
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2020 CGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTTCCATGTC 2093
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2094 TCAGCAGCTCAAGGCCAAGTTGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAAA 2167
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2168 CCGAGTTTGGGATCAGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTGGA 2241
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2242 CTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCTGT 2315
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2316 ACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGCTT 2389
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2390 CAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAGCA 2463
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2464 GAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGTCC 2537
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2538 GGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTGTC 2611
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2612 AGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACGGC 2685
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2686 CTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCTGC 2759
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2760 TAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGCCCTAGACTGGAGCTGGTTACAG 2833
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2834 ACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCATGATGTGGGGGGACTCGACCCCCTGACATGGGGCA 2907
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2908 GCCCATAGCAGGCCTTGTGCAGTGGGGGGACTCGACCCCCTGACATGGGGCTGCCTGGAGCAGGCCGCGTGACG 2981
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2982 TGGGGCTGCCTGGCCGCGGCTCTCACATGGTGGTTCCTGCTGCACTGATGGCCCAGGGGTCTCTGGTATCCAGA 3055
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3056 TGGAGCTCTCGCTTCCTCAGCAGCTGTGACTTTCACCCAGGACCCAGGACGCAGCCCTCCGTGGGCACTGCCGG 3129
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3130 CGCCTTGTCTGCACACTGGAGGTCCTCCATTACAGAGGCCCAGCGCACATCGCTGGCCCCACAAACGTTCAGGG 3203
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3204 GTACAGCCATGGCAGCTCCTTCCTCTGCCGTGAGAAAAGTGCTTGGAGTACGGTTTGCCACACACGTGACTGGA 3277
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3278 CAGTGTCCAATTCAAATCTTTCAGGGCAGAGTCCGAGCAGCGCTTGGTGACAGCCTGTCCTCTCCTGCTCTCCA 3351
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3352 AAGGCCCTGCTCCCTGTCCTCTCTCACTTTACAGCTTGTGTTTCTTCTGGATTCAGCTTCTCCTAAACAGACAG 3425
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3426 TTTAATTATAGTTGCGGCCTGGCCCCATCCTCACTTCCTCTTTTTATTTCACTGCTGCTAAAATTGTGTTTTTA 3499
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3500 CCTACTACTTTGGTGGTTGTCCTCTTTTCGGCAAAGTTGGAGCGAGTGCCAAGCTCTCCATCTGTGGTCCTTTC 3573
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3574 TGCCAAGAGCGACTCATAGTAACCAGGATGGGAGAGCAGCTGCCTTATTCTGAATCCCAAAAATTACTTGGGGG 3647
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3648 TGATTGTCACAGAGGAGGGACAGAAAGGGTATCTGCTGACCACCAGCCTGCCTACCCATGCCCATGTCTCCATT 3721
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3722 CCTGCTCAAGCGTGTGTGCTGGGCCGGGGAGTCCCTGTCTCTCACAGCATCTAGCAGTATTATTAAATGGATTC 3795
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3796 ATTTTAAAAATAGCTCCTATATTTTGTAACATGTCTCAAACACTCATACTGGGTTCCACAATCCACTGTTAGAA 3869
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3870 TACCTATGGTTAGGGCTTCTGAACTAAAATAATGGAAAATTTTAACAATTTGTATAGTGCCTGGATCATTACTA 3943
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3944 GTGCCATAACCCTGCTTCTTCAACATTTCACAGAACTTCTCTTTTATATAAAGGCAAGAGCACAAAATGAGTTC 4017
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 4018 AGATGATCACAAACAGGTGAGTTTTGTTGGAGAAGAAAGTTGGAGTAGGAGACTTTCACAAGTGGTTTCCATGG 4091
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 4092 AGATAGAATGAAGCATTCTGTGGTCAAGTAAGTTTAGGGAGCTATTCATGTTTCACTTGCTTTGTGGAGATTCA 4165
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 4166 CACTATGCACTGGGAAAGTATCTGAAAAGTCTTATAATAAAGAAACAGGCTTAACTTTGTGTAAGAACACTGTT 4239
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 4240 TATCAATGTCATTTGGCTATAGAAACATTTTCTCCTGCTGATTGTGTGTGTGAAACATGTATTAACATTCCAAT 4313
Query 1261 --------------------------------- 1260
Sbjct 4314 GAACTAGCATTTAATAAAGCACAATTTTGGAAA 4346
