Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00841
Subject:
XR_949402.3
Aligned Length:
4473
Identities:
1110
Gaps:
3340

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGATGAACGATGAACCTCAGGCTGAGCGCCTCACGGTTTCCTCATGTCACCGGGGCTGGGGGTGCAGTTTGGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCACACTGCTAGGTCTTTTCTTGTTTTTAAGGGGGCAGGGGCTGTCACCTCTGAGGAGTCAGCTGTGATTGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTCTCCACACCCAGCCAAGCACCCCCCAGACAGGGGAGCGCCCGCAGTAGGGCGGTAGGCAAGGGCAGTTCTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCAACAGTCCCTAAATCATCCCAGCGGGGGCGCGGGAAATTCCACCGAGGTGAAAGCCTAGGGGGCCGGGTGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAAATCCCCATACCCGGGCCCAGAAACCGCTCCAGGTGGAAGTAACTTGTCTAAAGAGAACAGGGTGTAACGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGTCATTTCAGGGCTGTTCTTTTAAATCGGTGAGCACGGTCTGTCTACTTTCCCTCAGTTGTCTAGAGACCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACGCCACCCCCGCCCCGGGGGAGTCGCCCGGTCGAGGGTCCCGGGACAGGCGCAGCACTCGCAGCATCCGGACC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGTCTGCCTCGCGCCGGGAGCGGCCTCTTTAAGAGCGGCCGCGGCCAACGTGCTCCGTGACGTCAGAGCAGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTTTTCAGGGGGGTGTCATA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTGCCCCGCGTCCCTGCCGA  740

Query    1  ---------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAA  53
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAA  814

Query   54  AGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAGGTGAGCAGATTGCCA  127
            ||||||||||||||||||||||||||||||||||||||||||||||||||                        
Sbjct  815  AGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATC------------------------  864

Query  128  TCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCATGAGAAGG  201
                                                                                   |||
Sbjct  865  -----------------------------------------------------------------------AGG  867

Query  202  CTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCC  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  868  CTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCC  941

Query  276  CCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTC  349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  942  CCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTC  1015

Query  350  TGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATC  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016  TGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATC  1089

Query  424  ATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGA  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090  ATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGA  1163

Query  498  CCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCC  571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164  CCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCC  1237

Query  572  CAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGC  645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238  CAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGC  1311

Query  646  ATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGA  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312  ATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGA  1385

Query  720  GGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATC  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386  GGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATC  1459

Query  794  TTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGC  867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460  TTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGC  1533

Query  868  ACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATAT  941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534  ACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATAT  1607

Query  942  CTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCA  1015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608  CTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCA  1681

Query 1016  GAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCC  1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682  GAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCC  1755

Query 1090  GATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGTACACAC----------C  1149
            ||||||||||||||||||||||||||||||||||||    .||||    |||      |||||          .
Sbjct 1756  GATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTTAAATGAG----GGC------CACACATTGGACATGG  1819

Query 1150  ATCCTGTTTACCTTGGCTGTGCCTCCTGGGAAACTCAAC----ACACTTTCAGATTT-----------CAATTC  1208
            |||.|||||   ||..||.||.|..| .|.|||.|||.|    |.||  ||||||.|           |||   
Sbjct 1820  ATCTTGTTT---TTCTCTTTGACAAC-AGTAAAATCACCTATGAGAC--TCAGATCTCCCCACGGCCCCAA---  1884

Query 1209  TGCTT-----TGTCA--TGTAGTCTGTTAATCACACAGTGC------GGATACCTGGCTGGTTTT---------  1260
              |.|     |||||  ||||..||     |||   ||.||      ||| |.||.||  .||.|         
Sbjct 1885  --CCTGAAAGTGTCAGCTGTATCCT-----TCA---AGAGCCCAAGAGGA-ATCTCGC--CTTCTTCCAGCTGA  1945

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1946  GGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCAGGGACAG  2019

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2020  CGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTTCCATGTC  2093

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2094  TCAGCAGCTCAAGGCCAAGTTGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAAA  2167

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2168  CCGAGTTTGGGATCAGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTGGA  2241

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2242  CTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCTGT  2315

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2316  ACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGCTT  2389

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2390  CAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAGCA  2463

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2464  GAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGTCC  2537

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2538  GGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTGTC  2611

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2612  AGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACGGC  2685

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2686  CTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCTGC  2759

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2760  TAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGCCCTAGACTGGAGCTGGTTACAG  2833

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2834  ACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCATGATGTGGGGGGACTCGACCCCCTGACATGGGGCA  2907

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2908  GCCCATAGCAGGCCTTGTGCAGTGGGGGGACTCGACCCCCTGACATGGGGCTGCCTGGAGCAGGCCGCGTGACG  2981

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2982  TGGGGCTGCCTGGCCGCGGCTCTCACATGGTGGTTCCTGCTGCACTGATGGCCCAGGGGTCTCTGGTATCCAGA  3055

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3056  TGGAGCTCTCGCTTCCTCAGCAGCTGTGACTTTCACCCAGGACCCAGGACGCAGCCCTCCGTGGGCACTGCCGG  3129

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3130  CGCCTTGTCTGCACACTGGAGGTCCTCCATTACAGAGGCCCAGCGCACATCGCTGGCCCCACAAACGTTCAGGG  3203

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3204  GTACAGCCATGGCAGCTCCTTCCTCTGCCGTGAGAAAAGTGCTTGGAGTACGGTTTGCCACACACGTGACTGGA  3277

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3278  CAGTGTCCAATTCAAATCTTTCAGGGCAGAGTCCGAGCAGCGCTTGGTGACAGCCTGTCCTCTCCTGCTCTCCA  3351

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3352  AAGGCCCTGCTCCCTGTCCTCTCTCACTTTACAGCTTGTGTTTCTTCTGGATTCAGCTTCTCCTAAACAGACAG  3425

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3426  TTTAATTATAGTTGCGGCCTGGCCCCATCCTCACTTCCTCTTTTTATTTCACTGCTGCTAAAATTGTGTTTTTA  3499

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3500  CCTACTACTTTGGTGGTTGTCCTCTTTTCGGCAAAGTTGGAGCGAGTGCCAAGCTCTCCATCTGTGGTCCTTTC  3573

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3574  TGCCAAGAGCGACTCATAGTAACCAGGATGGGAGAGCAGCTGCCTTATTCTGAATCCCAAAAATTACTTGGGGG  3647

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3648  TGATTGTCACAGAGGAGGGACAGAAAGGGTATCTGCTGACCACCAGCCTGCCTACCCATGCCCATGTCTCCATT  3721

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3722  CCTGCTCAAGCGTGTGTGCTGGGCCGGGGAGTCCCTGTCTCTCACAGCATCTAGCAGTATTATTAAATGGATTC  3795

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3796  ATTTTAAAAATAGCTCCTATATTTTGTAACATGTCTCAAACACTCATACTGGGTTCCACAATCCACTGTTAGAA  3869

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3870  TACCTATGGTTAGGGCTTCTGAACTAAAATAATGGAAAATTTTAACAATTTGTATAGTGCCTGGATCATTACTA  3943

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3944  GTGCCATAACCCTGCTTCTTCAACATTTCACAGAACTTCTCTTTTATATAAAGGCAAGAGCACAAAATGAGTTC  4017

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 4018  AGATGATCACAAACAGGTGAGTTTTGTTGGAGAAGAAAGTTGGAGTAGGAGACTTTCACAAGTGGTTTCCATGG  4091

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 4092  AGATAGAATGAAGCATTCTGTGGTCAAGTAAGTTTAGGGAGCTATTCATGTTTCACTTGCTTTGTGGAGATTCA  4165

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 4166  CACTATGCACTGGGAAAGTATCTGAAAAGTCTTATAATAAAGAAACAGGCTTAACTTTGTGTAAGAACACTGTT  4239

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 4240  TATCAATGTCATTTGGCTATAGAAACATTTTCTCCTGCTGATTGTGTGTGTGAAACATGTATTAACATTCCAAT  4313

Query 1261  ---------------------------------  1260
                                             
Sbjct 4314  GAACTAGCATTTAATAAAGCACAATTTTGGAAA  4346

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.