Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01615
Subject:
XR_001751973.1
Aligned Length:
1358
Identities:
858
Gaps:
473

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATCCCTCCCACAGTGGACCTAGGAAACCCTCAGCTCAGAGAACAACCCTGCATTCCCCACACAACACCCACAAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGCCACTGCGGGCGAGGAGGGCACGAGGCCAGGTTCCCAAGAGCTCAGCAGCTCTGGCCCCTAGTAGCAGCTC  148

Query    1  -------------------------------------------------------ATGGAGCTGATCCAGGACA  19
                                                                   |||||||||||||||||||
Sbjct  149  AGTTCCTCAATGGGCCGTGTTTGTCCTGGAGCCCAGATGGACTGTGGCCAGGAACATGGAGCTGATCCAGGACA  222

Query   20  TCTCTCGCCCGCCACTGGAGTACGTGAAGGGGGTCCCGCTCATCAAGTACTTTGCAGAGGCACTGGGGCCCCTG  93
            .|||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCTCCCGCCCGCCACTGGAGTACGTGAAGGGGGTCCCGCTCATCAAGTACTTTGCAGAGGCACTGGGGCCCCTG  296

Query   94  CAGAGCTTCCAGGCCCGGCCTGATGACCTGCTCATCAGCACCTACCCCAAGTCCGGCACCACCTGGGTGAGCCA  167
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||
Sbjct  297  CAGAGCTTCCAGGCCCGGCCTGATGACCTGCTCATCAGCACCTACCCCAAGTCCGGCACTACCTGGGTAAGCCA  370

Query  168  GATTCTGGACATGATCTACCAGGGCGGTGACCTGGAAAAGTGTCACCGAGCTCCCATCTTCATGCGGGTGCCCT  241
            ||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct  371  GATTCTGGACATGATCTACCAGGGTGGTGACCTGGAGAAGTGTCACCGAGCTCCCATCTTCATGCGGGTGCCCT  444

Query  242  TCCTTGAGTTCAAAGTCCCAGGGATTCCCTCAGGGATGGAGACTCTGAAAAACACACCAGCCCCACGACTCCTG  315
            |||||||||||||||.||||||||||||||||||||||||||||||||||.|||||||.|||||||||||||||
Sbjct  445  TCCTTGAGTTCAAAGCCCCAGGGATTCCCTCAGGGATGGAGACTCTGAAAGACACACCGGCCCCACGACTCCTG  518

Query  316  AAGACACACCTGCCCCTGGCTCTGCTCCCCCAGACTCTGTTGGATCAGAAGGTCAAGGTGGTCTATGTTGCCCG  389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAGACACACCTGCCCCTGGCTCTGCTCCCCCAGACTCTGTTGGATCAGAAGGTCAAGGTGGTCTATGTTGCCCG  592

Query  390  CAACGCAAAGGATGTGGCGGTTTCCTACTACCACTTCTACCACATGGCCAAAGTGTACCCTCACCCTGGGACCT  463
            ||||||||||||||||||.||||||||||||||||||||||||||||||||.|||.|||||.|.||||||||||
Sbjct  593  CAACGCAAAGGATGTGGCAGTTTCCTACTACCACTTCTACCACATGGCCAAGGTGCACCCTGAGCCTGGGACCT  666

Query  464  GGGAAAGCTTCCTGGAGAAGTTCATGGCTGGAGAAGTGTCCTATGGGTCCTGGTACCAGCACGTGCAAGAGTGG  537
            ||||.||||||||||||||||||||||..||||||||||||||.||.||||||||||||||||||||.||||||
Sbjct  667  GGGACAGCTTCCTGGAGAAGTTCATGGTCGGAGAAGTGTCCTACGGATCCTGGTACCAGCACGTGCAGGAGTGG  740

Query  538  TGGGAGCTGAGCCGCACCCACCCTGTTCTCTACCTCTTCTATGAAGACATGAAGG-------------------  592
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct  741  TGGGAGCTGAGCCGCACCCACCCTGTTCTCTACCTCTTCTATGAAGACATGAAGGAGTAATCCGAGCCTCCACT  814

Query  593  -------------------AGAACCCCAAAAGGGAGATTCAAAAGATCCTGGAGTTTGTGGGGCGCTCCCTGCC  647
                               |||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAGGGGCCCTCTGCTGCTCAGAACCCGAAAAGGGAGATTCAAAAGATCCTGGAGTTTGTGGGGCGCTCCCTGCC  888

Query  648  AGAGGAGACTGTGGACCTCATGGTTGAGCACACGTCGTTCAAGGAGATGAAGAAGAACCCTATGACCAACTACA  721
            |||||||||.||||||.||.|||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGAGGAGACCGTGGACTTCGTGGTTCAGCACACGTCGTTCAAGGAGATGAAGAAGAACCCTATGACCAACTACA  962

Query  722  CCACCGTCCGCCGGGAGTTCATGGACCACAGCATCTCCCCCTTCATGAGGAAAGGCATGGCTGGGGACTGGAAG  795
            |||||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCACCGTCCCCCAGGAGTTCATGGACCACAGCATCTCCCCCTTCATGAGGAAAGGCATGGCTGGGGACTGGAAG  1036

Query  796  ACCACCTTCACCGTGGCGCAGAATGAGCGCTTCGATGCGGACTATGCGGAGAAGATGGCAGGCTGCAGCCTCAG  869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACCACCTTCACCGTGGCGCAGAATGAGCGCTTCGATGCGGACTATGCGGAGAAGATGGCAGGCTGCAGCCTCAG  1110

Query  870  CTTCCGCTCTGAGCTG----------------------------------------------------------  885
            ||||||||||||||||                                                          
Sbjct 1111  CTTCCGCTCTGAGCTGTGAGAGGGGCTCCTGGAGTCACTGCAGAGGGAGTGTGCGAATCAAACCTGACCAAGCG  1184

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1185  GCTCAAGAATAAAATATGAATTGAGGGCCCGGGACGGTAGGTCATGTCTGTAATCCCAGCAATTTGGAGGCTGA  1258

Query  886  --------------------------------------------------------------------------  885
                                                                                      
Sbjct 1259  GGTGGGAGGATCATTTGAGCCCAGGAGTTCGAGACCAACCTGGGCAACATAGTGAGATTCTGTTAAAAAAATAA  1332

Query  886  --------------------------  885
                                      
Sbjct 1333  AATAAAATAAAACCAATTTTTAAAAA  1358

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.