Construct: ORF ccsbBroadEn_01615
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004038.1_s300c1, BRDN0000387677
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SULT1A2 (6799)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_177528.2 | 100% | 100% | |
| 2 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_001054.4 | 99.8% | 99.6% | 844A>G |
| 3 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_001055.3 | 96.9% | 95.9% | (many diffs) |
| 4 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177529.2 | 96.9% | 95.9% | (many diffs) |
| 5 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177530.2 | 96.9% | 95.9% | (many diffs) |
| 6 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177534.2 | 96.9% | 95.9% | (many diffs) |
| 7 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023611.2 | 96.9% | 95.9% | (many diffs) |
| 8 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023612.2 | 96.9% | 95.9% | (many diffs) |
| 9 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023613.2 | 96.9% | 95.9% | (many diffs) |
| 10 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450409.1 | 96.9% | 95.9% | (many diffs) |
| 11 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450410.1 | 96.9% | 95.9% | (many diffs) |
| 12 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450411.1 | 96.9% | 95.9% | (many diffs) |
| 13 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023604.1 | 95% | 94% | (many diffs) |
| 14 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023605.1 | 95% | 94% | (many diffs) |
| 15 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023608.1 | 95% | 94% | (many diffs) |
| 16 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023609.1 | 95% | 94% | (many diffs) |
| 17 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023610.1 | 95% | 94% | (many diffs) |
| 18 | human | 445329 | SULT1A4 | sulfotransferase family 1A ... | NM_001017390.2 | 93.5% | 90.5% | (many diffs) |
| 19 | human | 6818 | SULT1A3 | sulfotransferase family 1A ... | NM_177552.3 | 93.5% | 90.5% | (many diffs) |
| 20 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023607.2 | 74% | 73.3% | (many diffs) |
| 21 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450408.1 | 73.9% | 73.1% | (many diffs) |
| 22 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_001363863.1 | 71.5% | 66.7% | (many diffs) |
| 23 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177536.3 | 63.9% | 56.4% | (many diffs) |
| 24 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XR_001751973.1 | 63.1% | (many diffs) | |
| 25 | human | 100526831 | SLX1B-SULT1A4 | SLX1B-SULT1A4 readthrough (... | NR_037609.1 | 37.3% | (many diffs) | |
| 26 | human | 100526830 | SLX1A-SULT1A3 | SLX1A-SULT1A3 readthrough (... | NR_037608.1 | 37.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 954
- ORF length:
- 885
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGCTGATC CAGGACATCT CTCGCCCGCC ACTGGAGTAC GTGAAGGGGG 121 TCCCGCTCAT CAAGTACTTT GCAGAGGCAC TGGGGCCCCT GCAGAGCTTC CAGGCCCGGC 181 CTGATGACCT GCTCATCAGC ACCTACCCCA AGTCCGGCAC CACCTGGGTG AGCCAGATTC 241 TGGACATGAT CTACCAGGGC GGTGACCTGG AAAAGTGTCA CCGAGCTCCC ATCTTCATGC 301 GGGTGCCCTT CCTTGAGTTC AAAGTCCCAG GGATTCCCTC AGGGATGGAG ACTCTGAAAA 361 ACACACCAGC CCCACGACTC CTGAAGACAC ACCTGCCCCT GGCTCTGCTC CCCCAGACTC 421 TGTTGGATCA GAAGGTCAAG GTGGTCTATG TTGCCCGCAA CGCAAAGGAT GTGGCGGTTT 481 CCTACTACCA CTTCTACCAC ATGGCCAAAG TGTACCCTCA CCCTGGGACC TGGGAAAGCT 541 TCCTGGAGAA GTTCATGGCT GGAGAAGTGT CCTATGGGTC CTGGTACCAG CACGTGCAAG 601 AGTGGTGGGA GCTGAGCCGC ACCCACCCTG TTCTCTACCT CTTCTATGAA GACATGAAGG 661 AGAACCCCAA AAGGGAGATT CAAAAGATCC TGGAGTTTGT GGGGCGCTCC CTGCCAGAGG 721 AGACTGTGGA CCTCATGGTT GAGCACACGT CGTTCAAGGA GATGAAGAAG AACCCTATGA 781 CCAACTACAC CACCGTCCGC CGGGAGTTCA TGGACCACAG CATCTCCCCC TTCATGAGGA 841 AAGGCATGGC TGGGGACTGG AAGACCACCT TCACCGTGGC GCAGAATGAG CGCTTCGATG 901 CGGACTATGC GGAGAAGATG GCAGGCTGCA GCCTCAGCTT CCGCTCTGAG CTGTTGCCAA 961 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac