Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02816
Subject:
NR_135907.2
Aligned Length:
3343
Identities:
1174
Gaps:
2169

Alignment

Query    1  ----------------------------------------------------ATGGGCTGGATCACAGAAGATC  22
                                                                ||||||||||||||||||||||
Sbjct    1  GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGATCACAGAAGATC  74

Query   23  TTATTAGACGGAATGCTGAACACAACGACTGTGTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAA  96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TTATTAGACGGAATGCTGAACACAACGACTGTGTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAA  148

Query   97  ATAGAAAGACTAGAACACATTGATAAATGGTGCCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGG  170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATAGAAAGACTAGAACACATTGATAAATGGTGCCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGG  222

Query  171  GAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAG  244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAAAATTGAAAATGTTAGCAAACTCAAGAAACTTGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAG  296

Query  245  AAAACTTGGAAGGATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATT  318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AAAACTTGGAAGGATGTGAAGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATT  370

Query  319  AAAAACTTGCAGCACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTA  392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAAAACTTGCAGCACAATATCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTA  444

Query  393  TAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAAGTGGTTGGATGGTAAAGAAATAGAGCCTTCAGAAAGGA  466
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct  445  TAGGGAGTTCGTGGTAGCAACTCTTCCACAATTAAAG-------------------------------------  481

Query  467  TTAAGGCATTGCAGGACTATTCAGTAATTGAACCACAAATCAGAGAGCAGGAAAAAGATCACTGTCTTAAACGA  540
                                                                                      
Sbjct  482  --------------------------------------------------------------------------  481

Query  541  GCCAAACTCAAGGAAGAGGCTCAGAGGAAACACCAAGAAGAGGATAAAAATGAAGACAAGAGAAGTAACGCAGG  614
                                                                                      
Sbjct  482  --------------------------------------------------------------------------  481

Query  615  CTTTGATGGACGTTGGTACACAGACATCAATGCTACTCTTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCAC  688
                                                   |||||||||||||||||||||||||||||||||||
Sbjct  482  ---------------------------------------TTCCTCTTTAGAGAGCAAAGACCACCTACAGGCAC  516

Query  689  CAGACACAGAGGAACACAACACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGT  762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  517  CAGACACAGAGGAACACAACACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGT  590

Query  763  TTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAG  836
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591  TTGTTTACTCCTGAATCAAGATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAG  664

Query  837  TGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGC  910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  TGAAAAAAAGAAGAAAGTGAAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGC  738

Query  911  CCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGAT  984
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  739  CCAAAATTGACTTCTCTTTGAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGAT  812

Query  985  ACCTCTTTAATCGATGTTGATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGT  1058
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813  ACCTCTTTAATCGATGTTGATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGT  886

Query 1059  CCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCA  1132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  887  CCTTCCTGCAGAAGTGAAACCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCA  960

Query 1133  TGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGC  1206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  961  TGCCCAAGGTAGGAGAAGTAATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGC  1034

Query 1207  AGAGAACAAACAAATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGA  1280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035  AGAGAACAAACAAATACAAGAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGA  1108

Query 1281  TGTGACTAACATAGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGG  1354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109  TGTGACTAACATAGTTCAAGAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGG  1182

Query 1355  AAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTCCGCTGATT------------------------------  1398
            ||||||||||||||||||||||||||||||||||||||||||||                              
Sbjct 1183  AAGACCCAACCTTTGAAGACAACCCTGAAGTGCCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTG  1256

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1257  AGACCCACCAGGTCCAGTTTTGGTTGGTGTAGAGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATT  1330

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1331  TGTCAATATCGCTGCTCCAGTGTTTTAACTCTTACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAA  1404

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1405  TGTATGTCTTAAATGCTATAACTCATCATTTACCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCA  1478

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1479  TAGAACTATTGCATAAAACACTGATTATAAATACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGAC  1552

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1553  TGAGTATTAAATTGGTACTTCAGCAAAGTGGTCAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAA  1626

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1627  TACTTTAATATGATTTTAAACAGCATTTCCATTTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTA  1700

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1701  TAATGGCAAGAATATGAGTTTTGAAACCAGACACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCT  1774

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1775  TCAGCAAGTCCTTTAATTCTCTGAGCCTTAGTGGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAG  1848

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1849  GTTTGTCTCAAGATAAACTGCAGAAAGCACTTAGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTC  1922

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1923  CTTCTTCCCTTTCTCCTCTCTCTTCTCCTCCCTTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCC  1996

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1997  TCCCCAATTACTTTTCTCCCCTTATTCTTTTTCTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTT  2070

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2071  CCTTCTTTACTTTTTTAATATCCTACCTCTTCTTTATCTAGAACATTATGAATTCAATATTTCACATACATTGT  2144

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2145  AGGACAAATTACTGTTACTCTGATCATGATATAGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAA  2218

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2219  TACTTATTGAGCAACTATTGAGTGCTAGCCCCCTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAA  2292

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2293  TACATACACACAGACTATGTCAGGTGGTGTTCAGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGAT  2366

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2367  GGGTGCTTTTTCAGACAGGGCCTTTCTCTATTAAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGAT  2440

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2441  AACCAAAATGCATCAGTTAGAAAAAAATATGATGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAA  2514

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2515  TGTGGGAAGAGCTGGGTAGTGAAGCTCTAGAAGGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTA  2588

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2589  GACAATTCAGAACTTGCACAGAATCTGAGAAGCTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATG  2662

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2663  GAAATTATCATGCTGCTGAAATTGTTGCCTCTATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTG  2736

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2737  GGTGGGCTTGGAGCCAGCCTTCGTCAGCAGGCCTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATC  2810

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2811  AAGGATCAGCTGCAGCAGGCTGGGTCCCTCTGCATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAA  2884

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2885  CACCTTTCTTCATGGTCAACTCTACCCAGGAACCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTA  2958

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2959  GCCAACTTGACATATCATAATCCAACAGAACTCAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACT  3032

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3033  GTATTTAATTTCCACATAGAGAGAAAGCAAAATTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAA  3106

Query 1399  -------------  1398
                         
Sbjct 3107  CAAAACTGTGCCA  3119

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