Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03831
- Subject:
- XR_001783737.1
- Aligned Length:
- 4165
- Identities:
- 2000
- Gaps:
- 1899
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCAATAACACCTTCCAGGGAGAGGGCGGGCTCGGTTAGGGGCGGGGTCAAGAGCCCGCTCGGGTGACTGGCAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTAGCAAGTATCGCGGGAACATGGCAGGGGGAAACGCTCGCAGCGCTTAGAAATCACTATGGTGACGGAAAGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGGAGGCTATTTGGTAACTAGTTCGAGCTCTGAGAGCAGTCGCCACCGCTTTCCTGGAACTTGAGTGAATACA 222
Query 1 -------------------------------------ATGAGACTAAAGATATCTCTTTTAAAAGAACCAAAGC 37
||||||||.|||||||||||.|.|||.||||||||||
Sbjct 223 ATCAAGCGGTATTTAACATTTCTCTGGAACTGGAGACATGAGACTGAAGATATCTCTCTCAAAGGAACCAAAGC 296
Query 38 ATCAAGAATTAGTAAGCTGTGTGGGCTGGACTACTGCTGAAGAGCTGTATTCATGTAGTGATGATCACCAGATA 111
|||||||||||||.|||||||||||.||||||||.||.||.||||||||.|||||.|||||.||.||||||||.
Sbjct 297 ATCAAGAATTAGTGAGCTGTGTGGGTTGGACTACGGCGGAGGAGCTGTACTCATGCAGTGACGACCACCAGATC 370
Query 112 GTGAAGTGGAACTTGTTAACCAGTGAAACAACTCAAATAGTAAAGCTTCCTGATGATATTTACCCTATTGATTT 185
||.|||||||||.||.|||||||||||||.|..|.||||||.|||||.||||||||.||.|||||.||.||..|
Sbjct 371 GTCAAGTGGAACCTGCTAACCAGTGAAACCAGCCTAATAGTCAAGCTGCCTGATGACATCTACCCGATAGACCT 444
Query 186 TCACTGGTTTCCAAAAAGTTTGGGTGTAAAGAAACAAACCCAGGCAGAAAGCTTTGTCCTCACAAGTTCTGATG 259
|||||||||||||||.|||||.||..||||||||||.||.||||||||||||||.|||||||||||.|||||||
Sbjct 445 TCACTGGTTTCCAAAGAGTTTAGGCATAAAGAAACAGACGCAGGCAGAAAGCTTCGTCCTCACAAGCTCTGATG 518
Query 260 GTAAATTTCATCTGATTTCCAAGTTAGGAAGAGTGGAAAAAAGTGTAGAAGCTCACTGTGGAGCAGTACTTGCA 333
||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||.||.||.|||
Sbjct 519 GTAAGTTTCATCTGATTTCCAAGTTAGGAAGAGTGGAAAAGAGTGTAGAAGCTCACTGTGGGGCTGTGCTCGCA 592
Query 334 GGAAGATGGAATTATGAAGGAACAGCATTAGTTACAGTTGGAGAAGATGGACAAATAAAAATTTGGTCAAAGAC 407
|||.|||||||||||||.||.||.||||||||.|||||||||||||||||||||.|.|||||.|||||||||||
Sbjct 593 GGACGATGGAATTATGAGGGGACTGCATTAGTGACAGTTGGAGAAGATGGACAAGTGAAAATCTGGTCAAAGAC 666
Query 408 TGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAA 481
.||||||||.||||||||||||||.||||||||||||||||||||.||||||||.|||||||||||||||||||
Sbjct 667 AGGGATGCTCAGATCAACTTTAGCCCAGCAAGGAACACCAGTGTACTCAGTAGCCTGGGGCCCTGATTCAGAAA 740
Query 482 AGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAA 555
||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 741 AGGTTCTTTATACAGCAGGCAAACAGCTCATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTACAGTGGAAA 814
Query 556 GCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTG 629
||.|||||||||||.|||||||||||.||.||||||||.||.|||||.||||||||||||||.|||||||||||
Sbjct 815 GCCCATGATGGCATCATTTTAAAAGTCGACTGGAACTCAGTGAATGACCTTATTTTATCTGCGGGTGAAGACTG 888
Query 630 TAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAG 703
|||.||||||||.|||||||||||.||||||...||||||...||.||.|||||||||||.|||||.||.||||
Sbjct 889 TAAGTATAAGGTTTGGGATAGTTATGGCCGCGTGCTGTACGGCTCCCAGCCTCATGAGCACCCCATCACCTCAG 962
Query 704 TTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGG 777
|.|||||||||||||||||.||.||||||||.|||||||||||||||||.||||||||||||||||||||||||
Sbjct 963 TGGCCTGGGCTCCAGATGGGGAGTTATTTGCCGTTGGATCGTTTCATACGTTACGCTTGTGTGATAAAACTGGG 1036
Query 778 TGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGAT 851
|||||||||||.|||||.||||||||||||||||||||||||||.|||||.||||||||.||||||||||||||
Sbjct 1037 TGGTCATATGCTTTAGAGAAACCCAACACTGGCAGCATATTTAACATTGCGTGGTCTATTGATGGCACTCAGAT 1110
Query 852 TGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTC 925
.||.|||||||||||.||.||.|||||.||.|||||||||||||||||.||.|..|||||||||||||||||||
Sbjct 1111 CGCGGGAGCCTGTGGGAACGGGCATGTTGTCTTTGCACATGTGGTGGAGCAGCGCTGGGAGTGGAAAAATTTTC 1184
Query 926 AAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTC 999
|||||||..|||||||.|||||..|||||||||||||.||.|||||.||||||||.||||||.|.|||||.|||
Sbjct 1185 AAGTAACGCTAACGAAGAGAAGGACCATGCAGGTTCGCAACGTTCTCAATGATGCCGTGGATCTCCTGGAGTTC 1258
Query 1000 CGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTT 1073
||.||.|||||||||||||||||.||.|||.|.||||||||.||.||.||.|||||.||.||.||.||||||||
Sbjct 1259 CGGGACAGAGTCATTAAAGCATCCTTAAACCACGCACACTTGGTGGTCTCCACGTCCCTGCAGTGCTACGTGTT 1332
Query 1074 CTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAG 1147
|||.||||||||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1333 CTCTACGAAGAACTGGAATACACCACTTATATTTGATCTCAAAGAAGGAACTGTTAGTTTAATTCTGCAGGCAG 1406
Query 1148 AAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCA 1221
||||||||||||||||.||.|||||..|..|||||||..|..|.||.||||||||||||||.|||||.||||||
Sbjct 1407 AAAGACATTTTCTTCTGGTGGATGGCGGGGGTATCTACCTGCACTCTTATGAAGGGCGCTTCATTTCTTCTCCA 1480
Query 1222 AAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAG 1295
||.||||||||.|||||||||||.||.|||||.||.||||||||||||.||||.|||||.||.||||||||||.
Sbjct 1481 AAGTTTCCTGGCATGAGAACAGACATCCTGAACGCTCAGACTGTGTCTCTGAGCAATGACACGATAGCAATAAA 1554
Query 1296 AGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTC 1369
.|||||||||||.||.||.|
Sbjct 1555 GGACAAAGCTGACGAGAAGA------------------------------------------------------ 1574
Query 1370 TTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTC 1443
||||||||||..|||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1575 -----------AATGAAATCTCAGAAATTGCTCTGGATCAAAAAGGACTTACCAATGACAGAAAAATTGCTTTC 1637
Query 1444 ATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGG 1517
|||||.||.||.||||||||||..|||||.||||||||||||||||||||.||||||||.|||||.||.|||||
Sbjct 1638 ATTGACAAGAACAGAGATCTCTACATCACCTCTGTGAAACGATTTGGGAAAGAAGAACAGATTATTAAACTTGG 1711
Query 1518 AACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAG 1591
|||.|||||.|||||||||||||||...|||||||||||||||||.||||||.||||||||||||||||.|.||
Sbjct 1712 AACCATGGTACATACTTTGGCATGGTGTGATACATGCAATATCCTCTGTGGAATTCAAGATACTCGATTCACAG 1785
Query 1592 TGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGT 1665
|.|||||||||||.|||||..||||||||||||||||||||.|||||||||||||.||.|||||.|||||||||
Sbjct 1786 TATGGTATTACCCTAATACCATTTATGTGGACAGAGACATTCTGCCTAAAACATTGTACGAAAGAGATGCAAGT 1859
Query 1666 GAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCT 1739
||||.|||||||||.||.|||||.||||||||||||||||||||.||||||||.||||||||||||||||||||
Sbjct 1860 GAATATAGTAAAAACCCGCATATAGTGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCTCCCT 1933
Query 1740 GGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTG 1813
|||.||||||||||||.||||.||.||.||.||.||||||||.|||||.|||||.||.||.||||||||.||||
Sbjct 1934 GGTGCACATCAGCATATCACCGTACCCCGCCATCCTCCATGAGTATGTGAGCAGCTCCAAGTGGGAAGAGGCTG 2007
Query 1814 TGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGAT 1887
|.||.|||||.|||||||||||||||||||.||||||||||||.|||||.||||||||.|||||||||||||||
Sbjct 2008 TAAGGCTTTGCCGCTTTGTTAAGGAGCAAAGCATGTGGGCTTGCCTAGCGGCTATGGCTGTTGCTAATCGAGAT 2081
Query 1888 ATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAA 1961
|||...||||||||||||||||||||||||.||||.|||||||||||.||||.||||||||||.||||||||.|
Sbjct 2082 ATGGTCACTGCAGAAATAGCCTATGCAGCAGTTGGGGAAATTGATAAAGTTCGGTACATCAATGCTATAAAAGA 2155
Query 1962 TCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTAC 2035
|||||||||||.|||.||||||||||||||||||||..||||||||||||||||.|||||||||||||.|||.|
Sbjct 2156 TCTTCCATCTAGAGAGTCAAAAATGGCCCACATACTCATGTTTAGTGGGAACATCCAGGAGGCTGAAACAGTCC 2229
Query 2036 TTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAA 2109
|.||.|||||||||||||||||||||||.||.||||||||.|||||||||||.||||||||||||||.|||||.
Sbjct 2230 TGCTCCAGGCTGGCCTTGTTTATCAAGCCATACAGATCAACATTAATCTCTATAACTGGGAAAGGGCGCTGGAG 2303
Query 2110 TTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAA 2183
||||||||||||||||||||.||.|||||||||||.||.|||||.|||||.|||||.|||||.|||||||||||
Sbjct 2304 TTGGCTGTAAAATACAAAACCCACGTTGATACAGTGCTCGCTTATCGTCAGAAGTTCTTGGACACATTTGGTAA 2377
Query 2184 ACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAA 2257
|||||||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||||
Sbjct 2378 ACAGGAAACTAATAAACGATATTTACAATATGCAGAGGGCCTCCAAATAGACTGGGAGAAAATCAAAGCCAAAA 2451
Query 2258 TTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCC 2331
||||||||||||||||.||||||.||||.|.||||||.|||.||||.||||||||||||.|.||.|||||||.|
Sbjct 2452 TTGAGATGGAAATTACTAAAGAACGAGACCGATCATCCAGCGGCCAGTCCAGCAAGAGTGTGGGCTTAAAGCAC 2525
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 2526 TAAGGGCCACGCTTACCTCCAAACTAGTTTGGACTAACCAAAGATGTGCATGTTTGTTTGCTTTAAGAAGAAAA 2599
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 2600 AAAAGCATAATTTTAAGACTAGTGCTTCCTCTAGATGGTAGTGCACTTGCCTAGCATACATGAGGCCCTGGGGC 2673
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 2674 TCATCCCCAGTCAAAAGAAAAAGGCATTGTCTTTGAATAAGTGTATGAGTTTTCTGTGTTTTTAATACTTAAGG 2747
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 2748 TACGTTCAGAAAGGTTAAGCCCAAAATACCTTATATAATTCCATCATTTCTATTTTTCTAGTCTAATAATTAAG 2821
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 2822 AAAATATTTCTATATGCTTATCTATGCCCAAGGAGTGTTGAGTACATTCCAGTTTGTTTGTTTGTTTGTTCCTT 2895
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 2896 TATTTCTGTTTTTTTCAGTATAAATAGGTATTCTTATAATAAAGCCTTGAGTTATTTACAATGTATGTTATTCT 2969
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 2970 GATTGTATGTATTCTATTTGATATATAAATTGTAAAGTATCTTCCATACTTTATGAAACAAAAATACAGGAGAA 3043
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3044 AGGGTTTGGGGAAAATGGTACAATGTAGATGTATATCGAAGTTTATAGTTCACATAACAAACGCTGGGAACAGC 3117
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3118 TATGGTATCCATCAGCTACAATTAGATAAAACCACGTGGTATTCACCGGCAGTGATTAGTCTCTCATAGAAGGG 3191
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3192 TTGAGCTGTGGCACATGCCGCAACGTGGATGAGCCTAGGAGAACTTCCACTACGTGAAGTAGGTTAGACATGGC 3265
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3266 ACAGACGTCAGTCCTGCGGGGCTCACACAAGGCACTCGGATTAAGTAAGTTCTTCTGGTCAGAAAAGAGGCAAG 3339
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3340 AGGGACAGGCCCTGGAGGAGGGAATTCATTGTGTAACGCTGGCCATTGCTGCTTGGGGTGAGAGCCCTAGAAAT 3413
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3414 GGAGAGTGGTGATGGTTGTATAGCATCGTGGGTGTTGTGAACTCCGTTGTCCTCTTTAAAAGGATTAAAATGAT 3487
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3488 AAATTTTCTTTCCAGTTGTTTTTTTTTTTAAACCATATTGAAAAAGTAGTCAAACTGCTTTTGTTGTTGTTGTT 3561
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3562 ACTCTATTGACAAAGTTGGTAAACTGCATTTTCTTCATTCTTCCCTGACTTCAGAATATTTGGGCCTCAGACTT 3635
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3636 AGAGTCTAAATTTTCAAAACTCTCCTCACTGGATGACCCTGTTTGTCTGGCTTTAATATAATGCATCCCCAAGT 3709
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3710 CCCCAAAAGCTTTTTAACAGTGACACAGACATCCCTCTAAAGTGCCCTTGACCCTGCTCTTAGAATTGGTGCAT 3783
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3784 TACAGAGCTCATGCACACTAATTGGGAAAAACATCACCCCTTTCCCTCCACTGTAATTTCTCATGTAGGTTTTG 3857
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3858 TTCATAGAAATGCCCCATAGTTCCCAATATGTACCTTTTCTTTTATGAAATGTTGGACTGTTCAATTCTTAGTC 3931
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 3932 TAGAGTTTGGATACACAGATATGTTCAATTCATGAAATCTAAGCAATTGACTTATATGTTATACATGCTTTCTA 4005
Query 2332 -------------------------------------------------------------------------- 2331
Sbjct 4006 CTTTGTTAAATTTCAGTGTAATGTTTCAAAAGAAAAAAATGGTTAAATTTTATGTTTAGTATGTTTACCACAAT 4079
Query 2332 --------------------- 2331
Sbjct 4080 AAAAAGGTTAAAAAAAAATAA 4100
