Construct: ORF ccsbBroadEn_03831

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014281.1_s300c1, BRDN0000387762
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IFT80 (57560)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57560 IFT80 intraflagellar transport 80 NM_020800.3 100% 100%
2 human 57560 IFT80 intraflagellar transport 80 NM_001190241.2 82.3% 82.3% 0_1ins411
3 human 57560 IFT80 intraflagellar transport 80 NM_001190242.1 82.3% 82.3% 0_1ins411
4 human 100174949 TRIM59-IFT80 TRIM59-IFT80 protein NR_148401.1 63% (many diffs)
5 human 100174949 TRIM59-IFT80 TRIM59-IFT80 protein NR_148402.1 37.9% (many diffs)
6 human 100174949 TRIM59-IFT80 TRIM59-IFT80 protein NR_148403.1 36.3% (many diffs)
7 mouse 68259 Ift80 intraflagellar transport 80 NM_026641.2 88.2% 94.5% (many diffs)
8 mouse 68259 Ift80 intraflagellar transport 80 XM_006501966.3 88.2% 94.5% (many diffs)
9 mouse 68259 Ift80 intraflagellar transport 80 XM_017319702.1 85.1% 91.5% (many diffs)
10 mouse 68259 Ift80 intraflagellar transport 80 XM_006501967.3 81.3% 87.1% (many diffs)
11 mouse 68259 Ift80 intraflagellar transport 80 XR_001783737.1 48% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2400
ORF length:
2331
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg TACAAAAAAG
61TTGGCACCAT GAGACTAAAG ATATCTCTTT TAAAAGAACC AAAGCATCAA GAATTAGTAA
121GCTGTGTGGG CTGGACTACT GCTGAAGAGC TGTATTCATG TAGTGATGAT CACCAGATAG
181TGAAGTGGAA CTTGTTAACC AGTGAAACAA CTCAAATAGT AAAGCTTCCT GATGATATTT
241ACCCTATTGA TTTTCACTGG TTTCCAAAAA GTTTGGGTGT AAAGAAACAA ACCCAGGCAG
301AAAGCTTTGT CCTCACAAGT TCTGATGGTA AATTTCATCT GATTTCCAAG TTAGGAAGAG
361TGGAAAAAAG TGTAGAAGCT CACTGTGGAG CAGTACTTGC AGGAAGATGG AATTATGAAG
421GAACAGCATT AGTTACAGTT GGAGAAGATG GACAAATAAA AATTTGGTCA AAGACTGGGA
481TGCTTAGATC AACTTTAGCT CAGCAAGGAA CACCAGTGTA TTCAGTAGCG TGGGGCCCTG
541ATTCAGAAAA GGTTCTTTAT ACAGCAGGCA AGCAGCTAAT CATTAAACCT CTTCAACCAA
601ATGCTAAAGT TTTGCAGTGG AAAGCTCATG ATGGCATTAT TTTAAAAGTA GATTGGAACT
661CGGTCAATGA TCTTATTTTA TCTGCTGGTG AAGACTGTAA ATATAAGGTA TGGGATAGTT
721ACGGCCGCCC ACTGTACAAT TCACAACCTC ATGAGCATCC CATTACTTCA GTTGCCTGGG
781CTCCAGATGG AGAATTATTT GCTGTTGGAT CGTTTCATAC TTTACGCTTG TGTGATAAAA
841CTGGGTGGTC ATATGCATTA GAAAAACCCA ACACTGGCAG CATATTTAAT ATTGCATGGT
901CTATCGATGG CACTCAGATT GCTGGAGCCT GTGGAAATGG ACATGTCGTT TTTGCACATG
961TGGTGGAACA ACATTGGGAG TGGAAAAATT TTCAAGTAAC ATTAACGAAA AGAAGAGCCA
1021TGCAGGTTCG TAATGTTCTT AATGATGCAG TGGATTTACT GGAATTCCGT GATAGAGTCA
1081TTAAAGCATC TTTGAACTAT GCACACTTAG TTGTTTCAAC GTCTCTTCAA TGTTACGTGT
1141TCTCCACGAA GAACTGGAAC ACACCAATTA TATTTGATCT CAAAGAAGGA ACTGTTAGTT
1201TGATTCTGCA GGCAGAAAGA CATTTTCTTC TTGTAGATGG TAGTAGTATC TATTTATATT
1261CATATGAAGG GCGCTTTATT TCATCTCCAA AATTTCCTGG AATGAGAACA GATATTCTGA
1321ATGCACAGAC TGTGTCTTTG AGTAATGATA CCATAGCAAT AAGAGACAAA GCTGATGAAA
1381AAATAATCTT CCTCTTTGAG GCATCAACCG GAAAGCCGTT AGGTGATGGA AAGTTTCTTT
1441CTCATAAGAA TGAAATCTTG GAAATTGCTC TGGATCAAAA AGGACTTACC AATGATAGAA
1501AAATTGCTTT CATTGATAAA AATAGAGATC TCTGTATCAC TTCTGTGAAA CGATTTGGGA
1561AGGAAGAACA AATTATCAAG CTTGGAACAA TGGTGCATAC TTTGGCATGG AACGATACAT
1621GCAATATCCT TTGTGGACTT CAAGATACTC GATTTATAGT GTGGTATTAC CCCAATACAG
1681TTTATGTGGA CAGAGACATT TTGCCTAAAA CATTATATGA AAGGGATGCA AGTGAATTTA
1741GTAAAAATCC CCATATTGTG AGTTTTGTTG GAAATCAAGT AACTATTAGA AGAGCTGATG
1801GCTCCCTGGT TCACATCAGC ATAACACCAT ATCCTGCTAT TCTCCATGAA TATGTAAGCA
1861GTTCAAAATG GGAAGATGCT GTGAGACTTT GTCGCTTTGT TAAGGAGCAA ACCATGTGGG
1921CTTGTCTAGC TGCTATGGCA GTTGCTAATC GAGATATGAC TACTGCAGAA ATAGCCTATG
1981CAGCAATTGG TGAAATTGAT AAGGTTCAGT ACATCAATTC TATAAAAAAT CTTCCATCTA
2041AAGAATCAAA AATGGCCCAC ATACTACTGT TTAGTGGGAA CATACAGGAG GCTGAAATAG
2101TACTTCTTCA GGCTGGCCTT GTTTATCAAG CAATCCAGAT CAATATTAAT CTCTACAACT
2161GGGAAAGGGC ACTGGAATTG GCTGTAAAAT ACAAAACACA TGTTGATACA GTTCTTGCTT
2221ACCGTCAAAA GTTTTTGGAG ACATTTGGTA AACAGGAAAC TAATAAACGA TACTTGCATT
2281ATGCAGAAGG TCTCCAAATA GATTGGGAGA AAATCAAAGC CAAAATTGAG ATGGAAATTA
2341CAAAAGAAAG AGAGCAATCA TCAAGCAGCC AATCCAGCAA GAGTATAGGT TTAAAGCCCT
2401TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
2461acgaac

Download FASTA (ORF) (Full)