Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04397
- Subject:
- XR_931924.1
- Aligned Length:
- 3308
- Identities:
- 549
- Gaps:
- 2759
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGCCAAGCTAGGGCACTCTGGTGTACAGCCAGTCCCCGCCGCGGAGGTGCCGGTGGAGCCTGGGACCGGGCGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCTCCGCCCCGCTTTTGCAGCTAGGGGTGTGTTTCAGGGGGGATTGGGGCAAGCCAAGCAGGCGAGGACCCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCTGTGCCGCTTTGCCTACCCCTCATCCCTCGGCACCAAGGCTACTTGAGCCCCAGGGTGTTTTTTCCTTGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCGCCACCTCCTGGTCCCTGGCCCAACATGATACTGACCAAAGCTCAGTACGACGAGATAGCCCAGTGCCTAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTCTGTGCCGCCTACCAGGCAGAGCCTGAGGAAGCTGAAGCAGAGGTTTCCCAGTCAATCGCAGGCCACTCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGAGCATCTTCTCCCAGGAGTACCAGAAACACATTAAAAGAACACATGCCAAACATCATACTTCGGAAGCAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAAAGTTATTACCAGAGGTACCTGAATGGAGTGGTGAAAAATGGAGCTGCCCCAGTGCTCCTGGACCTGGCCA 518
Query 1 --------------------------ATGGCTCGGCTTATACTGGAGAGGTTTCTACAGGAACACGAGGAAACT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATGAGGTGGACTATGCGCCCTCATTAATGGCTCGGCTTATACTGGAGAGGTTTCTACAGGAACACGAGGAAACT 592
Query 49 CCACCCTCCAAGTCTATTATAAATAGTATGCTACGGGACCCTTCTCAGATTCCAGATGGAGTTCTAGCAAATCA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCACCCTCCAAGTCTATTATAAATAGTATGCTACGGGACCCTTCTCAGATTCCAGATGGAGTTCTAGCAAATCA 666
Query 123 GGTCTATCAGTGCATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCATCAAGC--------------- 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGTCTATCAGTGCATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCATCAAGCACTTATACTCACCAA 740
Query 182 -------------------------------------------------------------------------- 181
Sbjct 741 GGAAAAAATGTGAGAAACCAGCCACCTCAACTTTCCAAAGTGTGACTCCAGGACACAGCTATTAGACAAAAGCA 814
Query 182 -------------------------------------------------------------------------- 181
Sbjct 815 TAAACTATGAAGCAAGGAAAGGTAATGATGCAGGAAGCTTCAAATGCTGTGGGTTTCATTTCTGTACCATCAGA 888
Query 182 -------------------------------------------------------------------------- 181
Sbjct 889 GACCTCAGTTTCATGATTCAACATTTTAGATGTAAATAATTTACAACAATAAAAATGAGAGCACATTTATGTGG 962
Query 182 -------------------------------------------------------------------------- 181
Sbjct 963 AATAGAAGTAAATAATTTAGTTCTAAAGTGTGGGATGCCCCTAGTAATGAGAGACCATTGAGAGTTATTCATCA 1036
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1037 AATGTCTTCAATGGACTCTGAAAATTTGTGAAATTTTGTGATTTAAAAATGTGTTCCTTTATTTTGTTTCTCTT 1110
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1111 TAGAAATTTAAAAAGCACAGCCATGTGCCTTGGAAGGCAAGGGACAACTGGAGGAAAAGGCAATAATGATGACT 1184
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1185 TAGGGCATGTTTTGCTGGAACATAAATGGCCACATCTCTTGAATTCTAAGATTTAAACCATATTCACCTGTATG 1258
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1259 TATTGGTAAAATGCAAGATAATTCTCTAGGAATTTTTTTTTTAATAAATAACGAAGTTTTATTTAAGTTGAACT 1332
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1333 CGTGCAGTGCATGATCAGAATCAGCTTCTCTGGTAAGCCAAGGAGTGACGTGACCAGGTTGACGTTATCAGTGA 1406
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1407 AAAGGACAATGAAGTGGCAAAAGTTCAACAACAGTCGACTGGAAGTGAAACAAAGAAGTTTCTAAATGTTGGCC 1480
Query 182 -------------------------------------------------------------------------- 181
Sbjct 1481 TGATGACAAATGTGAATTCACAGAAGATTTACAGAATTCTCTAAGATTAGGAATTCTTCTAGGGCAAAGACTGC 1554
Query 182 --ATGCCATTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGATG 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTATGCCATTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGATG 1628
Query 254 AAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGACTTCATTTTACAAGTACCAGTTGCTGTAGAAGGG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGACTTCATTTTACAAGTACCAGTTGCTGTAGAAGGG 1702
Query 328 CACATAATTCACTGGATTGAAAGCAAAGCCTCATTTGGTGATGAATGTAGCCACCACGCCTACCTGCATGACCA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CACATAATTCACTGGATTGAAAGCAAAGCCTCATTTGGTGATGAATGTAGCCACCACGCCTACCTGCATGACCA 1776
Query 402 GTTCTGGAGCTACTGGAATAGATTTGGGCCAGGCTTAGTCATCTATTGGTATGGATTTATCCAGGAGCTGGACT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GTTCTGGAGCTACTGGAATAGATTTGGGCCAGGCTTAGTCATCTATTGGTATGGATTTATCCAGGAGCTGGACT 1850
Query 476 GCAACCGGGAAAGGGGCATCCTGCTCAAAGCCTGTTTCCCCACGAACATTGTCACCTTATGCCACAGCATAGCT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GCAACCGGGAAAGGGGCATCCTGCTCAAAGCCTGTTTCCCCACGAACATTGTCACCTTATGCCACAGCATAGCT 1924
Query 550 -------------------------------------------------------------------------- 549
Sbjct 1925 TGACCCTGAAGATCCTGGAAGAGAAGCTGGGAGGAAAAGAGACCCAGCATTGCATTACCATCGTGGAATAATCT 1998
Query 550 -------------------------------------------------------------------------- 549
Sbjct 1999 AGCGCAAACCTAGGAAAGCTGAAGCCACAAAGTCCAAAGCCACCTTTGTACTCACCTGCAGAGCTCCAGAAGAC 2072
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2073 CTTGATGGCAGCCTGCCTATGCTGTGTGTTTGCTATATTCAATCTTTACGGCTTCCTGACTTCTGTGACAGTAA 2146
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2147 GCCAAGTGCAAAAATACACTTGATGAGAATTTCCTCTTTTAATAATGTTATTTGAACACCACATATTTTAGATT 2220
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2221 TATCTTATTTGAAAGTATTAGTTCCATTGTGCCTGGAAACCACACTCCTTTAGATTGGGGGCCGAGAGGCGACA 2294
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2295 ACCCAACATTGAGGAGAGTTTATTTTTAAACATGGCTAGTTGTCAGTATGTACGTGAGCTAGTATTTTTATGAG 2368
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2369 TCGAGTTTTTTAAAGGCACATTCTGTATACTGCTTAGTATATGCATTTTATACCATGTAATTATAAAACACTCG 2442
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2443 AGTAAGTTCAGCATTAGAAATGTTTAGCTTTGTATGAACTGAGTGTGCCAGAAATAAACCTGGAGCAATTTTTA 2516
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2517 AATAAGCAAAATAAAGGAGATTTTTCTATTTGTTCACTTTAATTTATTCACTTTTGTGTACTTTTATGTACTGC 2590
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2591 AAATCAGATTTCAGTCTAAAGCGAAACATCAGTAAGTTAATAATAAACCTATCTTTTGGGAAGTTGAATATTAA 2664
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2665 TCTGTACCCAAAACGTATTTAGTAAAATATTTGCCCCCGCCACCCTGCCATGCTGACATAACAACTTTTATAAT 2738
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2739 GTTGAATAGATGATATGGGAAATACTAATAACAACAATGTAATTTTTGCAGACAGCTTTAACTTATATACATTG 2812
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2813 CTTGATTTTTTTCAAAAGACTAAATATGTCATTTATACTTTGTTTATTTTCTACCAAAGAAGGTTTGTAAAAAT 2886
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2887 ATGCCTGCTGCTTTTCCTTTTGAAGGACACAAACCTGGTCCCAACATGTGTGGATTTTAACTCTGAGTGGGGTG 2960
Query 550 -------------------------------------------------------------------------- 549
Sbjct 2961 CATTAAATCAAAAGAGAGAGGCAGAAGATGAAATGCTAAAGAAGGGTCAGGCAAACTTCTGTTTCAGTATAAAA 3034
Query 550 -------------------------------------------------------------------------- 549
Sbjct 3035 TTCATCATGCAGGCTTCTGAGTGAAATAGAATGATTTGAAACCACTACTGTATTGCCTGGATACACACACACAC 3108
Query 550 -------------------------------------------------------------------------- 549
Sbjct 3109 ACACACACACACTTTATACAAAAATGTTAAAAGCAGGTTTCCTGGCATGTTCTAAACTGTTTTTTCTTTAGGAA 3182
Query 550 -------------------------------------------------------------------------- 549
Sbjct 3183 TAAATTACATTTATCTGCACAGATGTTGAAAATCCTGTTAAACCCTTGTCAAGGATTTGTTTATTTTACATTAA 3256
Query 550 ---------------------------------------------------- 549
Sbjct 3257 ACAAATTTATTATGATGAACGTGAACAAATAAATTAAAAAATAAAAAAGGTA 3308
