Construct: ORF ccsbBroadEn_04397
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014040.1_s300c1, BRDN0000393064
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C15orf41 (84529)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001290232.2 | 100% | 100% | |
| 2 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001321756.2 | 100% | 100% | |
| 3 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_032499.6 | 100% | 100% | |
| 4 | human | 84529 | C15orf41 | chromosome 15 open reading ... | XM_024450088.1 | 100% | 100% | |
| 5 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001321757.2 | 86.3% | 86.3% | 0_1ins75 |
| 6 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001321758.2 | 75% | 75% | 1_183del |
| 7 | human | 84529 | C15orf41 | chromosome 15 open reading ... | XM_017022676.1 | 65.8% | 41.2% | (many diffs) |
| 8 | human | 84529 | C15orf41 | chromosome 15 open reading ... | XM_017022677.1 | 65.8% | 41.2% | (many diffs) |
| 9 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001130010.3 | 65.1% | 65.1% | 1_294del |
| 10 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001321759.2 | 65.1% | 65.1% | 1_294del |
| 11 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001321761.2 | 63.7% | 63.7% | 1_294del;610_627del |
| 12 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001290233.2 | 54.3% | 50.6% | (many diffs) |
| 13 | human | 84529 | C15orf41 | chromosome 15 open reading ... | XR_931921.1 | 41.4% | 1_544del;965_1100del;1189_1190ins40 | |
| 14 | human | 84529 | C15orf41 | chromosome 15 open reading ... | NM_001321760.2 | 38.6% | 37.7% | (many diffs) |
| 15 | human | 84529 | C15orf41 | chromosome 15 open reading ... | XR_931924.1 | 16.5% | 1_544del;726_1556del;1925_3308del | |
| 16 | human | 84529 | C15orf41 | chromosome 15 open reading ... | XR_931922.1 | 16.4% | 1_544del;726_1582del;1951_3334del | |
| 17 | mouse | 399568 | BC052040 | cDNA sequence BC052040 | NM_207264.4 | 59.1% | 61.5% | (many diffs) |
| 18 | mouse | 399568 | BC052040 | cDNA sequence BC052040 | NM_001145898.1 | 57.9% | 60.2% | (many diffs) |
| 19 | mouse | 399568 | BC052040 | cDNA sequence BC052040 | XM_017319081.1 | 50.8% | 44.8% | (many diffs) |
| 20 | mouse | 399568 | BC052040 | cDNA sequence BC052040 | XM_017319079.1 | 48% | 38.9% | (many diffs) |
| 21 | mouse | 399568 | BC052040 | cDNA sequence BC052040 | XM_017319080.1 | 48% | 38.9% | (many diffs) |
| 22 | mouse | 399568 | BC052040 | cDNA sequence BC052040 | XM_006499845.3 | 46.3% | 37.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 615
- ORF length:
- 549
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCGGCTTATA CTGGAGAGGT TTCTACAGGA ACACGAGGAA ACTCCACCCT 121 CCAAGTCTAT TATAAATAGT ATGCTACGGG ACCCTTCTCA GATTCCAGAT GGAGTTCTAG 181 CAAATCAGGT CTATCAGTGC ATTGTGAACG ACTGCTGTTA CGGACCACTA GTGGACTGCA 241 TCAAGCATGC CATTGGTCAT GAGCATGAGG TCCTGCTGAG AGACTTGCTT CTAGAGAAAA 301 ACCTGTCCTT CCTAGATGAA GATCAGCTTC GTGCAAAGGG TTATGACAAA ACACCAGACT 361 TCATTTTACA AGTACCAGTT GCTGTAGAAG GGCACATAAT TCACTGGATT GAAAGCAAAG 421 CCTCATTTGG TGATGAATGT AGCCACCACG CCTACCTGCA TGACCAGTTC TGGAGCTACT 481 GGAATAGATT TGGGCCAGGC TTAGTCATCT ATTGGTATGG ATTTATCCAG GAGCTGGACT 541 GCAACCGGGA AAGGGGCATC CTGCTCAAAG CCTGTTTCCC CACGAACATT GTCACCTTAT 601 GCCACAGCAT AGCTTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 661 tatcaatttg ttgcaacgaa c