Construct: ORF ccsbBroadEn_04397

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014040.1_s300c1, BRDN0000393064
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C15orf41 (84529)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84529 C15orf41 chromosome 15 open reading ... NM_001290232.2 100% 100%
2 human 84529 C15orf41 chromosome 15 open reading ... NM_001321756.2 100% 100%
3 human 84529 C15orf41 chromosome 15 open reading ... NM_032499.6 100% 100%
4 human 84529 C15orf41 chromosome 15 open reading ... XM_024450088.1 100% 100%
5 human 84529 C15orf41 chromosome 15 open reading ... NM_001321757.2 86.3% 86.3% 0_1ins75
6 human 84529 C15orf41 chromosome 15 open reading ... NM_001321758.2 75% 75% 1_183del
7 human 84529 C15orf41 chromosome 15 open reading ... XM_017022676.1 65.8% 41.2% (many diffs)
8 human 84529 C15orf41 chromosome 15 open reading ... XM_017022677.1 65.8% 41.2% (many diffs)
9 human 84529 C15orf41 chromosome 15 open reading ... NM_001130010.3 65.1% 65.1% 1_294del
10 human 84529 C15orf41 chromosome 15 open reading ... NM_001321759.2 65.1% 65.1% 1_294del
11 human 84529 C15orf41 chromosome 15 open reading ... NM_001321761.2 63.7% 63.7% 1_294del;610_627del
12 human 84529 C15orf41 chromosome 15 open reading ... NM_001290233.2 54.3% 50.6% (many diffs)
13 human 84529 C15orf41 chromosome 15 open reading ... XR_931921.1 41.4% 1_544del;965_1100del;1189_1190ins40
14 human 84529 C15orf41 chromosome 15 open reading ... NM_001321760.2 38.6% 37.7% (many diffs)
15 human 84529 C15orf41 chromosome 15 open reading ... XR_931924.1 16.5% 1_544del;726_1556del;1925_3308del
16 human 84529 C15orf41 chromosome 15 open reading ... XR_931922.1 16.4% 1_544del;726_1582del;1951_3334del
17 mouse 399568 BC052040 cDNA sequence BC052040 NM_207264.4 59.1% 61.5% (many diffs)
18 mouse 399568 BC052040 cDNA sequence BC052040 NM_001145898.1 57.9% 60.2% (many diffs)
19 mouse 399568 BC052040 cDNA sequence BC052040 XM_017319081.1 50.8% 44.8% (many diffs)
20 mouse 399568 BC052040 cDNA sequence BC052040 XM_017319079.1 48% 38.9% (many diffs)
21 mouse 399568 BC052040 cDNA sequence BC052040 XM_017319080.1 48% 38.9% (many diffs)
22 mouse 399568 BC052040 cDNA sequence BC052040 XM_006499845.3 46.3% 37.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
615
ORF length:
549
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TCGGCTTATA CTGGAGAGGT TTCTACAGGA ACACGAGGAA ACTCCACCCT
121CCAAGTCTAT TATAAATAGT ATGCTACGGG ACCCTTCTCA GATTCCAGAT GGAGTTCTAG
181CAAATCAGGT CTATCAGTGC ATTGTGAACG ACTGCTGTTA CGGACCACTA GTGGACTGCA
241TCAAGCATGC CATTGGTCAT GAGCATGAGG TCCTGCTGAG AGACTTGCTT CTAGAGAAAA
301ACCTGTCCTT CCTAGATGAA GATCAGCTTC GTGCAAAGGG TTATGACAAA ACACCAGACT
361TCATTTTACA AGTACCAGTT GCTGTAGAAG GGCACATAAT TCACTGGATT GAAAGCAAAG
421CCTCATTTGG TGATGAATGT AGCCACCACG CCTACCTGCA TGACCAGTTC TGGAGCTACT
481GGAATAGATT TGGGCCAGGC TTAGTCATCT ATTGGTATGG ATTTATCCAG GAGCTGGACT
541GCAACCGGGA AAGGGGCATC CTGCTCAAAG CCTGTTTCCC CACGAACATT GTCACCTTAT
601GCCACAGCAT AGCTTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
661tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)