Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04885
- Subject:
- NR_031764.2
- Aligned Length:
- 2350
- Identities:
- 896
- Gaps:
- 1321
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGCCTTTGGCGCACTGAGGTGCACAGGGTCCCTTAGCCGGGCGCAGGGCGCGCAGCCCAGGCTGAGATCCGC 74
Query 1 -------------------ATGGTTGGGCAGCGGGTGCTGCTTCTAGTGGCCTTCCTTCTTTCTGGGGTCCTGC 55
||||.|||||||||.|||||.||||||||||.|||||||||..||||||||||||
Sbjct 75 GGCTTCCGTAGAAGTGAGCATGGCTGGGCAGCGAGTGCTTCTTCTAGTGGGCTTCCTTCTCCCTGGGGTCCTGC 148
Query 56 TCTCAGAGGCTGCCAAAATCCTGACAATATCTACACTGGGTGGAAGCCATTACCTACTGTTGGACCGGGTGTCT 129
|||||||||||||||||||||||||||||||||||.|.||||||||||||||.||||||.||||||||||.|||
Sbjct 149 TCTCAGAGGCTGCCAAAATCCTGACAATATCTACAGTAGGTGGAAGCCATTATCTACTGATGGACCGGGTTTCT 222
Query 130 CAGATTCTTCAAGAGCATGGTCATAATGTGACTATGCTTCATCAGAGTGGAAAG------TTTTTGATCCCAGA 197
||||||||||||||.||.|||||||||||.||.||||||.|.||.| |||| |||| ||.|||||
Sbjct 223 CAGATTCTTCAAGATCACGGTCATAATGTCACCATGCTTAACCACA----AAAGAGGTCCTTTT--ATGCCAGA 290
Query 198 TATTAAAGAGGAGGAAAAATCATACCAAGTTATCAGGTGGTTTTCACCTGAAGATCATCAAAAAAGAATTAAGA 271
|.|||||.||||.|||||||||||.|||||||||||.|||.||.||||||||||||||| |||.||||||.|
Sbjct 291 TTTTAAAAAGGAAGAAAAATCATATCAAGTTATCAGTTGGCTTGCACCTGAAGATCATC-AAAGAGAATTTA-- 361
Query 272 AGCATTTTGATAGCTACATAGAAACAGCATTGGATGGCAGAAAAGAATCTGAAGCCCTTGTAAAGCTAATGGAA 345
||||||.|
Sbjct 362 ----------------------------------------AAAAGAGT-------------------------- 369
Query 346 ATATTTGGGACTCAATGTAGTTATTTGCTAAGCAGAAAGGATATAATGGATTCCTTAAAGAATGAGAACTATGA 419
Sbjct 370 -------------------------------------------------------------------------- 369
Query 420 TCTGGTATTTGTTGAAGCATTTGATTTCTGTTCTTTCCTGATTGCTGAGAAGCTTGTGAAACCATTTGTGGCCA 493
||||||||||
Sbjct 370 -------------------TTTGATTTCT--------------------------------------------- 379
Query 494 TTCTTCCCACCACATTCGGCTCTTTGGATTTTGGGCTACCAAGCCCCTTGTCTTATGTTCCAGTATTCCCTTCC 567
Sbjct 380 -------------------------------------------------------------------------- 379
Query 568 TTGCTGACTGATCACATGGACTTCTGGGGCCGAGTGAAGAATTTTCTGATGTTCTTTAGTTTCTCCAGGAGCCA 641
||||| |||||| .||||||
Sbjct 380 ---------------------TTCTG---------GAAGAA-----------ACTTTAG--------------- 397
Query 642 ATGGGACATGCAGTCTACATTTGACAACACCATCAAGGAGCATTTCCCAGAAGGCTCTAGGCCAGTTTTGTCTC 715
Sbjct 398 -------------------------------------------------------------------------- 397
Query 716 ATCTTCTACTGAAAGCAGAGTTGTGGTTTGTTAACTCTGATTTTGCCTTTGATTTTGCCCGGCCCCTGCTTCCC 789
||||
Sbjct 398 ----------------------GTGG------------------------------------------------ 401
Query 790 AACACTGTTTATATTGGAGGCTTGATGGAAAAACCTATTAAACCAGTACCACAAGACTTGGACAACTTCATTGC 863
||.||||||||.|||||||||||
Sbjct 402 ---------------------------------------------------CAGGACTTGGAGAACTTCATTGC 424
Query 864 CAACTTTGGGGATGCAGGGTTTGTCCTTGTGGCCTTTGGCTCCATGTTGAACACCCATCAG--TCCCAGGAAGT 935
|||.||||||||..|.||.||||||||||||.||||.|||||||||.||||||||..|||| ||| ||||.|
Sbjct 425 CAAGTTTGGGGACTCTGGTTTTGTCCTTGTGACCTTGGGCTCCATGGTGAACACCTGTCAGAATCC--GGAAAT 496
Query 936 CCTCAAGAAGATGCACAATGCCTTTGCCCACCTCCCTCAAGGAGTGATATGGACATGTCAGAGTTCTCATTGGC 1009
|.|||||.|||||.|||||||||||||.|||||.||.|||||.||||||||||..||||||.||||||||||||
Sbjct 497 CTTCAAGGAGATGAACAATGCCTTTGCTCACCTACCCCAAGGGGTGATATGGAAGTGTCAGTGTTCTCATTGGC 570
Query 1010 CCAGAGATGTTCATTTGGCCACAAATGTGAAAATTGTGGACTGGCTTCCTCAGAGTGACCTCCTGGCTCACCCC 1083
|||.||||||.||..||||..||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 571 CCAAAGATGTCCACCTGGCTGCAAATGTGAAAATTGTGGACTGGCTTCCTCAGAGTGACCTCCTGGCTCACCCA 644
Query 1084 AGCATCCGTCTTTTTGTCACTCATGGTGGGCAGAACAGCGTAATGGAGGCCATCCGTCATGGTGTGCCCATGGT 1157
|||||||||||.||||||||.||.||.||||||||.|||.|||||||||||||||..|||||||||||||||||
Sbjct 645 AGCATCCGTCTGTTTGTCACCCACGGCGGGCAGAATAGCATAATGGAGGCCATCCAGCATGGTGTGCCCATGGT 718
Query 1158 GGGATTACCAGTCAATGGAGACCAGCATGGAAACATGGTCCGAGTAGTAGCCAAAAATTATGGTGTCTCTATCC 1231
|||..|.||..||..|||||||||||.||.|||||||||||||||||.|||||||||.|.||||||.|||||.|
Sbjct 719 GGGGATCCCTCTCTTTGGAGACCAGCCTGAAAACATGGTCCGAGTAGAAGCCAAAAAGTTTGGTGTTTCTATTC 792
Query 1232 GGTTGAATCAGGTCACAGCCGACACACTGACACTTACAATGAAACAAGTCATAGAAGACAAGAGGTACAAGTCG 1305
.|||.||..||.|||..||.||.|||.||.|.||||..|||||||||.||||.|||||||||||.||||||||.
Sbjct 793 AGTTAAAGAAGCTCAAGGCAGAGACATTGGCTCTTAAGATGAAACAAATCATGGAAGACAAGAGATACAAGTCC 866
Query 1306 GCAGTGGTGGCAGCCAGTGTCATCCTGCACTCTCAGCCCCTGAGCCCCGCACAGCGGCTGGTGGGCTGGATCGA 1379
||.|..|||||.||||||||||||||||.|||.||.||.||.||||||.||||||||||||||||||||||.||
Sbjct 867 GCGGCAGTGGCTGCCAGTGTCATCCTGCGCTCCCACCCGCTCAGCCCCACACAGCGGCTGGTGGGCTGGATTGA 940
Query 1380 CCACATCCTCCAGACTGGGGGAGCGACGCACCTCAAGCCCTATGCCTTCCAGCAGCCTTGGCATGAGCAGTACC 1453
||||.||||||||||.|||||.||||||||||||||||||||||.|||.||||||||.||||||||||||||||
Sbjct 941 CCACGTCCTCCAGACAGGGGGCGCGACGCACCTCAAGCCCTATGTCTTTCAGCAGCCCTGGCATGAGCAGTACC 1014
Query 1454 TCATTGATGTCTTTGTGTTTCTGCTGGGGCTCACTCTGGGCACTATGTGGCTTTGTGGGAAGCTGCTGGGTGTG 1527
|..|.||.||.|||||||||||||||||||||||||||||.|||.|.|||||||||||||||||||||||..||
Sbjct 1015 TGCTCGACGTTTTTGTGTTTCTGCTGGGGCTCACTCTGGGGACTCTATGGCTTTGTGGGAAGCTGCTGGGCATG 1088
Query 1528 GTGGCCAGGTGGCTGCGTGGGGCCAGGAAGGTGAAGAAGACA-------------------------------- 1569
|..|.|.|||||||||||||||||||.|||||||||.|||||
Sbjct 1089 GCTGTCTGGTGGCTGCGTGGGGCCAGAAAGGTGAAGGAGACATAAGGCCAGGTGCAGCCTTGGCGGGGTCTGTT 1162
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1163 TGGTGGGCGATGTCACCATTTCTAGGGAGCTTCCCACTAGTTCTGGCAGCCCCATTCTCTAGTCCTTCTAGTTA 1236
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1237 TCTCCTGTTTTCTTGAAGAACAGGAAAAATGGCCAAAAATCATCCTTTCCACTTGCTAATTTTGCTACAAATTC 1310
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1311 ATCCTTACTAGCTCCTGCCTGCTAGCAGAATTCTTTCCAGTCCTCTTGTCCTCCTTTGTTTGCCATCAGCAAGG 1384
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1385 GCTATGCTGTGATTCTGTCTCTGAGTGACTTGGACCACTGACCCTCAGATTTCCAGCCTTAAAATCCACCTTCC 1458
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1459 TTCTCATGCGCCTCTCCGAATCACACCCTGACTCTTCCAGCCTCCATGTCCAGACCTAGTCAGCCTCTCTCACT 1532
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1533 CCTGCCCCTACTATCTATCATGGAATAACATCCAAGAAAGACACCTTGCATATTCTTTCAGTTTCTGTTTTGTT 1606
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1607 CTCCCACATATTCTCTTCAATGCTCAGGAAGCCTGCCCTGTGCTTGAGAGTTCAGGGCCGGACACAGGCTCACA 1680
Query 1570 -------------------------------------------------------------------------- 1569
Sbjct 1681 GGTCTCCACATTGGGTCCCTGTCTCTGGTGCCCACAGTGAGCTCCTTCTTGGCTGAGCAGGCTTGGAGACTGTA 1754
Query 1570 -------------------------------------------------------- 1569
Sbjct 1755 GGTTTCCAGATTTCCTGAAAAATAAAAGTTTACAGCGTTATCTCTCCCCAACCTCA 1810
