Transcript: Human NR_031764.2

Homo sapiens UDP glycosyltransferase family 3 member A2 (UGT3A2), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
UGT3A2 (167127)
Length:
1810
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_031764.2
NBCI Gene record:
UGT3A2 (167127)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_031764.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000442854 GGACCACTGACCCTCAGATTT pLKO_005 1416 3UTR 100% 13.200 9.240 N UGT3A2 n/a
2 TRCN0000152351 CCTTCTAGTTATCTCCTGTTT pLKO.1 1226 3UTR 100% 4.950 3.465 N UGT3A2 n/a
3 TRCN0000151772 CAATATCTACAGTAGGTGGAA pLKO.1 173 3UTR 100% 2.640 1.848 N UGT3A2 n/a
4 TRCN0000152776 GAATAGCATAATGGAGGCCAT pLKO.1 677 3UTR 100% 2.160 1.512 N UGT3A2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_031764.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05141 pDONR223 100% 44.2% None 1_93del;404_405ins532;1131_1810del n/a
2 ccsbBroad304_05141 pLX_304 0% 44.2% V5 1_93del;404_405ins532;1131_1810del n/a
3 TRCN0000475349 CCCCTCTAGATCCTGCCCAAAGGG pLX_317 28.1% 44.2% V5 1_93del;404_405ins532;1131_1810del n/a
4 ccsbBroadEn_04885 pDONR223 100% 38.1% None (many diffs) n/a
5 ccsbBroad304_04885 pLX_304 0% 38.1% V5 (many diffs) n/a
6 TRCN0000471431 GCAGTGCGTTCTTTAACGATTGAA pLX_317 28.1% 38.1% V5 (many diffs) n/a
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