Construct: ORF ccsbBroadEn_04885

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003019.1_s300c1, BRDN0000394167
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UGT3A1 (133688)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 133688 UGT3A1 UDP glycosyltransferase fam... NM_152404.4 100% 100%
2 human 133688 UGT3A1 UDP glycosyltransferase fam... XM_011513958.2 93.4% 93.4% 93_94ins102
3 human 133688 UGT3A1 UDP glycosyltransferase fam... XM_011513957.2 90.5% 85.6% (many diffs)
4 human 133688 UGT3A1 UDP glycosyltransferase fam... XM_005248243.4 89.6% 89.6% 0_1ins162
5 human 133688 UGT3A1 UDP glycosyltransferase fam... XM_011513959.2 89.6% 89.6% 0_1ins162
6 human 167127 UGT3A2 UDP glycosyltransferase fam... NM_174914.4 85.8% 78.8% (many diffs)
7 human 167127 UGT3A2 UDP glycosyltransferase fam... XM_011513988.2 82.1% 74.9% (many diffs)
8 human 167127 UGT3A2 UDP glycosyltransferase fam... NM_001168316.2 80.8% 73.8% (many diffs)
9 human 167127 UGT3A2 UDP glycosyltransferase fam... XM_017009150.1 79.1% 72.3% (many diffs)
10 human 133688 UGT3A1 UDP glycosyltransferase fam... XR_001741997.1 60.7% (many diffs)
11 human 133688 UGT3A1 UDP glycosyltransferase fam... XR_001741998.1 51.7% (many diffs)
12 human 133688 UGT3A1 UDP glycosyltransferase fam... NM_001171873.2 47.4% 44.3% (many diffs)
13 human 167127 UGT3A2 UDP glycosyltransferase fam... NR_031764.2 38.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1635
ORF length:
1569
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT TGGGCAGCGG GTGCTGCTTC TAGTGGCCTT CCTTCTTTCT GGGGTCCTGC
121TCTCAGAGGC TGCCAAAATC CTGACAATAT CTACACTGGG TGGAAGCCAT TACCTACTGT
181TGGACCGGGT GTCTCAGATT CTTCAAGAGC ATGGTCATAA TGTGACTATG CTTCATCAGA
241GTGGAAAGTT TTTGATCCCA GATATTAAAG AGGAGGAAAA ATCATACCAA GTTATCAGGT
301GGTTTTCACC TGAAGATCAT CAAAAAAGAA TTAAGAAGCA TTTTGATAGC TACATAGAAA
361CAGCATTGGA TGGCAGAAAA GAATCTGAAG CCCTTGTAAA GCTAATGGAA ATATTTGGGA
421CTCAATGTAG TTATTTGCTA AGCAGAAAGG ATATAATGGA TTCCTTAAAG AATGAGAACT
481ATGATCTGGT ATTTGTTGAA GCATTTGATT TCTGTTCTTT CCTGATTGCT GAGAAGCTTG
541TGAAACCATT TGTGGCCATT CTTCCCACCA CATTCGGCTC TTTGGATTTT GGGCTACCAA
601GCCCCTTGTC TTATGTTCCA GTATTCCCTT CCTTGCTGAC TGATCACATG GACTTCTGGG
661GCCGAGTGAA GAATTTTCTG ATGTTCTTTA GTTTCTCCAG GAGCCAATGG GACATGCAGT
721CTACATTTGA CAACACCATC AAGGAGCATT TCCCAGAAGG CTCTAGGCCA GTTTTGTCTC
781ATCTTCTACT GAAAGCAGAG TTGTGGTTTG TTAACTCTGA TTTTGCCTTT GATTTTGCCC
841GGCCCCTGCT TCCCAACACT GTTTATATTG GAGGCTTGAT GGAAAAACCT ATTAAACCAG
901TACCACAAGA CTTGGACAAC TTCATTGCCA ACTTTGGGGA TGCAGGGTTT GTCCTTGTGG
961CCTTTGGCTC CATGTTGAAC ACCCATCAGT CCCAGGAAGT CCTCAAGAAG ATGCACAATG
1021CCTTTGCCCA CCTCCCTCAA GGAGTGATAT GGACATGTCA GAGTTCTCAT TGGCCCAGAG
1081ATGTTCATTT GGCCACAAAT GTGAAAATTG TGGACTGGCT TCCTCAGAGT GACCTCCTGG
1141CTCACCCCAG CATCCGTCTT TTTGTCACTC ATGGTGGGCA GAACAGCGTA ATGGAGGCCA
1201TCCGTCATGG TGTGCCCATG GTGGGATTAC CAGTCAATGG AGACCAGCAT GGAAACATGG
1261TCCGAGTAGT AGCCAAAAAT TATGGTGTCT CTATCCGGTT GAATCAGGTC ACAGCCGACA
1321CACTGACACT TACAATGAAA CAAGTCATAG AAGACAAGAG GTACAAGTCG GCAGTGGTGG
1381CAGCCAGTGT CATCCTGCAC TCTCAGCCCC TGAGCCCCGC ACAGCGGCTG GTGGGCTGGA
1441TCGACCACAT CCTCCAGACT GGGGGAGCGA CGCACCTCAA GCCCTATGCC TTCCAGCAGC
1501CTTGGCATGA GCAGTACCTC ATTGATGTCT TTGTGTTTCT GCTGGGGCTC ACTCTGGGCA
1561CTATGTGGCT TTGTGGGAAG CTGCTGGGTG TGGTGGCCAG GTGGCTGCGT GGGGCCAGGA
1621AGGTGAAGAA GACATGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1681tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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