Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07403
- Subject:
- NM_001366425.1
- Aligned Length:
- 4639
- Identities:
- 1222
- Gaps:
- 3359
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCTCCACACTCCACTCGGTTTTCTTCACCCTGAAGGTCAGCATCCTGCTGGGGTCCCTGCTGGGGCTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGGGCCTTGAGTTCATGGGCCTCCCCAACCAGTGGGCCCGCTACCTCCGCTGGGATGCCAGCACACGCAGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTGAGTTTCCAGTTCAAGACCAACGTCTCTACGGGGCTGCTCCTCTACCTGGATGATGGCGGCGTCTGCGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCCTATGCCTCTCCCTGGTGGATGGCCGCGTTCAGCTCCGCTTCAGCATGGACTGTGCCGAGACTGCCGTGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTCCAACAAGCAGGTGAATGACAGCAGCTGGCACTTCCTCATGGTGAGCCGTGACCGCCTGCGCACGGTGCTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCTTGATGGCGAGGGCCAGTCTGGGGAGCTGCAGCCCCAGCGGCCCTACATGGATGTGGTCAGTGACTTGTTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTTGGTGGAGTCCCTACTGACATACGACCTTCTGCCCTGACCCTTGATGGAGTTCAGGCCATGCCCGGCTTCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGGTTAATTCTGGATCTCAAGTATGGAAACTCGGAGCCTCGGCTTCTGGGGAGCCGGGGTGTCCAGATGGATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCGAGGGACCCTGTGGTGAGCGTCCCTGTGAAAATGGTGGGATCTGCTTTCTCCTGGACGGCCACCCCACCTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GACTGTTCTACCACTGGCTATGGTGGCAAGCTCTGCTCAGAAGATGTCAGTCAAGATCCAGGCCTCTCCCACCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CATGATGAGTGAACAAGCTCGAGAGGAGAATGTGGCCACTTTCCGAGGCTCAGAGTATCTGTGCTACGACCTGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCAGAACCCGATCCAGAGCAGCAGTGATGAAATCACCCTCTCCTTTAAGACCTGGCAGCGTAACGGCCTCATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGCACACGGGCAAGTCGGCTGACTATGTCAACCTGGCTCTGAAGGATGGTGCGGTCTCCTTGGTCATTAACCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGGGTCCGGGGCCTTTGAGGCCATTGTGGAGCCAGTGAATGGAAAATTCAACGACAACGCCTGGCATGATGTCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAGTGACACGCAACCTCCGGCAGGTGACAATCTCTGTGGATGGCATTCTTACCACGACGGGCTACACTCAAGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GACTATACCATGCTGGGCTCGGACGACTTCTTCTATGTAGGAGGAAGCCCAAGTACCGCTGACTTGCCTGGCTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCTGTCAGCAACAACTTCATGGGCTGCCTTAAAGAGGTTGTTTATAAGAATAATGACATCCGTCTGGAGCTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTCGCCTGGCCCGGATTGCGGACACCAAGATGAAAATCTATGGCGAAGTTGTGTTTAAGTGTGAGAATGTGGCC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACACTGGACCCCATCAACTTTGAGACCCCAGAGGCTTACATCAGCTTGCCCAAGTGGAACACTAAACGTATGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTCCATCTCCTTTGACTTCCGCACCACAGAGCCCAATGGCCTGATCCTCTTCACTCATGGAAAGCCCCAAGAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGAAGGATGCTCGGAGCCAGAAGAATACAAAAGTAGACTTCTTTGCCGTGGAACTCCTCGATGGCAACCTGTAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTGCTGCTTGACATGGGCTCTGGCACCATCAAAGTGAAAGCCACTCAGAAGAAAGCCAATGATGGGGAATGGTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCATGTGGACATTCAGCGAGATGGCAGATCAGGTACTATATCAGTGAACAGCAGGCGCACGCCATTCACCGCCA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTGGGGAGAGCGAGATCCTGGACCTGGAAGGAGACATGTACCTGGGAGGGCTGCCGGAGAACCGTGCTGGCCTT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATTCTCCCCACCGAGCTGTGGACTGCCATGCTCAACTATGGCTACGTGGGCTGCATCCGCGACCTATTCATTGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGGGCGCAGCAAGAACATTCGACAGCTGGCAGAGATGCAGAATGCTGCGGGTGTCAAGTCCTCCTGTTCACGGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGAGTGCCAAGCAGTGTGACAGCTACCCCTGCAAGAATAATGCTGTGTGCAAGGACGGCTGGAACCGCTTCATC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGCGACTGCACCGGCACCGGATACTGGGGAAGAACCTGCGAAAGGGAGGCATCCATCCTGAGCTATGATGGTAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATGTACATGAAGATCATCATGCCCATGGTCATGCATACTGAGGCAGAGGATGTGTCCTTCCGCTTCATGTCCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGCGAGCTTATGGGCTGCTGGTGGCTACGACCTCCAGGGACTCTGCCGACACCCTGCGTCTGGAGCTGGATGGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGCGTGTCAAGCTCATGGTTAACTTAGACTGTATCAGGATAAACTGTAACTCCAGCAAAGGACCAGAGACCTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTATGCAGGGCAGAAGCTCAATGACAACGAGTGGCACACCGTTCGGGTGGTGCGGAGAGGAAAAAGCCTTAAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TAACCGTGGATGATGATGTGGCTGAGGGTACAATGGTGGGAGACCATACCCGTTTGGAGTTCCACAACATTGAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACGGGAATCATGACTGAGAAACGCTACATCTCCGTTGTCCCCTCCAGCTTTATTGGCCATCTGCAGAGCCTCAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTTTAATGGCCTTCTCTACATTGACTTGTGCAAAAATGGTGACATTGATTATTGTGAGCTGAAGGCTCGTTTTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GACTGAGGAACATCATCGCTGACCCTGTCACCTTTAAGACCAAGAGCAGCTACCTGAGCCTTGCCACTCTTCAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCTTACACCTCCATGCACCTCTTCTTCCAGTTCAAGACCACCTCACCAGATGGCTTCATTCTCTTCAATAGTGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGATGGCAATGACTTCATTGCAGTCGAGCTTGTCAAGGGGTATATACACTACGTTTTTGACCTCGGAAACGGTC 2812
Query 1 ------------------------------------ATG--CACCTG----AGAAT-------CCACGCGAGAC 25
||| .|||.| |.||| .|||.||.|||
Sbjct 2813 CCAATGTGATCAAAGGCAACAGTGACCGCCCCCTGAATGACAACCAGTGGCACAATGTCGTCATCACTCGGGAC 2886
Query 26 ----GGAGCCCTCCTCGCC-------GGCCGGCC----TGGACGCTTGGG------------------ATCTGG 66
|.|.|.|||.|.||| ||.| .|| |||.|.||..|| ||||||
Sbjct 2887 AATAGTAACACTCATAGCCTGAAAGTGGAC-ACCAAAGTGGTCACTCAGGTTATCAATGGTGCCAAAAATCTGG 2959
Query 67 ---------------------TTCCTGTTCTG------GGGATGTA-----------------TCGTCAGCTCT 96
|..|||.|||| ||.||||| ||||...||||
Sbjct 2960 ATTTGAAAGGTGATCTCTATATGGCTGGTCTGGCCCAAGGCATGTACAGCAACCTCCCAAAGCTCGTGGCCTCT 3033
Query 97 ---GTATGGAGTTC------TTCTA--AT--GTAG-CTT---------CCT------CCTCCTCCA----CCTC 137
| ||||..||| .|||| || ||.| ||| ||| ||||.||.| .|||
Sbjct 3034 CGAG-ATGGCTTTCAGGGCTGTCTAGCATCAGTGGACTTGAATGGACGCCTGCCAGACCTCATCAATGATGCTC 3106
Query 138 TTCCTCGCCGGGGTCTCACTCTCAGCACGAGC--------------ACCATTTCCA--TGGCAGCAAGCATCAC 195
|||.|||..|.|| .|||..||||| .|||.|.||| ||.|||.||| |.
Sbjct 3107 TTCATCGGAGCGG--------ACAGATCGAGCGTGGCTGTGAAGGACCCAGTACCACCTGCCAGGAAG----AT 3168
Query 196 TCA-GTGCCTA------TTTCT------ATCTATCG------TTCCCCTGT--TTCCCTTCGAGGA-------- 240
||| |||||.| ..||| |.|.||.| |||.||||| || .|||.|.||
Sbjct 3169 TCATGTGCCAACCAGGGGGTCTGCATGCAACAATGGGAGGGCTTCACCTGTGATT--GTTCTATGACCTCTTAT 3240
Query 241 ---GGACAC------------GCTGGCGCTACGTACATCTTTGGGAAAAGTGGTGGGCTTATCCTCTACACCTG 299
|||.|| .||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3241 TCTGGAAACCAGTGCAATGATCCTGGCGCTACGTACATCTTTGGGAAAAGTGGTGGGCTTATCCTCTACACCTG 3314
Query 300 GCCAGCCAATGACAGGCCCAGCACGCGGTCTGACCGCCTTGCCGTGGGCTTCAGCACCACTGTGAAGGATGGCA 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3315 GCCAGCCAATGACAGGCCCAGCACGCGGTCTGACCGCCTTGCCGTGGGCTTCAGCACCACTGTGAAGGATGGCA 3388
Query 374 TCTTGGTCCGCATCGACAGTGCTCCAGGACTTGGTGACTTCCTCCAGCTTCACATAGAACAGGGGAAAATTGGA 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3389 TCTTGGTCCGCATCGACAGTGCTCCAGGACTTGGTGACTTCCTCCAGCTTCACATAGAACAGGGGAAAATTGGA 3462
Query 448 GTTGTCTTCAACATTGGCACAGTTGACATCTCCATCAAAGAGGAGAGAACCCCTGTAAATGACGGCAAATACCA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3463 GTTGTCTTCAACATTGGCACAGTTGACATCTCCATCAAAGAGGAGAGAACCCCTGTAAATGACGGCAAATACCA 3536
Query 522 TGTGGTACGCTTCACCAGGAACGGCGGCAACGCCACCCTGCAGGTGGACAACTGGCCAGTGAATGAACATTATC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3537 TGTGGTACGCTTCACCAGGAACGGCGGCAACGCCACCCTGCAGGTGGACAACTGGCCAGTGAATGAACATTATC 3610
Query 596 CTACAGGCCGGCAGTTAACCATCTTCAACACTCAGGCGCAAATAGCCATTGGTGGAAAGGACAAAGGACGCCTC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3611 CTACAGGCCGGCAGTTAACCATCTTCAACACTCAGGCGCAAATAGCCATTGGTGGAAAGGACAAAGGACGCCTC 3684
Query 670 TTCCAAGGCCAACTCTCTGGGCTCTATTATGATGGTTTGAAAGTACTGAACATGGCGGCTGAGAACAACCCCAA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3685 TTCCAAGGCCAACTCTCTGGGCTCTATTATGATGGTTTGAAAGTACTGAACATGGCGGCTGAGAACAACCCCAA 3758
Query 744 TATTAAAATCAATGGAAGTGTTCGGCTGGTTGGAGAAGTCCCATCAATTTTGGGAACAACACAGACGACCTCCA 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3759 TATTAAAATCAATGGAAGTGTTCGGCTGGTTGGAGAAGTCCCATCAATTTTGGGAACAACACAGACGACCTCCA 3832
Query 818 TGCCACCAGAAATGTCTACTACTGTCATGGAAACCACTACTACAATGGCGACTACCACAACCCGTAAGAATCGC 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3833 TGCCACCAGAAATGTCTACTACTGTCATGGAAACCACTACTACAATGGCGACTACCACAACCCGTAAGAATCGC 3906
Query 892 TCTACAGCCAGCATTCAGCCAACATCAGATGATCTTGTTTCATCTGCTGAATGTTCAAGTGATGATGAAGACTT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3907 TCTACAGCCAGCATTCAGCCAACATCAGATGATCTTGTTTCATCTGCTGAATGTTCAAGTGATGATGAAGACTT 3980
Query 966 TGTTGAATGTGAGCCGAGTACAG--------------------------------------------------- 988
|||||||||||||||||||||||
Sbjct 3981 TGTTGAATGTGAGCCGAGTACAGATAAGAGTCTTTCCACTTCAATCTTCGAAGGTGGCTACAAAGCACATGCGC 4054
Query 989 ------------------------------------------------GTAGG--------------------- 993
|||||
Sbjct 4055 CCAAGTGGGAATCCAAGGACTTTAGACCTAACAAAGTCTCCGAAACTAGTAGGACTACTACCACATCTTTATCC 4128
Query 994 -------------------------------------------------------------------------- 993
Sbjct 4129 CCTGAGCTGATCCGCTTCACAGCTTCCTCCTCGTCTGGGATGGTGCCCAAATTGCCAGCTGGCAAAATGAATAA 4202
Query 994 -------------------------------------------------------------------------- 993
Sbjct 4203 CCGTGATCTCAAACCCCAGCCTGATATAGTCTTGCTTCCGTTGCCCACTGCCTATGAGCTAGACAGCACCAAAC 4276
Query 994 --------------------------------------------TCAGCAAACCCCACGGAGCCGGGAATCAGA 1023
.|||||||||||||||||||||||||||||
Sbjct 4277 TGAAGAGCCCACTAATTACTTCCCCCATGTTCCGTAATGTGCCCACAGCAAACCCCACGGAGCCGGGAATCAGA 4350
Query 1024 CGGGTTCCGGGGGCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATGGTCGTCGGCATTGTGGCTGC 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4351 CGGGTTCCGGGGGCCTCAGAGGTGATCCGGGAGTCGAGCAGCACAACAGGGATGGTCGTCGGCATTGTGGCTGC 4424
Query 1098 TGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAG 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4425 TGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAG 4498
Query 1172 TGGACGAGACGCGGAACTACATCAGCAACTCCGCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCAGCAGAGC 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4499 TGGACGAGACGCGGAACTACATCAGCAACTCCGCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCAGCAGAGC 4572
Query 1246 TCGAAGAGCGGCCACAAGAAACAGAAAAACAAGGACAGGGAGCATTACGTG 1296
||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 4573 TCGAAGAGCGGCCACAAGAAACAGAAAAACAAGGACAGGGAGTATTACGTG 4623
