Construct: ORF ccsbBroadEn_07403

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015427.1_s300c1, BRDN0000390753
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NRXN3 (9369)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9369 NRXN3 neurexin 3 NM_138970.5 99.9% 99.7% 1288T>C
2 human 9369 NRXN3 neurexin 3 NM_001105250.3 92.7% 92.6% 600_689del;1075_1076insCAGGTAGGT;1369T>C
3 human 9369 NRXN3 neurexin 3 NM_001272020.2 67.6% 67.3% 989_990insT;994_1609del;1903T>C
4 human 9369 NRXN3 neurexin 3 NM_004796.6 37.8% 33.3% (many diffs)
5 human 9369 NRXN3 neurexin 3 XM_024449753.1 28.2% 24.9% (many diffs)
6 human 9369 NRXN3 neurexin 3 XM_017021807.1 28% 24.7% (many diffs)
7 human 9369 NRXN3 neurexin 3 XM_011537373.1 27.8% 24.5% (many diffs)
8 human 9369 NRXN3 neurexin 3 XM_017021805.1 27.4% 24.2% (many diffs)
9 human 9369 NRXN3 neurexin 3 XM_011537371.1 27.4% 24.2% (many diffs)
10 human 9369 NRXN3 neurexin 3 XM_017021804.1 27.4% 24.2% (many diffs)
11 human 9369 NRXN3 neurexin 3 NM_001366426.1 27.4% 24.1% (many diffs)
12 human 9369 NRXN3 neurexin 3 XM_024449752.1 27.3% 24.1% (many diffs)
13 human 9369 NRXN3 neurexin 3 XM_011537372.1 27.2% 24% (many diffs)
14 human 9369 NRXN3 neurexin 3 NM_001366425.1 26.3% 23.1% (many diffs)
15 human 9369 NRXN3 neurexin 3 XM_017021801.1 26.2% 23.1% (many diffs)
16 human 9369 NRXN3 neurexin 3 XM_017021800.1 26.1% 22.9% (many diffs)
17 human 9369 NRXN3 neurexin 3 XM_024449751.1 24.8% 21.9% (many diffs)
18 human 9369 NRXN3 neurexin 3 XM_024449750.1 24.6% 21.8% (many diffs)
19 human 9369 NRXN3 neurexin 3 XM_017021799.2 24.5% 21.6% (many diffs)
20 human 9369 NRXN3 neurexin 3 XM_011537367.1 24.5% 21.6% (many diffs)
21 human 9369 NRXN3 neurexin 3 XR_001750607.1 13.3% (many diffs)
22 human 9369 NRXN3 neurexin 3 XR_001750606.1 13.3% (many diffs)
23 human 9369 NRXN3 neurexin 3 NR_073546.2 13% (many diffs)
24 human 9369 NRXN3 neurexin 3 NR_158975.1 9.4% (many diffs)
25 mouse 18191 Nrxn3 neurexin III XM_006515569.3 91.6% 97.6% (many diffs)
26 mouse 18191 Nrxn3 neurexin III XM_017314989.1 85.7% 91.3% (many diffs)
27 mouse 18191 Nrxn3 neurexin III XM_006515568.3 85% 90.6% (many diffs)
28 mouse 18191 Nrxn3 neurexin III NM_001252074.2 69.6% 74.1% (many diffs)
29 mouse 18191 Nrxn3 neurexin III XM_006515567.3 62.1% 65.9% (many diffs)
30 mouse 18191 Nrxn3 neurexin III XM_017314988.1 59.3% 62.9% (many diffs)
31 mouse 18191 Nrxn3 neurexin III NM_172544.3 33.3% 31.9% (many diffs)
32 mouse 18191 Nrxn3 neurexin III XM_017314987.1 31.4% 30.1% (many diffs)
33 mouse 18191 Nrxn3 neurexin III XM_006515560.2 25.4% 24.2% (many diffs)
34 mouse 18191 Nrxn3 neurexin III XM_006515570.1 25.3% 24.1% (many diffs)
35 mouse 18191 Nrxn3 neurexin III XM_006515558.1 25% 23.9% (many diffs)
36 mouse 18191 Nrxn3 neurexin III XM_017314983.1 24.9% 23.7% (many diffs)
37 mouse 18191 Nrxn3 neurexin III XM_006515559.2 24.8% 23.7% (many diffs)
38 mouse 18191 Nrxn3 neurexin III XM_017314982.1 23.9% 22.9% (many diffs)
39 mouse 18191 Nrxn3 neurexin III XM_006515552.1 22.6% 21.6% (many diffs)
40 mouse 18191 Nrxn3 neurexin III XM_006515551.1 22.3% 21.4% (many diffs)
41 mouse 18191 Nrxn3 neurexin III XR_001780426.1 12.1% (many diffs)
42 mouse 18191 Nrxn3 neurexin III XR_381485.1 12.1% (many diffs)
43 mouse 18191 Nrxn3 neurexin III XR_001780425.1 12.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1362
ORF length:
1296
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA CCTGAGAATC CACGCGAGAC GGAGCCCTCC TCGCCGGCCG GCCTGGACGC
121TTGGGATCTG GTTCCTGTTC TGGGGATGTA TCGTCAGCTC TGTATGGAGT TCTTCTAATG
181TAGCTTCCTC CTCCTCCACC TCTTCCTCGC CGGGGTCTCA CTCTCAGCAC GAGCACCATT
241TCCATGGCAG CAAGCATCAC TCAGTGCCTA TTTCTATCTA TCGTTCCCCT GTTTCCCTTC
301GAGGAGGACA CGCTGGCGCT ACGTACATCT TTGGGAAAAG TGGTGGGCTT ATCCTCTACA
361CCTGGCCAGC CAATGACAGG CCCAGCACGC GGTCTGACCG CCTTGCCGTG GGCTTCAGCA
421CCACTGTGAA GGATGGCATC TTGGTCCGCA TCGACAGTGC TCCAGGACTT GGTGACTTCC
481TCCAGCTTCA CATAGAACAG GGGAAAATTG GAGTTGTCTT CAACATTGGC ACAGTTGACA
541TCTCCATCAA AGAGGAGAGA ACCCCTGTAA ATGACGGCAA ATACCATGTG GTACGCTTCA
601CCAGGAACGG CGGCAACGCC ACCCTGCAGG TGGACAACTG GCCAGTGAAT GAACATTATC
661CTACAGGCCG GCAGTTAACC ATCTTCAACA CTCAGGCGCA AATAGCCATT GGTGGAAAGG
721ACAAAGGACG CCTCTTCCAA GGCCAACTCT CTGGGCTCTA TTATGATGGT TTGAAAGTAC
781TGAACATGGC GGCTGAGAAC AACCCCAATA TTAAAATCAA TGGAAGTGTT CGGCTGGTTG
841GAGAAGTCCC ATCAATTTTG GGAACAACAC AGACGACCTC CATGCCACCA GAAATGTCTA
901CTACTGTCAT GGAAACCACT ACTACAATGG CGACTACCAC AACCCGTAAG AATCGCTCTA
961CAGCCAGCAT TCAGCCAACA TCAGATGATC TTGTTTCATC TGCTGAATGT TCAAGTGATG
1021ATGAAGACTT TGTTGAATGT GAGCCGAGTA CAGGTAGGTC AGCAAACCCC ACGGAGCCGG
1081GAATCAGACG GGTTCCGGGG GCCTCAGAGG TGATCCGGGA GTCGAGCAGC ACAACAGGGA
1141TGGTCGTCGG CATTGTGGCT GCTGCCGCCC TCTGCATCTT GATCCTCCTG TACGCCATGT
1201ACAAGTACAG GAACAGGGAC GAGGGGTCCT ATCAAGTGGA CGAGACGCGG AACTACATCA
1261GCAACTCCGC CCAGAGCAAC GGCACGCTCA TGAAGGAGAA GCAGCAGAGC TCGAAGAGCG
1321GCCACAAGAA ACAGAAAAAC AAGGACAGGG AGCATTACGT GTACCCAACT TTCTTGTACA
1381AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)