Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_07628
• Subject: XR_001746996.1
• Aligned Length: 3590
• Identities: 2503
• Gaps: 953

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CATGTGACAGCTAACATAAGGATTGAAGCTGATCAAAGCAGGAATATACATTTTATTCAATACCAGAGGTGGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCAGATCCATTCTTAATTATGCAAAATACCCTTATCACACAGCTCTTCTCATGTTTGTTTATTGAGGATTTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATCATTTGGAAATGACCACTCAGTCTGCATGTTACTGAGGTGTGGGATAAAATACAACCGTAAATTTCAAATT  222

Query    1  ----------------------------------ATGAGGG---------------TC--CCTGTAT-------  16
                                              ||||.||               ||  ||.| ||       
Sbjct  223  GAGTGTGATGAACGAGGGGGAAGAGAAATATCAAATGAAGGGGAAAGAAACAAAAATCGACCAG-ATGACAAAA  295

Query   17  TTGAGGATATAAAAGA-----TGAA------ACTGAAG-------AAGAAAAGAT------AGGGGA----AGA  62
            |||.|..|.|.|||||     ||||      |.|||||       |||||.|.||      |.||||    |||
Sbjct  296  TTGTGTGTTTTAAAGACTGACTGAAATGCACAGTGAAGAGTCCCTAAGAACATATTACGTGATGGGAAATGAGA  369

Query   63  AGAAAATGAA----------GAAGACCAGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCC  126
            |..||.||.|          ||.||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  AATAACTGCACTGCAAGCCTGATGA--AGGTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCC  441

Query  127  AGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATT  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  AGAAAATGCACGGAACTCATTAGCGATATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATT  515

Query  201  TGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCA  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  TGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTCTGAGGCAAAATACAAAGGCA  589

Query  275  CCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAA  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  CCATTAAAGCTGACCTTTCTAATTCTCTTTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAA  663

Query  349  GTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCA  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  664  GTTACACAGCTCCAGAGTGAGGTGGCCTACAAGCAGAAACATGATGCTGCCAAAGGATTCTCAGATTATGCCCA  737

Query  423  CATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAGTAATATTTCTTATAGGAAAG  496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  CATGAAGGAGCCCCCTGAGGTTAAACATGCCATGGAGGTCAATAAACACCAGAGTAATATTTCTTATAGGAAAG  811

Query  497  ACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCGACCAGACATCAAGATGGCAACCCAGATCTCTAAG  570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  ACGTGCAGGACACCCACACGTACAGTGCAGAACTTGACCGACCAGACATCAAGATGGCAACCCAGATCTCTAAG  885

Query  571  ATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGA  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  886  ATCATAAGCAATGCAGAATACAAGAAAGGACAAGGAATAATGAATAAAGAGCCCGCTGTAATTGGAAGACCAGA  959

Query  645  TTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGA  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  TTTTGAACATGCCGTGGAAGCTTCTAAACTTTCTAGTCAAATTAAATACAAAGAAAAATTTGATAATGAAATGA  1033

Query  719  AGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCG  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  AGGATAAGAAACATCATTACAATCCTCTTGAAAGTGCTTCTTTTAGGCAGAATCAGCTTGCTGCTACACTGGCG  1107

Query  793  AGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTT  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108  AGCAATGTGAAGTACAAGAAAGACATTCAAAATATGCATGATCCAGTTTCAGATCTCCCAAATTTGTTGTTTTT  1181

Query  867  AGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAA  940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  AGACCATGTTTTGAAAGCCAGCAAAATGCTCAGCGGCCGAGAATATAAAAAGCTCTTTGAGGAAAACAAAGGAA  1255

Query  941  TGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAA  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  TGTATCATTTTGATGCAGATGCTGTGGAACATCTGCACCATAAAGGCAATGCCGTCCTCCAAAGTCAGGTGAAA  1329

Query 1015  TATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTC  1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330  TATAAAGAAGAATATGAGAAAAATAAGGGAAAGCCAATGCTTGAATTTGTTGAGACACCATCATATCAAGCTTC  1403

Query 1089  AAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCAT  1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  AAAGGAGGCTCAAAAGATGCAAAGTGAAAAAGTTTACAAAGAGGATTTTGAGAAGGAGATTAAAGGAAGGTCAT  1477

Query 1163  CACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATAT  1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478  CACTGGATTTAGACAAGACTCCAGAATTTTTACATGTAAAGTACATCACCAACCTTCTGAGGGAGAAAGAATAT  1551

Query 1237  AAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGC  1310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552  AAAAAAGATTTGGAAAATGAGATAAAAGGGAAAGGAATGGAACTTAATTCAGAAGTTCTTGATATCCAAAGAGC  1625

Query 1311  AAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAA  1384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626  AAAGCGAGCCTCTGAAATGGCAAGTGAGAAAGAATACAAGAAAGACCTGGAGTCAATAATTAAAGGGAAAGGAA  1699

Query 1385  TGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTAT  1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700  TGCAAGCTGGCACTGACACCCTTGAAATGCAGCATGCCAAGAAGGCTGCAGAGATAGCGAGTGAGAAAGACTAT  1773

Query 1459  AAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGC  1532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774  AAAAGAGATCTGGAGACTGAAATTAAAGGGAAAGGGATGCAGGTGAGCACAGACACTCTTGATGTCCAGAGAGC  1847

Query 1533  TAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAA  1606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848  TAAGAAAGCATCCGAGATGGCCAGCCAGAAACAATACAAGAAGGACTTAGAAAATGAAATTAAAGGGAAAGGAA  1921

Query 1607  TGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTAT  1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922  TGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGAGAAAGTAT  1995

Query 1681  AAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGAC  1754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996  AAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGAC  2069

Query 1755  AACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAG  1828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070  AACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAG  2143

Query 1829  AGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACA  1902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144  AGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACA  2217

Query 1903  GCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGA  1976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218  GCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGA  2291

Query 1977  GCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGA  2050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292  GCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGA  2365

Query 2051  GTGCGGTAA------------------AATATAAGGGAGAACTTCAACGGGGAACTGCAATTTCTGATCCACCA  2106
            ||||||.||                  .||||                            |||||         
Sbjct 2366  GTGCGGCAAGTCGTTTCTGTTTCCTTTTATAT----------------------------TTTCT---------  2402

Query 2107  GAGCTGAAGAGGGCAAAAGAAAACCAGAAAAACATCAGCAATGTTTA-TTACAGAGGTCAGC---TGGGAAGAG  2176
                         ||||          .|.|||||     ||.|||| |||.|.|  |..||   |.||||| |
Sbjct 2403  -------------CAAA----------CATAACAT-----ATTTTTATTTAAAAA--TATGCCCTTTGGAAG-G  2445

Query 2177  CTACCACTTTAAGTGTAACTCCTGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATATTAGCTCGGTAAAATAT  2250
            |     |.|||        |||                                   |||||     |||.|| 
Sbjct 2446  C-----CATTA--------TCC-----------------------------------TTAGC-----AAACTA-  2465

Query 2251  ACCCAGGACCATAAACAGATGAAAGGTAGACCAAGTCTGATTTTAGATACACCTGCTATGAGACATGTTAAAGA  2324
            ||.|||||.|.||||              |||||            |||   |||        |||..|||.||
Sbjct 2466  ACACAGGAACGTAAA--------------ACCAA------------ATA---CTG--------CATAATAATGA  2502

Query 2325  -AGCACAAAATCATATTTCAATGGT-AAAATACCATGAAGATTTTGA----AAAAACAAAGGGGAGAGGCTTTA  2392
             |||             |.||||.| |.|||| ||||.|.|..|.||    ||.||||     ||.|       
Sbjct 2503  GAGC-------------TAAATGATGAGAATA-CATGGACACATAGAGGGGAATAACA-----GACA-------  2550

Query 2393  CTCCCGTCGTGGACGATCCTGT--GAC---AGA---------GAGAGTGAGG--------AAG-----------  2433
               |||        ||.|||||  |||   |||         |||.|.||||        |||           
Sbjct 2551  ---CCG--------GAGCCTGTTGGACGGGAGAGGATGGGAGGAGGGAGAGGATCCGGAAAAGTAACTGTTGAG  2613

Query 2434  ----------AACACCCAGGTG-----GTCAGCGATG---------CTGCCTATAAAGGGGTCCAC--CCTCAC  2481
                      ||..||..||||     ||||.|  ||         || ||.||||       |||  ..||||
Sbjct 2614  TACTGGGCTTAATGCCGGGGTGATGAAGTCATC--TGTACAACAAACT-CCCATAA-------CACAAGTTCAC  2677

Query 2482  ATCGTGGAGATGGACAGGAGACCTGGAATCATTGT-----TG-ACCTCAAAGTTTGGCGCACAGATCCTGGCTC  2549
            .| |||.|     ||   |.|||||.|  || |||     || ||.|.|||||||   ..|.|||...|     
Sbjct 2678  CT-GTGTA-----AC---AAACCTGCA--CA-TGTACCGCTGAACTTAAAAGTTT---TAAAAGAAAAT-----  2731

Query 2550  CATCTTCGACCTTGATCCCC-----------TGGAAGACAAT-AT-TCAGTCTAGAAGTCTCCATATGCTCTCT  2610
                   ||..||||.|..|           ||||.|  ||| || |||.|.||..|                |
Sbjct 2732  -------GAATTTGAGCAACATGCAATTATATGGATG--AATCATATCATTATAACA----------------T  2780

Query 2611  GAAAAGGCGAGTCACTATAGGCG-ACACTGGTCTCGATCCCATTCCAGCAGTA---CTTTCGGTACAGGT----  2676
            |||||    |||.|.|||    | |||                |.|||||.||   |||| .|||.|..|    
Sbjct 2781  GAAAA----AGTGAATAT----GTACA----------------TGCAGCATTAATTCTTT-TGTAAAATTTAAC  2829

Query 2677  --CT----------CGGAGACGACAGGTCAGAA-ATCTCCGAGATTT----ACCCTAGCT-----TTTCATGCT  2728
              ||          ||..||.||.| ..|.||| |||||| ||||||    |..|||.||     ||       
Sbjct 2830  AACTGCAATAATAACGATGATGATA-AACGGAATATCTCC-AGATTTAATAAAACTATCTAAAAATT-------  2894

Query 2729  GCAGTGAGGTAACAAG------------ACCGTCTG-AT-----GAAGGAGCACCTGTTCTTCCCGGAGCCTAT  2784
                     |||.|||            |||.|||| ||     ||         |||||         |.|.|
Sbjct 2895  ---------TAAAAAGGAAAAGTTTTACACCCTCTGCATTTTTGGA---------TGTTC---------CTTTT  2941

Query 2785  CAGCAAAGCCATTCCC------AAGGCTATG-GCTACATGCACCAG-----------------------ACC--  2826
            ||       ||||.||      ||||..||| .||.|.|| .||||                       |||  
Sbjct 2942  CA-------CATTTCCTTGTTGAAGGGCATGAACTGCGTG-TCCAGGAAATTTGGGACTGTGTTGCTGTACCTT  3007

Query 2827  AG-TGTG-----TCATCCATGAGATCAATGCAGCATTCACCAAATCTAAGGACC------TACCGAGCCATGTA  2888
            || ||||     |.||.||.||||||         ||||      .||||.|||      |||.|.||..|||.
Sbjct 3008  AGCTGTGTTTGCTTATTCAAGAGATC---------TTCA------TTAAGTACCCAAATGTACTGGGCATTGTC  3066

Query 2889  CGATTACAGTG----CCCAG-------GATG-----AAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTC  2946
            |        ||    |||||       ||||     ||.|..|||         ||||     |||      ||
Sbjct 3067  C--------TGGTCACCCAGACACAAAGATGGGTAAAATATAAGG---------GAGA-----ACT------TC  3112

Query 2947  AACG------TGCAGCCTATT-------GACGATGGCTGGATGTACGGCACAGTGCAGAGAACGGGGAGAA---  3004
            ||||      ||||    |||       .||.|..||||.|  .|.||||.|    |||.|||..|.|.||   
Sbjct 3113  AACGGGGAACTGCA----ATTTCTGATCCACCAGAGCTGAA--GAGGGCAAA----AGAAAACCAGAAAAACAT  3176

Query 3005  CAGGAATGCTCCCAGCGAATTACATTGAGTTTGTTAAT  3042
            |||.||||.                             
Sbjct 3177  CAGCAATGT-----------------------------  3185