Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_08125
• Subject: NM_001079903.1
• Aligned Length: 1873
• Identities: 1386
• Gaps: 242

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGATGGGCGCTGCGTCCCTGGAGGGCACGCGGGAGAGTTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCGAAGCAGCCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCACCCCCAGCTCTTCAGTC  148

Query    1  --------------------ATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGCCTGGCCCAGCCCCGA  54
                                ||||||||||..||.||||||||||||..|||||||||||..||.||||||.|.
Sbjct  149  TTCAGGCAGAGGAAGAACCGATGCTGGAACAGCGCTGCAGGGGCCCCACGGCCATGGGCCCAGCTCAGCCCTGG  222

Query   55  CTCCTTTCTGGGCCCTCCCAGGAGTCACCCCAGACCCTGGGGAAGGAGTCCCGCGGGCTGAGGCAACAAGGCAC  128
            |||.||||||||||||||||||||||..|||||.||     ||       |.|.|||.|||||.|.||.||||.
Sbjct  223  CTCTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCC-----GA-------CAGAGGGTTGAGGTACCAGGGCAA  284

Query  129  GTCAGTGGCCCAGTCTGGTGCCCAAGCCCCAGGCAGGGCCCATCGCTGTGCCCACTGTCGAAGGCACTTCCCTG  202
            .|||   ||.|||.|..|.|.||||.|||||||||.||.||||||.||||||||||||||.|.||.||||||.|
Sbjct  285  ATCA---GCTCAGCCAAGAGGCCAAACCCCAGGCAAGGTCCATCGTTGTGCCCACTGTCGGAAGCGCTTCCCGG  355

Query  203  GCTGGGTGGCTCTGTGGCTTCACACCCGCCGGTGCCAGGCCCGGCTGCCCTTGCCCTGCCCTGAGTGTGGCCGT  276
            ||||||||||.|||||||||||..|.||.||||||||||||||||||||..|||||||||.|||.||...||..
Sbjct  356  GCTGGGTGGCCCTGTGGCTTCATGCTCGGCGGTGCCAGGCCCGGCTGCCTCTGCCCTGCCATGAATGCAACCAG  429

Query  277  CGCTTTCGCCATGCCCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGCCACCCCAGACCTGGGCTTTGC  350
            |||||||||||.||||||||||||||.|||||.|..|||||.||||||.||||...|||.||||||||.||...
Sbjct  430  CGCTTTCGCCACGCCCCCTTCTTAGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCCGACCTGGGTTTCAT  503

Query  351  CTGCCACCTCTGTGGGCAGAGCTTCCGAGGCTGGGTGGCCCTGGTTCTGCATCTGCGGGCCCATTCAGCTGCAA  424
            |||||||||.||||||||.|||||||||||.|||||.|||||||||||||||||||||||.||.||||||.|||
Sbjct  504  CTGCCACCTATGTGGGCATAGCTTCCGAGGATGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCAGCTTCAA  577

Query  425  AGCGGCCCATCGCTTGTCCCAAATGCGAGAGACGCTTCTGGCGACGAAAGCAGCTTCGAGCTCATCTGCGGCGG  498
            |||||||||||.||||.||..|||||||.||||||||||||||||.|||.||||||||||||||||||||..||
Sbjct  578  AGCGGCCCATCACTTGCCCTGAATGCGACAGACGCTTCTGGCGACAAAAACAGCTTCGAGCTCATCTGCGAAGG  651

Query  499  TGCCACCCTCCCGCCCCGGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAGTGGGACCA  572
            |||||.||.||.|.|||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  652  TGCCAGCCCCCTGTCCCTGAGGCCCGGCCCTTCATATGCGGCAACTGTGGCCGGAGCTTTGCCCAATGGGACCA  725

Query  573  GCTAGTTGCCCACAAGCGGGTGCACGTAGCTGAGGCCCTGGAGGAGGCCGCAGCCAAGGCTCTGGGGCCCCGGC  646
            .||.||||..|||||||||||||||||.|||||||||.||||||||||.||||||||.||.|||||.||.| ||
Sbjct  726  ACTGGTTGTTCACAAGCGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAGCAGCCAAAGCCCTGGGTCCTC-GC  798

Query  647  CCA-GGGGCCGCCCCGCGGTGACCGCCCCCCGGCCCGGTGGAGATGCCGTCGACCGCCCCTTCCAGTGTGCCTG  719
            ||| |.||.||.||||      |.||.|||.||||.||||||||.||.||.|||||||||||||||||||||||
Sbjct  799  CCACGAGGACGTCCCG------CAGCTCCCAGGCCTGGTGGAGACGCTGTGGACCGCCCCTTCCAGTGTGCCTG  866

Query  720  TTGTGGCAAGCGCTTCCGGCACAAGCCCAACTTGATCGCTCACCGCCGCGTGCACACGGGCGAGCGGCCCCACC  793
            .||.||||||||.|||||.|||||||||||..|||||||.|||||||||||||||||.||.|||||.||.||||
Sbjct  867  CTGCGGCAAGCGTTTCCGCCACAAGCCCAATCTGATCGCCCACCGCCGCGTGCACACTGGTGAGCGACCACACC  940

Query  794  AGTGCCCCGAGTGCGGGAAGCGCTTTACCAATAAGCCCTATCTGACTTCGCACCGGCGCATCCACACCGGCGAG  867
            |||||||.||||||||||||||.||.|||||.||||||||.|||||.||||||||||||||.||.|||||||||
Sbjct  941  AGTGCCCAGAGTGCGGGAAGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGGCGCATACATACCGGCGAG  1014

Query  868  AAGCCCTACCCGTGCAAAGAGTGCGGCCGCCGCTTCCGGCACAAACCCAACCTGCTGTCTCACAGCAAGATTCA  941
            |||||||||||.||||..|||||.||||||||||||||.|||||||||||||||.||||.||||||||.||.||
Sbjct 1015  AAGCCCTACCCATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGCAAAATCCA  1088

Query  942  CAAGCGATCCGAGGGGTCGGCCCAGGCCGCCCCCGGCCCGGGGAGCCCCCAGCTGCCAGCCGGCCCCCAGGAGT  1015
            ||||||.|..||||..||.||.|||||.|||||...|||.|.|||.|.||||.|                    
Sbjct 1089  CAAGCGCTTGGAGGTCTCAGCGCAGGCTGCCCCACACCCCGAGAGTCACCAGAT--------------------  1142

Query 1016  CCGCGGCCGAGCCCACCCCGGCGGTACCTCTGAAACCGGCCCAGGAGCCGCCGCCAGGGG-CCCCGCCAGAGCA  1088
             .||.||.|||||.|      .||.||      ||||.||.|..|.|..||| ||.|||| ||||||       
Sbjct 1143  -TGCAGCAGAGCCTA------TGGCAC------AACCTGCACTTGGGGTGCC-CCTGGGGTCCCCGC-------  1195

Query 1089  CCCGCAGGACCCGATCGAAGCCCCC--CCCTCCCTCTACAGCTGCGACGACTGCGGCAGGAGCTTCCGGCTGGA  1160
                  ||||||.|.|..||.|.||  |.|| |||..|.||||||..||||||||||.|.||||||||||||||
Sbjct 1196  ------GGACCCCAGCTGAGGCACCTGCGCT-CCTGCATAGCTGCTCCGACTGCGGCCGCAGCTTCCGGCTGGA  1262

Query 1161  GCGCTTCCTGCGGGCCCACCAGCGGCAGCACACCGGGGAGCGGCCCTTCACCTGCGCCGAGTGCGGGAAGAACT  1234
            |||||||||||||...||||||.||||||||||.||||||.||||||||.|||||.|.|||||.||.|||||||
Sbjct 1263  GCGCTTCCTGCGGCTACACCAGAGGCAGCACACAGGGGAGAGGCCCTTCGCCTGCACAGAGTGTGGCAAGAACT  1336

Query 1235  TCGGCAAGAAGACGCACCTGGTGGCGCACTCGCGCGTGCACTCCGGCGAGCGGCCCTTCGCCTGCGAGGAGTGC  1308
            |||||||||||||||||||||||||||||||.|||||||||||||||||.||.||||||||||||||||||||.
Sbjct 1337  TCGGCAAGAAGACGCACCTGGTGGCGCACTCACGCGTGCACTCCGGCGAACGTCCCTTCGCCTGCGAGGAGTGT  1410

Query 1309  GGCCGCCGCTTCTCCCAGGGCAGCCATCTGGCGGCGCATCGGCGCGACCACGCCCCCGATCGGCCCTTCGTGTG  1382
            ||.|||||.|||||.|||||||||||.|||||.||.||.|||||.|||||.||.||.||..|||||||||||||
Sbjct 1411  GGTCGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGAGACCATGCACCAGAGAGGCCCTTCGTGTG  1484

Query 1383  TCCCGACTGCGGCAAGGCCTTCCGCCACAAACCCTACCTGGCGGCGCACCGGCGCATCCACACCGGCGAGAAGC  1456
            .||.||||||||||||||.|||||||||||.|||||||||||.||||||||.|||||||||||.||||||||.|
Sbjct 1485  CCCGGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCTGCGCACCGACGCATCCACACAGGCGAGAAAC  1558

Query 1457  CCTACGTCTGCCCCGACTGCGGCAAAGCCTTCAGCCAGAAGTCCAACCTGGTGTCGCACCGGCGCATCCACACG  1530
            ||||.||.||.||||||||.||||||||.|||||.||||||||||||||||||||.|||||||||||||||||.
Sbjct 1559  CCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGTCAGAAGTCCAACCTGGTGTCCCACCGGCGCATCCACACA  1632

Query 1531  GGCGAGCGGCCCTACGCCTGTCCCGACTGCGACCGCAGCTTCAGCCAGAAGTCCAACCTCATCACCCACCGCAA  1604
            ||||||||||||||||||||.||||||||.||.||.||||||||.|||||||||||.||.|||||.|||||.||
Sbjct 1633  GGCGAGCGGCCCTACGCCTGCCCCGACTGTGATCGTAGCTTCAGTCAGAAGTCCAATCTTATCACACACCGGAA  1706

Query 1605  GAGCCACATCCGGGACGGCGCCTTCTGCTGTGCCATCTGTGGCCAGACCTTCGACGACGAGGAGAGACTCCTGG  1678
            |||||||||||||||.|||||||||||.|||||||||||||||||||||||.||.||||||||..|||||.||.
Sbjct 1707  GAGCCACATCCGGGATGGCGCCTTCTGTTGTGCCATCTGTGGCCAGACCTTTGATGACGAGGACCGACTCTTGA  1780

Query 1679  CCCACCAGAAGAAGCACGATGTC  1701
            ..||||||||||||||.||||.|
Sbjct 1781  TGCACCAGAAGAAGCATGATGCC  1803