Construct: ORF ccsbBroadEn_08125

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017152.1_s300c1, BRDN0000387554
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
REPIN1 (29803)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29803 REPIN1 replication initiator 1 NM_001099696.2 100% 100%
2 human 29803 REPIN1 replication initiator 1 NM_001362746.2 100% 100%
3 human 29803 REPIN1 replication initiator 1 NM_001362747.2 100% 100%
4 human 29803 REPIN1 replication initiator 1 NM_013400.3 100% 100%
5 human 29803 REPIN1 replication initiator 1 XM_006715952.2 100% 100%
6 human 29803 REPIN1 replication initiator 1 XM_017012081.2 100% 100%
7 human 29803 REPIN1 replication initiator 1 XM_017012082.1 100% 100%
8 human 29803 REPIN1 replication initiator 1 XM_024446737.1 100% 100%
9 human 29803 REPIN1 replication initiator 1 XM_024446738.1 100% 100%
10 human 29803 REPIN1 replication initiator 1 XM_006715950.3 91% 91% 1_168del
11 human 29803 REPIN1 replication initiator 1 XM_006715951.2 91% 91% 1_168del
12 human 29803 REPIN1 replication initiator 1 NM_001099695.2 90.8% 90.8% 1_171del
13 human 29803 REPIN1 replication initiator 1 NM_001362745.2 90.8% 90.8% 1_171del
14 human 29803 REPIN1 replication initiator 1 XM_006715947.3 90.8% 90.8% 1_171del
15 human 29803 REPIN1 replication initiator 1 XM_006715949.3 90.8% 90.8% 1_171del
16 mouse 58887 Repin1 replication initiator 1 NM_001079905.1 81.2% 84.3% (many diffs)
17 mouse 58887 Repin1 replication initiator 1 NM_175099.3 81.2% 84.3% (many diffs)
18 mouse 58887 Repin1 replication initiator 1 NM_001079902.1 74.4% 77.2% (many diffs)
19 mouse 58887 Repin1 replication initiator 1 NM_001079901.1 74.3% 77% (many diffs)
20 mouse 58887 Repin1 replication initiator 1 NM_001079904.1 74.1% 76.8% (many diffs)
21 mouse 58887 Repin1 replication initiator 1 NM_001079903.1 73.9% 76.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1767
ORF length:
1701
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GGAACGTCGT TGCAGGGGCC CCCTGGCCAT GGGCCTGGCC CAGCCCCGAC
121TCCTTTCTGG GCCCTCCCAG GAGTCACCCC AGACCCTGGG GAAGGAGTCC CGCGGGCTGA
181GGCAACAAGG CACGTCAGTG GCCCAGTCTG GTGCCCAAGC CCCAGGCAGG GCCCATCGCT
241GTGCCCACTG TCGAAGGCAC TTCCCTGGCT GGGTGGCTCT GTGGCTTCAC ACCCGCCGGT
301GCCAGGCCCG GCTGCCCTTG CCCTGCCCTG AGTGTGGCCG TCGCTTTCGC CATGCCCCCT
361TCTTAGCACT GCACCGCCAG GTCCATGCTG CTGCCACCCC AGACCTGGGC TTTGCCTGCC
421ACCTCTGTGG GCAGAGCTTC CGAGGCTGGG TGGCCCTGGT TCTGCATCTG CGGGCCCATT
481CAGCTGCAAA GCGGCCCATC GCTTGTCCCA AATGCGAGAG ACGCTTCTGG CGACGAAAGC
541AGCTTCGAGC TCATCTGCGG CGGTGCCACC CTCCCGCCCC GGAGGCCCGG CCCTTCATAT
601GCGGCAACTG TGGCCGGAGC TTTGCCCAGT GGGACCAGCT AGTTGCCCAC AAGCGGGTGC
661ACGTAGCTGA GGCCCTGGAG GAGGCCGCAG CCAAGGCTCT GGGGCCCCGG CCCAGGGGCC
721GCCCCGCGGT GACCGCCCCC CGGCCCGGTG GAGATGCCGT CGACCGCCCC TTCCAGTGTG
781CCTGTTGTGG CAAGCGCTTC CGGCACAAGC CCAACTTGAT CGCTCACCGC CGCGTGCACA
841CGGGCGAGCG GCCCCACCAG TGCCCCGAGT GCGGGAAGCG CTTTACCAAT AAGCCCTATC
901TGACTTCGCA CCGGCGCATC CACACCGGCG AGAAGCCCTA CCCGTGCAAA GAGTGCGGCC
961GCCGCTTCCG GCACAAACCC AACCTGCTGT CTCACAGCAA GATTCACAAG CGATCCGAGG
1021GGTCGGCCCA GGCCGCCCCC GGCCCGGGGA GCCCCCAGCT GCCAGCCGGC CCCCAGGAGT
1081CcgcggcCGA GCCCACCCCG GCGGTACCTC TGAAACCGGC CCAGGAGCCG CCGCCAGGGG
1141CCCCGCCAGA GCACCCGCAG GACCCGATCG AAGCCCCCCC CTCCCTCTAC AGCTGCGACG
1201ACTGCGGCAG GAGCTTCCGG CTGGAGCGCT TCCTGCGGGC CCACCAGCGG CAGCACACCG
1261GGGAGCGGCC CTTCACCTGC GCCGAGTGCG GGAAGAACTT CGGCAAGAAG ACGCACCTGG
1321TGGCGCACTC GCGCGTGCAC TCCGGCGAGC GGCCCTTCGC CTGCGAGGAG TGCGGCCGCC
1381GCTTCTCCCA GGGCAGCCAT CTGGCGGCGC ATCGGCGCGA CCACGCCCCC GATCGGCCCT
1441TCGTGTGTCC CGACTGCGGC AAGGCCTTCC GCCACAAACC CTACCTGGCG GCGCACCGGC
1501GCATCCACAC CGGCGAGAAG CCCTACGTCT GCCCCGACTG CGGCAAAGCC TTCAGCCAGA
1561AGTCCAACCT GGTGTCGCAC CGGCGCATCC ACACGGGCGA GCGGCCCTAC GCCTGTCCCG
1621ACTGCGACCG CAGCTTCAGC CAGAAGTCCA ACCTCATCAC CCACCGCAAG AGCCACATCC
1681GGGACGGCGC CTTCTGCTGT GCCATCTGTG GCCAGACCTT CGACGACGAG GAGAGACTCC
1741TGGCCCACCA GAAGAAGCAC GATGTCTGCC CAACTTTCTT GTACAAAGTt ggcattataa
1801gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)