Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09069
Subject:
XM_017317781.1
Aligned Length:
3584
Identities:
1863
Gaps:
1489

Alignment

Query    1  ATGGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AACAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TCATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GATCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GAAGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGGCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGTCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCAT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  TTGGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGCTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GGGTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAA  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TTCCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  TTCCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCAC  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  ACTATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  GTTACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  AGTTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCG  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  GATCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGT  1184
                                                                           |||||||    
Sbjct    1  ---------------------------------------------------------------ATGAAAG----  7

Query 1185  CAATGAAGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGA  1258
                                       |||                ||||.||| ||                 
Sbjct    8  ---------------------------TCT----------------CCTCTTCT-CA-----------------  20

Query 1259  TCTCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACTCT  1332
                |||||||||.||.||||..|||.||||||||||||||||.||.|||||||||||||||||||||||.|||
Sbjct   21  ----AGACCACTCGAGGTGGATGCGACTGGTTGATATCAACCTCGTGCGGTGCCATGCTTTGAAGCTGGATTCT  90

Query 1333  TTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACCACCCAA  1406
            ||||||||||||.||||||||||.||||||||.||.||||||||.|||||.||||||||.|||||.||||||||
Sbjct   91  TTTGGCCAGTTTGTTGAATTATTGCCCAGCCTGGAATTTATTTCTCTGGACCAGATGTTCCGTGAGCCACCCAA  164

Query 1407  GGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAACCAGAACT  1480
            |||.||||||||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||||||||.|
Sbjct  165  GGGCTGTGCTCGAGTTGGTCTGAGTGCAGGAACTGGAATTGGGGTTTCCTCAGCGCTTGTCAGCAACCAGAATT  238

Query 1481  CCAACAATGAC---GATAATAATGC-CCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATCCAGA  1550
            |||||||||||   ||.|||||||| ||| ||||||||.||||||.||||.||.||||||||||||||.|||||
Sbjct  239  CCAACAATGACAATGACAATAATGCTCCA-AATAACAACGCCAACCTCCATGATAACAATCACCATCACCCAGA  311

Query 1551  TGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGA-GCAGCAGTTTGCAGCTGACGCATTA  1623
            |||.||.||.||.||.|||||||||||.|.|||.||.||..||||||| ||| ||.||||||||.||.||.||.
Sbjct  312  TGATTCGGATGACGACAATGACTTTCGTCCAGACCTACAAGCAGGAGAGGCA-CAATTTGCAGCCGATGCGTTG  384

Query 1624  AATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCACAG  1697
            |||||||||||||||||.|||||.|||||||||||..||||.|||||||||||||||..||..||||||||||.
Sbjct  385  AATGAGATGGAAGACATGGTCCAGGAAGATGGAGAACTGGTAGCCGAGAGTGGAAATGGTATGCCAGCTCACAA  458

Query 1698  CCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAACCAA  1771
            .|.||.|.||.||||||||||||.|||||||||||||||||||||.||||||||.||.||.||.||||||||.|
Sbjct  459  TCGGGAAGTTCTTCCTGTGGATGCTGATGAGGAACAAGCAGGACCTAGTGGTCTACAACGCGTGGTAAAACCTA  532

Query 1772  CCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATTCCT  1845
            |..|||||.|||.|||.|||||||||||.||||||||||||||||||.||||||||||||||||||||..||||
Sbjct  533  CACCAATTGCTGATCACGATTCAGAGAGCGATGATGAAGAAGATAGTTTAGAACTCCAAGAAGTCTGGGCTCCT  606

Query 1846  AAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAATTGTCAGT  1919
            |||||.||.||.|||||||||||.||.||.||||||||.||||||||.||||..||||||||.|||..|.||||
Sbjct  607  AAGAATGGCACCCGGCGTTACTCAGAGCGGGAAGAAAAGACTGGAGACTCAGGACAGTCCAGGGAAACGGCAGT  680

Query 1920  AAGTGGAAAAGGCAAGACTCCACTTCGAAAGAGGT---ACAACTCCCATCAGATGGGCCAGTCGAAGCAGTTTC  1990
            ||||||.||||||||||||||||||||||||||||   ||||||||||.||||.|||||||.||||||.|||||
Sbjct  681  AAGTGGGAAAGGCAAGACTCCACTTCGAAAGAGGTGCAACAACTCCCACCAGACGGGCCAGGCGAAGCCGTTTC  754

Query 1991  CCCTCGAGGAAAGCAGCTGTGAGAAAGGCTGTCAGGTCACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCT  2064
            ||||.|||||.||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  755  CCCTGGAGGAGAGCAGCTGTGAGAAAGGCTGTCAGGTGACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCT  828

Query 2065  AGGGATATTCCTGAAAAGAAAAAAAACAAGGATGTTTATCCCAGCTGCAGCAGCACCA------------CCGC  2126
            ||||||.||.||||||||||||||..|||||||||.|||||||||||||||||||.||            ||||
Sbjct  829  AGGGATGTTTCTGAAAAGAAAAAATCCAAGGATGTCTATCCCAGCTGCAGCAGCAGCAGCAGCAGCACAGCCGC  902

Query 2127  CAGCACAGTGGGAAACTCCAGCTCACACAACACTGCTTCTCAAAGCCCCGACTTTGTAAGGACGGTGAACAGCG  2200
            ||||||||.|||||||.|||||||||.||.|||||||||.||.|||||.|||||||.|||||||||||.||||.
Sbjct  903  CAGCACAGCGGGAAACGCCAGCTCACCCAGCACTGCTTCCCAGAGCCCGGACTTTGCAAGGACGGTGACCAGCA  976

Query 2201  GCGGCTCTTCCGAGCCTAGCCCTACAGAAGTGGATGTGTCCAGGCAGTGTGCCTGCTCCCCCGGTGGGTCAGAG  2274
            ||||||||||||||||.||||||.|||||||.|||||.|||||||||||||.|||||||||.||||||||||||
Sbjct  977  GCGGCTCTTCCGAGCCGAGCCCTCCAGAAGTAGATGTATCCAGGCAGTGTGTCTGCTCCCCTGGTGGGTCAGAG  1050

Query 2275  GACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGTCACAGGCCCCAGGA  2348
            |||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||.||||||||||||
Sbjct 1051  GACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGCTCTGTCTGCCCCAGATGCTGCTGTCTCAGGCCCCAGGA  1124

Query 2349  ATCCCAAAGGAGAACTAGCAGGTGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCC  2422
            .||.||||||||||||.|||||||||||||||||||.||||||||||||||||||||||||||||||||||||.
Sbjct 1125  GTCTCAAAGGAGAACTGGCAGGTGTTCTGATGAGGAGCGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCG  1198

Query 2423  CGGAT---------------------------------------------------------------------  2427
            |||||                                                                     
Sbjct 1199  CGGATGGTACGAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAG  1272

Query 2428  --------------------------------------------------------------------------  2427
                                                                                      
Sbjct 1273  AGGACTAATGGGAGTGGCTGTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGT  1346

Query 2428  --------------------------------------------------------------------------  2427
                                                                                      
Sbjct 1347  GCAGTCTAATGAAGACTATCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACCGCTGATAT  1420

Query 2428  --------GAAGTAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGT  2493
                    |||||.|||||||||||||||.|.||.|||||||||||.|||||.||.||||||||.||.||.||.
Sbjct 1421  CTGAGTCAGAAGTTGCCAAAACAAAGCCATGCCATGCCATGAAACGAAAGCGAACTGCAGATAAGTCTACCAGC  1494

Query 2494  ACAAGTGATCCTGTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCAC  2567
            ||.|||||.||||||||.||.||||||||.||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct 1495  ACCAGTGACCCTGTGATTGAAGATGACCACGTACAGGTTCTTGTATTAAAATCCAAAAATCTTGTTGGAGTCAC  1568

Query 2568  TATGACCAATTGTGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCAGGT  2641
            .|||||||||||||||||||||||||||||.||.||||||||.||.||||||||||||||||||||||||||||
Sbjct 1569  AATGACCAATTGTGGAATCACAGATCTAGTACTGAAAGACTGCCCCAAGATGATGTTCATCCATGCTACCAGGT  1642

Query 2642  GCAGGGTACTAAAACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAA  2715
            ||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643  GCAGGGTACTGAAGCATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAA  1716

Query 2716  CTGAACATGGATCAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCC  2789
            ||.||.|||||.||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||.|||||.|||||
Sbjct 1717  CTAAATATGGACCAGGTACTAGACCAAATACTGAGGATGCCTCCGGAGAGGAACCGGATCATCTACCTGCGCCC  1790

Query 2790  AATGCAGCAGGTGGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTA  2863
            ||||||||||||.|||||.||||||.|||||||||||||.||.||.||.||||||||||||||||||||.||.|
Sbjct 1791  AATGCAGCAGGTAGACACACTAACTCTGGAGCAGAAGCTCTTCAGCGGGCCCTACCCCTATCACATCTGCATCA  1864

Query 2864  TCCATGAATTCAGTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAAC  2937
            ||||.||.|||||.||.||||||||.||.|||||.|||||||||||.||||..|||||||||||.|||||.|||
Sbjct 1865  TCCACGAGTTCAGCAATCCTCCCAACGTGCGGAACAAGGTGCGCATCCGCAATTGGATGGACACGATAGCCAAC  1938

Query 2938  ATCAATCAAGAGCTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCC  3011
            |||||||||||||||||||||||.||||||||||..|||||||||||.|.||||||.||.||||||||.|||||
Sbjct 1939  ATCAATCAAGAGCTCATTAAATACGAATTCTTCCTGGAAGCCACTCGGACTGAAGAGGATTTAAAGAAGTACCC  2012

Query 3012  CAAGTACCCCTGGGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTG  3085
            .|||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||.||||||||||||||.|
Sbjct 2013  TAAGTATCCCTGGGGGAGAGAAATCTACACTTTAGAGGGTGTTGTAGATGGAGCGCCGTATTCCATGATTTCCG  2086

Query 3086  ACTTCCCTTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAA  3159
            ||||||||||||||||||||.|.||..|.|||||||||||||||||.||..||||.||.||||||||.||||||
Sbjct 2087  ACTTCCCTTGGCTGAGGTCACTGCGGACCGCAGAGCCCAACAGCTTTGCCAGATATGATTTTGAAGATGATGAA  2160

Query 3160  GAAAGCACTATCTATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGA  3233
            ||.|||||.||||||||||||.||||.|||||.|||.|||||||||||||.||||||||.||||||||||||||
Sbjct 2161  GAGAGCACCATCTATGCTCCTCGAAGAAAAGGGCAGTTGTCTGCAGACATTTGTATGGAGACAATAGGAGAGGA  2234

Query 3234  AATTTCAGAGATGCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATG  3307
            .||.|||||||||||.||||||||||.|||..||||||||||||||||.||.||||||||||||||.|||||||
Sbjct 2235  GATCTCAGAGATGCGCCAGATGAAGAGGGGCATATTTCAGCGAGTAGTAGCGATTTTTATCCACTACTGTGATG  2308

Query 3308  TCAATGGAGAGCCAGTTGAAGATGACTACATT  3339
            ||||||||||||||||||||||.|||||||||
Sbjct 2309  TCAATGGAGAGCCAGTTGAAGACGACTACATT  2340

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