Construct: ORF ccsbBroadEn_09069
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007750.1_s300c1, BRDN0000390653
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FBXO38 (81545)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81545 | FBXO38 | F-box protein 38 | NM_030793.5 | 99.9% | 99.9% | 409G>T |
| 2 | human | 81545 | FBXO38 | F-box protein 38 | XM_006714797.2 | 97% | 97% | 409G>T;2428_2526del |
| 3 | human | 81545 | FBXO38 | F-box protein 38 | NM_205836.3 | 93.6% | 93.6% | 409G>T;2428_2652del |
| 4 | human | 81545 | FBXO38 | F-box protein 38 | XM_024446223.1 | 93.6% | 93.6% | 409G>T;2428_2652del |
| 5 | human | 81545 | FBXO38 | F-box protein 38 | NM_001271723.1 | 84.6% | 84.6% | 409G>T;1917_1918ins510 |
| 6 | human | 81545 | FBXO38 | F-box protein 38 | XR_001742284.1 | 74.1% | (many diffs) | |
| 7 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009901.2 | 67.1% | 67.1% | 0_1ins1098 |
| 8 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009902.2 | 63.2% | 62.7% | (many diffs) |
| 9 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009899.1 | 62.8% | 62.8% | 0_1ins1098;1330_1554del |
| 10 | human | 81545 | FBXO38 | F-box protein 38 | XM_011537684.3 | 59.2% | 58.7% | (many diffs) |
| 11 | human | 81545 | FBXO38 | F-box protein 38 | XM_017009900.2 | 59.2% | 58.7% | (many diffs) |
| 12 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525502.3 | 88.3% | 93.6% | (many diffs) |
| 13 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525501.3 | 88.3% | 93.5% | (many diffs) |
| 14 | mouse | 107035 | Fbxo38 | F-box protein 38 | NM_134136.3 | 82.8% | 87.7% | (many diffs) |
| 15 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525497.3 | 82.7% | 87.6% | (many diffs) |
| 16 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525498.1 | 82.7% | 87.6% | (many diffs) |
| 17 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_006525499.3 | 82.7% | 87.6% | (many diffs) |
| 18 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_011246802.2 | 64.7% | 67.3% | (many diffs) |
| 19 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_017317781.1 | 51.9% | 53.4% | (many diffs) |
| 20 | mouse | 107035 | Fbxo38 | F-box protein 38 | XM_017317780.1 | 51.9% | 53.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3405
- ORF length:
- 3339
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GCCACGAAAG AAAAGTGTGA AAACATGTAT CATGAATAAT GAAATTCCAG 121 AAGAAATGAC AGCAGATGAA ACAAAGGACT ATATGAATCA ACTTTCACAT GAAGTACTTT 181 GCCATATTTT TAGGTACCTC CCTCTGCAGG ATATCATGTG TATGGAATGT CTTTCCCGGA 241 AGCTAAAGGA AGCAGTGACC CTATATCTGC GAGTTGTGAG AGTTGTAGAT CTCTGTGCAG 301 GGCGGTGGTG GGAATACATG CCAAGTGGCT TTACAGATGC CAGTTTTCTA ACACTATTAA 361 AGAAGATGCC AGATGTTGAA CAGCTATATG GCCTTCACCC TCGATACCTT GAGAGGCGAA 421 GAGTAAGGGG CCATGAGGCT TTTAGCATTC CAGGAGTCCT AGAAGCTTTG CAGTCATGCC 481 CAAACTTAGT GGGTGTGGAA ACTTCTCATT TGGAGTTGGT AGAATCCATT TGGACATATA 541 TGCCCCATGT TCATATTTTG GGGAAATTTC GTAATCGTAA TGGAGCTTTT CCAATTCCTC 601 CTGAAAATAA ACTGAAAATT CCTATAGGAG CCAAAATTCA AACTTTACAT TTAGTTGGGG 661 TGAATGTTCC TGAAATTCCT TGTATCCCAA TGCTAAGGCA CCTTTATATG AAGTGGGTAA 721 GACTCACTAA ACCACAGCCA TTTAAAGACT TCCTTTGTAT CAGCTTAAGA ACTTTCGTCA 781 TGAGGAACTG TGCAGGACCC ACAAATTCCT TGAAATATGT CCCTTTAGTA ACAGGCTTAG 841 CCTCTGCCCG AAACTTGGAA CACTTAGAAA TGGTTCGAGT TCCTTTCCTT GGAGGTCTTA 901 TCCAACATGT TGTTGAAGAC AGTTGGAGAT CAGGTGGTTT TAGAAATTTG CACACTATTG 961 TTCTGGGAGC TTGCAAAAAT GCTCTTGAAG TAGATCTTGG TTACCTCATC ATTACTGCTG 1021 CCCGTAGGTT ACATGAAGTT CGGATCCAGC CTTCCCTAAC CAAAGATGGT GTCTTTTCTG 1081 CCCTAAAGAT GGCAGAGTTG GAGTTTCCCC AGTTTGAAAC CCTTCATCTA GGATATGTAG 1141 ATGAGTTTTT GCTACAGAGC AGAATGGCTA ATGCGGATCT GGTGAAGTAT GGTTTGGCTG 1201 ATGTGGTAGA AAATCCTGGT ATCATCACTG ATATAGGGAT GAAAGCAGTC AATGAAGTTT 1261 TTTCCTGTAT CAAATATCTG GCAATTTACA ATTGCCCTCA TCTACACAAC CCATACAATT 1321 GGATCTCAGA CCACTCAAGA TGGACTCGAT TGGTTGATAT CAACCTAGTA CGGTGCCATG 1381 CTTTGAAGCT GGACTCTTTT GGCCAGTTTA TTGAATTATT ACCCAGCCTA GAGTTTATTT 1441 CACTGGATCA GATGTTTCGT GAACCACCCA AGGGTTGTGC TCGAGTTGGT CTGAGTGCAG 1501 GCACAGGAAT TGGTGTTTCA TCAGCTCTTG TTAGCAACCA GAACTCCAAC AATGACGATA 1561 ATAATGCCCA GAATAACAAT GCCAACATCC ACGACAACAA TCACCATCAT CCAGATGACT 1621 CAGACGAGGA GAATGACTTT CGGCAAGATC TGCAGCCAGG AGAGCAGCAG TTTGCAGCTG 1681 ACGCATTAAA TGAGATGGAA GACATCGTCC AAGAAGATGG AGAGGTGGTG GCCGAGAGTG 1741 GAAATAATAC TCCAGCTCAC AGCCAGGCAA TTATTCCTGT GGATGTTGAT GAGGAACAAG 1801 CAGGACCCAG TGGTCTTCAG CGTGTAGTAA AACCAACCTC AATTACTGTT CATGATTCAG 1861 AGAGTGATGA TGAAGAAGAT AGTCTAGAAC TCCAAGAAGT CTGGATTCCT AAGAACGGTA 1921 CTCGGCGTTA CTCTGAACGT GAAGAAAAAA CTGGAGAGTC AGTGCAGTCC AGAGAATTGT 1981 CAGTAAGTGG AAAAGGCAAG ACTCCACTTC GAAAGAGGTA CAACTCCCAT CAGATGGGCC 2041 AGTCGAAGCA GTTTCCCCTC GAGGAAAGCA GCTGTGAGAA AGGCTGTCAG GTCACCAGTG 2101 AGCAGATCAA AGCCGATATG AAAGCAGCTA GGGATATTCC TGAAAAGAAA AAAAACAAGG 2161 ATGTTTATCC CAGCTGCAGC AGCACCACCG CCAGCACAGT GGGAAACTCC AGCTCACACA 2221 ACACTGCTTC TCAAAGCCCC GACTTTGTAA GGACGGTGAA CAGCGGCGGC TCTTCCGAGC 2281 CTAGCCCTAC AGAAGTGGAT GTGTCCAGGC AGTGTGCCTG CTCCCCCGGT GGGTCAGAGG 2341 ACTCTGAGGC CATGGAGGAG GGAGATGCAG AGAGTTCTGT CTGCCCCAGA TGCTGCTGTC 2401 ACAGGCCCCA GGAATCCCAA AGGAGAACTA GCAGGTGTTC TGATGAGGAA CGTCCTTCAA 2461 CCAGCCGAGC CTGTGTTGTG AATGGCCCGG ATGAAGTAGC CAAAACAAAG CCACGTCACG 2521 CCATGAAACG GAAGCGGACA GCAGATAAAT CCACTAGTAC AAGTGATCCT GTGATCGAGG 2581 ATGACCATGT GCAGGTTCTT GTATTAAAAT CCAAGAATCT TGTTGGAGTC ACTATGACCA 2641 ATTGTGGAAT CACAGATCTA GTGCTAAAAG ACTGTCCAAA GATGATGTTC ATCCATGCTA 2701 CCAGGTGCAG GGTACTAAAA CATTTAAAGG TAGAAAATGC ACCAATTGTA AACCGATTTG 2761 ACTATGCACA GTGCAAGAAA CTGAACATGG ATCAGGTACT AGACCAGATA CTAAGAATGC 2821 CACCCGAGAG AAACCGCATC ATATACCTAC GCCCAATGCA GCAGGTGGAC ACTCTAACTT 2881 TGGAGCAGAA GCTATTTAGT GGTCCCTACC CCTATCACAT CTGTATTATC CATGAATTCA 2941 GTAACCCTCC CAATGTCCGG AATAAGGTGC GCATTCGCAG CTGGATGGAC ACTATAGCAA 3001 ACATCAATCA AGAGCTCATT AAATATGAAT TCTTCCCTGA AGCCACTCGA AGTGAAGAAG 3061 ACTTAAAGAA ATACCCCAAG TACCCCTGGG GGAGAGAAAT CTATACTTTA GAAGGTGTTG 3121 TGGATGGAGC TCCATATTCC ATGATTTCTG ACTTCCCTTG GCTGAGGTCA TTACGAGCTG 3181 CAGAGCCCAA CAGCTTCGCT CGATACGACT TTGAAGACGA TGAAGAAAGC ACTATCTATG 3241 CTCCTAGAAG GAAAGGACAG CTGTCTGCAG ACATCTGTAT GGAAACAATA GGAGAGGAAA 3301 TTTCAGAGAT GCGTCAGATG AAGAAGGGTG TATTTCAGCG AGTAGTGGCA ATTTTTATCC 3361 ACTATTGTGA TGTCAATGGA GAGCCAGTTG AAGATGACTA CATTTACCCA ACTTTCTTGT 3421 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c