Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11159
- Subject:
- XR_001738905.2
- Aligned Length:
- 5281
- Identities:
- 801
- Gaps:
- 4480
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGCTCCCCGGGGCCCCCTGCCCGGCCGGGCGCTGACAGCAAGGGCGGGGGTCCCTGCCGCCGCCTTGTCTCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCAGGGTCCGGCTGGGGTAGCGGAGCCCCCAGTGCGGCCATGGACCGGCCCCTGTCGTCGTCGGCGGAGGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCTGGCAAGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCGGAGACGGAGGATCTGTCCACAGAAGCGACGACGCAGGACGAGGAGGAGGACGAGGAGGAGGACCTCCCCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGCGCAGCTGCCGGCAGCGGGGGGAAGAGGAAACGTGCCCAACGAGAAGATCGCGATATGGCTCAAGGACTGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTACACCTTTGGGAGCCTCACTGGATGAACAAAGCAGTAGTACACTCAAGGGTGTGCTTGTGAGAAATGGAGGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTTTTGAAGATGATTTGTCATTGGGAGCTGAAGCCAACCACCTCCATGAAAGTGATGCTCAAATTGAAAACTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAATAATATCTTGGCCAAAGAGAGAAGATTACAGTTTCATCAGAAAGGGAGAAGTATGAATTCCACTGGATCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAAAAGTAGTGGGACAGTTTCAAGTGTTTCAGAATTGTTGGAACTTTATGAGGAAGATCCTGAAGAAATTCTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TATAATCTTGGATTTGGACGTGATGAACCAGATATTGCTTCTAAAATTCCTTCCAGATTTTTTAATTCATCATC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGCCAAAGGGATAGATATTAAAGTATTTTTGAGTGCTCAGATGCAACGGATGGAAGTAGAAAACCCAAATT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGCTTTAACAAGCCGTTTTCGTCAAATTGAAGTGCTTACTACTGTGGCCAATGCGTTTTCTTCTTTATATTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAAGTCTCCGGGACGCCCCTGCAGAGAATTGGAAGTATGTCCTCAGTGACCTCTAACAAGGAGACAGACCCACC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCACCTTTAACTCGAAGTAACACTGCAAATCGTTTAATGAAAACACTCTCAAAACTGAATTTATGTGTTGATA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAACAGAGAAAGGAGAAAGTAGTAGTCCTTCTCCATCAGCTGAAAAAGGAAAGATTCTAAATGTTTCAGTGATT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAAGAAAGTGGCAATAAAAACGATCAAAAGTCTCAAAAAATTATGAAGAAGAAAGAGTCATCTTCTATGTTGGC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TACAGTTAAAGAAGAAGTCTCTGGTAGTTCAGCAGCTGTTACGGAGAATGCTGATAGTGATAGAATTTCTGATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAGCAAATAGTAATTTTAACCAAGGAACTGAAAATGAACAAAGTAAAGAAACTCAAAGTCATGAGAGTAAACTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGTGAGGAATCTGGTATTGTAGAATCCAAATTAGATAGTGATTTCAACATATCCAGCCACAGTGAGCTGGAAAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCAGTGAGCTGAAAAGTGTCCATATATCCACACCTGAAAAAGAGCCTTGTGCACCACTGACAATACCATCCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TAAGAAATATAATGACACAGCAGAAGGACTCCTTCGAAATGGAAGAGGTTCAAAGTACGGAGGGAGAAGCTCCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CATGTTCCAGCCACTTACCAGCTAGGTCTTACGAAGTCGAAAAGAGATCATCTGTTACGTACTGCAAGTCAGCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCCGATAGCAGTGGTTTTGCTGAAGATTCTACAGACTGCCTATCCCTTAATCATCTTCAGGTTCAGGAGTCCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGCAGGCTATGGGGAGTAGTGCTGATAGTTGTGACAGTGAGACAACAGTTACGTCACTTGGTGAAGACCTTGCC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ACACCAACAGCACAAGACCAGCCTTATTTTAATGAATCAGAGGAGGAGTCTCTTGTCCCTCTTCAGAAGGGACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGAGAAGGCAGCAGCAGTTGCAGACAAAAGAAAATCAGGTAGCCAGGATTTCCCTCAGTGCAACACCATTGAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATACAGGAACTAAACAGTCCACCTGTAGTCCAGGGGATCATATCATTGAAATTACTGAAGTGGAAGAGGATTTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTCCAGCAGAGACAGTAGAGCTACTGAGGGAAGCAAGTGCTGAAAGTGATGTGGGTAAAAGCAGTGAAAGTGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTTACTCAGTATACCACACACCATATTCTGAAATCATTGGCTTCTATTGAAGCTAAATGCAGTGATATGAGCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTGAAAATACAACTGGGCCTCCCTCTTCCATGGACAGAGTTAATACAGCTTTGCAAAGAGCTCAAATGAAGGTT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGCAGTCTGTCTAATCAAAGGATGGGGCGTAGCCTGCTAAAATCAAAAGATTTGTTAAAACAAAGGTACTTATT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGCAAAAGCTGGCTATCCTCTAAGAAGGTCTCAGTCTTTACCAACCACCTTATTGAGCCCAGTAAGGGTTGTGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCTCTGTCAATGTTCGATTATCTCCAGGAAAAGAGACCAGATGCAGCCCACCTTCCTTCACCTATAAGTACACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCTGAAGAGGAGCAGGAATTGGAAAAGCGGGTGATGGAACATGATGGTCAGTCTTTAGTTAAATCGACCATTTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CATCTCTCCATCATCTGTGAAGAAAGAAGAAGCCCCCCAGAGTGAGGCGCCGCGGGTGGAGGAATGCCATCATG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAAGGACTCCTACCTGTTCACGGCTTGCTCCACCACCAATGTCTCAGTCTACCTGTTCCCTTCATTCCATCCAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCTGAGTGGCAAGAAAGGCCCCTGTGTGAGCACACAAGAACTCTGAGCACTCACAGTGTTCCCAACATATCAGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGCTACTTGTAGTGCCTTCGCTTCCCCTTTCGGGTGTCCTTACTCACATAGACATGCCACCTACCCTTACCGAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGTGCTCTGTGAATCCTCCTTCAGCCATAGAAATGCAGTTGCGAAGAGTATTACATGATATTAGAAACTCACTG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CAGAATCTTTCACAGGGAGAAGCTGTAACTAACCCTGATCAAAGTCGATTTCTCTGCTCACAAGTCTGTCTCCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTCCAAGAGGAGAGATTTTTCTCGTTAAGTATCCTCCCATTTTTAGTCTATCATCCACTGTCTTTGTTTTAGTC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TAGAATCTTTTGTCATTTCTATTATTAAAAAATCTTCCCTCTTAAAGTTCTTTCTCTCTTTCTCTCTGCTATTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GAACATGTTGACTACCTTTTCCTTTTCCAAGTTTTCTCCCTGTTGGCTTCTGTGGCACCACGTTCTCCTGGTTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGCTCGTAGCTCTCTGACTAAGCTTTCCCCTTCACCTACTGACCCTCGATGCTGTGCACAGAGTTAGTCTACTT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCACTGGACTCAAAGACTGGAACTACTCCAGACCAGAAAATAACAAATCAGTACCCTATGATGAGAGGACCTGA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCCTGCTGCTGCTCCATATAGTACTCAGAAATCATCTGTTCTACCTCTTTATGAAAATACTTTTCAGGAGCTCC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AGGTAATGAGGCGGAGCCTGAATTTGTTTAGAACACAAATGATGGATTTAGAATTGGCAATGCTGCGTCAGCAA 3478
Query 1 ------------------ATGACTGAGGAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGT 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 ACCATGGTTTATCATCATATGACTGAGGAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGT 3552
Query 57 CCGAATGGAACTTCAGGACCTGGAACTGCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTG 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 CCGAATGGAACTTCAGGACCTGGAACTGCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTG 3626
Query 131 TGCGCATGCCTTCACCCTTCCGCTCCTCCGCACTCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCA 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 TGCGCATGCCTTCACCCTTCCGCTCCTCCGCACTCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCA 3700
Query 205 TGCCCTTCTCCATTGAATGTAATGGAACCAGTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATT 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 TGCCCTTCTCCATTGAATGTAATGGAACCAGTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATT 3774
Query 279 GGGCCTGGGACTTGGAGAAATGGGATTTGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 GGGCCTGGGACTTGGAGAAATGGGATTTGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAA 3848
Query 353 CATCAGAATCATCTTCTGTATGTTCTGGTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 CATCAGAATCATCTTCTGTATGTTCTGGTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCA 3922
Query 427 GTGGGCAAATCCAAAACCCCATTAGTGGCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 GTGGGCAAATCCAAAACCCCATTAGTGGCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGC 3996
Query 501 TCCTTCTAGAACAGGCTCTGTGCAGACACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 TCCTTCTAGAACAGGCTCTGTGCAGACACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAG 4070
Query 575 CCCCAGAAGTTGTAGGACCTAAATCTGAAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 CCCCAGAAGTTGTAGGACCTAAATCTGAAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAG 4144
Query 649 GAAATGCATAAAAATGTGGAGCAAGATGAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 GAAATGCATAAAAATGTGGAGCAAGATGAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGA 4218
Query 723 AATCAGACGGGAAATTGTAAGTGGACTTTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 AATCAGACGGGAAATTGTAAGTGGACTTTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATT 4292
Query 797 ATCAT--------------------------------------------------------------------- 801
|||||
Sbjct 4293 ATCATTAAACAGAAATTATAGGTTGGCATGGATCCTATTAGCTGTGTAATACTGGAATTATCAATGATATGCAC 4366
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4367 TGGTGGAGGTGTTATTTGTGCTTTAGAAGATACTTGCTGTTGAGCTGGGCTACTGTATACAGTGTACAATGTGT 4440
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4441 ATTTCTTCAACCATATATTTTAAAAAGACGTACATAGAAACTTAGGCACTTTGCTATTTCTTTTCTAAACTATC 4514
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4515 AAAAACTCTAGCAGTTTGAAAAGCCTAATATTTATTTGTATGTCAGTATTTTTCATTTGATTCCCTATTAGAAT 4588
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4589 TAATTTTAAAACTTGAAGACTTCCAGACTTATCCAACTTATAAATAACATATTTCTTCAGACTAACATCTTAAA 4662
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4663 ACACTGACCTCTATGAGGTATTTACTGTGCAATAACTGATTCATTTTTTTCAGAGCTTGAAGCATCCAATGATT 4736
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4737 TTTCCCTCCACTGCTGTTAATTAATGTCACTTCCAAGAAGAAAAACTGTTCTGTTGTAAAAAATATAATTGCTC 4810
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4811 TTAATTCTTGGGGAGGTTACTAATAGCAGTAGGATAGAATTTTATGAGGTTACCTACAACTACTTAATGTACTT 4884
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4885 ACACTGTAAGCCTTGTTGCTTTACCCAAGACAAATGTAATTTTATCATTGCTTATGTAGTATTTTTCTTTTGGA 4958
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4959 AATGTGCCTTATGTTAAACACTATGTACTTTTACTTTTTGCATTGTCCAGACTTCTTTATTAGATGGAGATGTT 5032
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5033 TCTTTTTCTGTCTTCTAGACTAAATAGAGTATCATCCAAATAATGGGGCCTATGACTTGAATGAATAGAAATGA 5106
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5107 ATAAGCTGGTGTTTGTTTTTTCAAAATGGAAGTAATTTAGATTTGTTCTCCTCATACATAAAATGATTTTAGTT 5180
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5181 CAGTTTTAACCAGTGAAAACTTTGTTTTTATGAAAAAAAAGGAAAATGGTTTCCCATTTGGTTTTATATGTGTT 5254
Query 802 --------------------------- 801
Sbjct 5255 AAATAAATGTGTAAAGTAACCACCAAA 5281
