Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11434
- Subject:
- NM_001286610.1
- Aligned Length:
- 1985
- Identities:
- 934
- Gaps:
- 919
Alignment
Query 1 ATGTCCCTCGGTCAGTCGGCCTGTCTGTTCCTCTCTATAGCTCGGTCAAGGAGTGTGATGACTGGCGAGCAGAT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGCTGCCTTCCATCCATCGTCCACCCCCAACCCGCTGGAGAGGCCCATCAAGATGGGCTGGCTGAAGAAGCAGA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 GGTCCATCGTGAAGAACTGGCAGCAGAGGTACTTTGTGCTGAGGGCGCAGCAGCTCTACTACTACAAGGATGAA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GAGGACACGAAGCCCCAGGGCTGCATGTATCTACCAGGATGTACAATCAAGGAGATCGCCACAAACCCAGAAGA 296
||||||||.|||||..|||||.||||.||.||.|||||||||||.|||||
Sbjct 1 ------------------------ATGTATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAAACCCCGAAGA 50
Query 297 AGCTGGGAAGTTTGTCTTTGAAATCATTCCAGCCTCATGGGACCAGAATCGCATGGGACAGGACTCCTATGTCC 370
|||||||||.||||||||||||.|.||||||||||||.|.||||||||.|||||.|||||.||||||||.||||
Sbjct 51 AGCTGGGAAATTTGTCTTTGAAGTTATTCCAGCCTCAAGTGACCAGAACCGCATTGGACAAGACTCCTACGTCC 124
Query 371 TCATGGCCAGCTCTCAGGCGGAGATGGAGGAGTGGGTTAAATTCCTCAGGAGAGTTGCTGGCACACCCTGTGGA 444
|||||||||||||.||||..||||||||||||||||||||.|||||||||||||||||||||||.||||.||||
Sbjct 125 TCATGGCCAGCTCCCAGGTAGAGATGGAGGAGTGGGTTAAGTTCCTCAGGAGAGTTGCTGGCACGCCCTCTGGA 198
Query 445 GCAGTGTTTGGCCAGCGCTTGGATGAGACTGTGGCCTATGAACAGAAATTCGGCCCCCATCTGGTGCCCATCCT 518
||.||||||||||||||..||||||||||||||||||||||.|||||.||.|||||.||.||||||||||||.|
Sbjct 199 GCGGTGTTTGGCCAGCGTCTGGATGAGACTGTGGCCTATGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTT 272
Query 519 GGTGGAGAAATGTGCAGAGTTCATCCTGGAGCACGGCCGGAATGAAGAGGGCATCTTCCGTCTGCCTGGGCAGG 592
|||||||||.||.||.||||||||||||||.||.||...||.||||||||||||||||||.|||||.|||||||
Sbjct 273 GGTGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCGGGCAGG 346
Query 593 ACAACCTGGTGAAGCAGCTGAGAGACGCTTTTGATGCTGGGGAGCGGCCCTCCTTTGACAGAGACACAGATGTG 666
|||||||.|||||||||||||||||.|||||.|||||.|||||||||||||||||||||||.||||||||||||
Sbjct 347 ACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAGCGGCCCTCCTTTGACAGGGACACAGATGTG 420
Query 667 CACACTGTGGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGCCCGTGGTTCCCTGGAGCCAGTACGA 740
|||||.|||||.||.||..||||||||||||||||||||||.||||||||.||||||||.|||||.|||||.||
Sbjct 421 CACACGGTGGCATCTCTACTAAAGCTCTACCTCCGAGACCTGCCAGAGCCTGTGGTTCCTTGGAGTCAGTATGA 494
Query 741 AGGGTTCCTGCTCTGTGGGCAGCTCACGAATGCGGATGAGGCAAAGGCTCAGCAGGAGTTGATGAAGCAGCTCT 814
||||||||||||||||||||||||||.|||.||.|||||||||||||||||||||||||||.||||||||||.|
Sbjct 495 AGGGTTCCTGCTCTGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAAGCAGCTTT 568
Query 815 CCATCCTTCCTCGTGACAACTATAGTCTCCTGAGCTACATCTGCAGGTTCCTACATGAAATACAGCTGAACTGT 888
|.|.||||||.||.||||||||.|..||||||||||||||||||||.||.||.||||||||.||||||||||||
Sbjct 569 CTACCCTTCCCCGAGACAACTACAACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAATCCAGCTGAACTGT 642
Query 889 GCTGTTAACAAGATGAGTGTGGACAACCTGGCTACTGTGATTGGTGTGAATCTCATCAGGTCGAAGGTCGAAGA 962
||.||.|||||||||||.||||||||||||||.||||||||.||.|||||.|||||||||||||||||.|||||
Sbjct 643 GCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCATCAGGTCGAAGGTTGAAGA 716
Query 963 CCCTGCCGTGATCATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACTATGATGATCAGAGACCATGAAGTCC 1036
|||.||.|||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||
Sbjct 717 CCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACCATGATGATCAGAGACCACGAAGTCC 790
Query 1037 TCTTCCCCAAGTCCAAGGATATACCCCTGTCACCCCCTGCCCAGAAAAATGACCCCAAGAAAGCTCCAGTGGCC 1110
|||||||||||||.||||||..|||..|.||||||||||||||||||||.||..|||||||.|||||||||.|.
Sbjct 791 TCTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAAAAACGATGCCAAGAAGGCTCCAGTGCCG 864
Query 1111 CGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCTCCGAATTTCTAGGACAGACAGCTTCAGTAGCATGGTAAG 1184
|||||||||||.||.|||||||||||.|||||||..|...||||||||||||||||||||||||.||..|.|||
Sbjct 865 CGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTAGGACAGACAGCTTCAGTAACACAGCAAG 938
Query 1185 GTGCAGAGAACCTTCCTGCTTCCATTGGGTTCTTCCTTTAGTCCAGGCCATCCCA-TGTAAGGC--CTGCTCTC 1255
..| |||||.|.||| |||| ||||| || |.| |||| |
Sbjct 939 TAG----------TCCTGATGCCA------------------CCAG----TCCCACTG---GACCACTGC---C 974
Query 1256 GGGTG----GCAATTTGGGGAGTTTTAGGTGATG-CAGTGG---------CAG----------------TGGGC 1299
..||| ||| |.|| ||.| |||.|| ||| |||..
Sbjct 975 CAGTGACCAGCA------------TCAG--GAAGACAGCGGAAAAGCCCCCAGGGAAAACCCAGGAGACTGGAA 1034
Query 1300 GCTGC--TGC--TACA--GACTCATCTGAACAC------ACCTTGAAAG-----CCT---GGCCTCTTTCC--- 1350
|.||| |.| ||.| |||||| |||.| ||| |.||| ||| |.||.|.||||
Sbjct 1035 GATGCAATCCCGTAAAAGGACTCA----AACGCTTCCCAACC--GGAAGTGTTTCCTGACGTCCGCATTCCAAG 1102
Query 1351 ---------------------AAATCT---------AGTT----TCTATTGGCATCTT---------------- 1374
|||||| |||| ||| .||||||
Sbjct 1103 GCACCACCAGCAGTAAACTGGAAATCTTTAAAAATGAGTTCTGGTCT----CCATCTTCAGAGGCTAAGGCAGG 1172
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1173 AGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTTCCAATGACCAGCGGACTTCTACCTACGATA 1246
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1247 ATGTCCCCACCTCACCACAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTCCCCCTGCCAGTGACTCCAAGAGA 1320
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1321 GATGCTCTTGTTAGCACAGACTCTGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGATGACCTTGATTCTCT 1394
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1395 GCAGAGGACAGTCCAGAGCCTACAGAAGGAAATAGAAACCCAGAAGCAGGTCTATGAGGAACAGATTAAAAACC 1468
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1469 TGGAGAAGGAAAATTACGATGTCTGGGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAGGGAGAGGAAGAAA 1542
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1543 TTCGCGGCCCTGGAAATCAGCCTTCGAAATGTGGAGCGCTCCCGGGAGGACGTTGAGAAGAGGAACAGAGTCTT 1616
Query 1375 ------------------------------------------------------------- 1374
Sbjct 1617 GGAAGAAGAAGTCAAGGAGTTTGTGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATCCT 1677
