Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11746
- Subject:
- XR_001756516.1
- Aligned Length:
- 2999
- Identities:
- 1100
- Gaps:
- 1725
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACACCCTGTGTGTCTCTCTGTCCTGCCAGCACTGAGGGCTCATCCCTCTGCAGAGCGCCGGGTCACCGGGAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACGCCATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCTGGGGGAGCCCCGTGACCATCT 222
Query 1 -------------------------------------------------ATGTCGA-------GGCACATATTA 18
|.|.|.| ||.|||.| |
Sbjct 223 GGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCAACTGGATAAAGAGGGAAGCCCAGAGCCCTGGGACAGA--A 294
Query 19 AAAA--CACTGGAGTCTGAAAACAAGGTCAAACTCTCCATCCCATCCATGATGTGGGAACATGCAGGGCGATAT 90
|.|| |||||||..|..|.|||||||.||.|.||||||||||||||||||....|.|.|||||||||.||||.
Sbjct 295 ATAACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACACAGCACCATGCAGGGAGATAC 368
Query 91 CACTGTTACTATCAGAGCCCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGGTGACAG---CCTA 161
|.|||..|||||.|.|||.|||||||||||||||||||||||||||||||||||||||||.|||||| .|||
Sbjct 369 CGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGATTCTA 442
Query 162 CAGCAGACCCACCCTGTCCGCCCTGCCAAGCCCTGTGGTAACCTCAGGAGTGAACGTGACCCTCCGGTGTGCCT 235
||.||.|||||||||.||.||||||||.|||||||||||..|||||||.|.|||..||||||||||.||||.||
Sbjct 443 CAACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCT 516
Query 236 CACGGCTGGGACTGGGCAGGT-TCAC--------TCTGATTGAGGAAGGAGACCACAGGCTCTCCTGGACCCTG 300
|||.|..|||| | |||| ||||||..||||||||||.|||..||||.||.||||||||
Sbjct 517 CACAGAAGGGA---------TATCACCATTTTGTTCTGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTG 581
Query 301 AACTCACACCAACACAACCATGGAAAGTTCCAGGCCCTGTTCCCCATGGGCCCCCTGACCTTCAGCAACAGGGG 374
.|||||||.||.|.|.||..|||...||||||||||||||||||..||||||||.|||||..||||.|||||.|
Sbjct 582 GACTCACAGCAGCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGACCCCCAGCCACAGGTG 655
Query 375 TACATTCAGATGCTACGGCTATGAAAACAACACCCCATACGTGTGGTCGGAACCCAGTGACCCCCTGCAGCTAC 448
.|..||||.||||||...||||.|.|..||||||||.|..||||||||..|.|||||||||||||||.||.|.|
Sbjct 656 GAGGTTCACATGCTATTACTATTATACAAACACCCCCTGGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTC 729
Query 449 TGGTGTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCGTGACCCCCGGAGAGAATCTG 522
||...||||||||||||||||||||||||||||||||||||||||||||||||.||.||||.||..|||..|||
Sbjct 730 TGCCCTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTG 803
Query 523 ACCCTCCAGTGTGGCTCTGATGTCGGCTACATCAGATACACTCTGTACAAGGAGGGGG-CCGATGGCCTCCCCC 595
||||||||||||||||||||||||||||||..|||||....||||||.|||||||||| .|| ||.|.|||.||
Sbjct 804 ACCCTCCAGTGTGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACG-TGACTTCCTCC 876
Query 596 AGCGCCCTGGCCGGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGAGCCCTGTGAGCCGCTCCTAC 669
||||||||||||.||||||||||||||||||||||||||||||||||||||||.||||||||||||.||||.||
Sbjct 877 AGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCAC 950
Query 670 GGGGGCCAGTACAGATGCTACGGCGCACACAACGTCTCCTCCGAGTGGTCGGCCCCCAGTGACCCCCTGGACAT 743
||||||||||||||.|||||.||.|||||||||.|||||||||||||||||||||||||.|||||||||.||||
Sbjct 951 GGGGGCCAGTACAGGTGCTATGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACAT 1024
Query 744 CCTGATCGCAGGACAGATCTCTGACAGACC--CTCCCTCTCAGTGCAGCCGGGCCCCACGGTGACCTCAGGAGA 815
||||||.|||||||||||||.|||| ||| ||||||.||||..||||||||||||||.|||.||||||||||
Sbjct 1025 CCTGATGGCAGGACAGATCTATGAC--ACCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGA 1096
Query 816 GAAGGTGACCCTGCTGTGTCAGTCATGGGACCCGATGTT-------CACTTTCCTTCTGACCAAGGAGGGGGCA 882
|||.|||||||||||||||||||||.||| ||| ||||||||||||||||||.||.||||||
Sbjct 1097 GAACGTGACCCTGCTGTGTCAGTCACGGG-------GTTATTTTGACACTTTCCTTCTGACCAAAGAAGGGGCA 1163
Query 883 GCCCATCCCCCGTTGCGTCTGAGATCAATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGT 956
|||||||||||..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GCCCATCCCCCACTGCGTCTGAGATCAATGTACGGAGCTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGT 1237
Query 957 GACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGCTCACGCAGCTCCAACCCCTACCTGCTGTCTCACCCCA 1030
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1238 GACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGCTCACGCAGCTCCAACCCCCACCTGCTGTCTCACCCCA 1311
Query 1031 GTGAGCCCCTGGAGCTCGTGGTCTCAGGAGCAACTGAGACCCTCAA---TCCAGCACAAAAGAAGTCAGATTCC 1101
|||||||||||||||||.|||||||||||.|..||| ||..|||.| |||..|.||.|.| |.|....|||
Sbjct 1312 GTGAGCCCCTGGAGCTCATGGTCTCAGGACCCTCTG-GAGGCTCCAGCCTCCCACCCACAGG--GCCGCCCTCC 1382
Query 1102 AAGACTGCCCCACACCTCCAGGATTACACAGTGGAGAATCTCATCCGCATGGGTGTGGCTGGCTTGGTCCTGCT 1175
|...|||||.|||||..|.||||||||||||||||||||||||||||||||||..||||.||||||||||||.|
Sbjct 1383 ACACCTGCCTCACACGCCAAGGATTACACAGTGGAGAATCTCATCCGCATGGGCATGGCAGGCTTGGTCCTGGT 1456
Query 1176 GTTCCTCGGGATTCTGTTATTTGAGGCTCAGCACAGCCAGAGAAGCCCCCCAAGGTGCAGCCAGGAGGCAAACA 1249
|||||||||||||||||||||||||||||||||||||||||||| .||||||||.|||||||.|||||..||||
Sbjct 1457 GTTCCTCGGGATTCTGTTATTTGAGGCTCAGCACAGCCAGAGAA-ACCCCCAAGATGCAGCCGGGAGGTGAACA 1529
Query 1250 GCAGAAAGGACAATGCACCCTTCAGAGTGGTGGAGCCTTGGGAACAGATC------------------------ 1299
||.||.|||||||||||||||||||.||||||||||||..||.|||||||
Sbjct 1530 GCGGAGAGGACAATGCACCCTTCAGCGTGGTGGAGCCTCAGGGACAGATCTGATGATCCCAGAAGGCTCTGGAG 1603
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1604 GACAATCTAGGACCTCCAGAGGGGGGTGAGATTTCAGGCCACACACTGTGGAAGGTAATCATGTCTGATCACAA 1677
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1678 ATTTTGGGTCTCCACCTTACTTCCAATCTATGTTGTGAATGCCCAGTTGAGACCCACGGAAAAGAGCTCATGGC 1751
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1752 TTGTATGGCAGTCTCCCACCCTCATGTGTTCAATCTGATGATCCCAGGAGGTTCTGGAACAAAATCTACAGCCT 1825
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1826 ATGCTTTCTGGACTATCTGTCGATCATTCCTGAAGAGAGGGATCAATGTTGAGGTATTCATTTCACATGATGAA 1899
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1900 AATGACAATATCAAATGTCAGAGGTAGTAGGGCTCACGTAGAAATCCAATACATCCATGGTAGGACTGCAAATT 1973
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1974 ACTTGAATCAATTTGGGGAAAATATCAGAAGTACCCAGTGAAAAAGAAGAAACATGGCCGGGCGCGGTGGCTCA 2047
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2048 TGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGACACGAGTTCAGGAATTCGAGTCCAGCTTGGCCA 2121
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2122 ACATAGTGAAACCCCGTCTCTACTAAAAATACAAAACATTAGCTGGGCGTGGTGGCAGGTGCCTGTAATTTCAG 2195
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2196 CTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGACGGAAGCAAGTTGGCGCCAGTTGGTGCAGT 2269
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2270 GAGCCAAGATGGCATTGCACTCTGGCCCAGGTGACAGTACGAGACTTCATCTAAAAAAAAAAGAAAAAAAAAAA 2343
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2344 GAAGAGACACACAGCTATGAACACAGAGCACAGAACCTAGAGGAAAATGTGTTCATATGGTGAGGTTTCATTCA 2417
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2418 CAACAACATGGACAGGACTGCTGCTCATATTACACAACAGCCATAAAACCCAAAAATACATCTAAAACAAAGGA 2491
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2492 AACATATGTGGTTCAATTCCACCAAGGGATACTATGGGGCCGTGCAGAGGCACAGACAAAATCTACAAAGAGCA 2565
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2566 ATGCAAACCAACCTTCCATCATGATGTTGAGTAAAGAAACAAGAGTATAAAAAGAAGGTGTGCACATGAAGCTC 2639
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2640 AAAAAGAGGCAGCATTTATTTTCTAGGGAGGCAAACTCAAAATAGACCCCATAAATAAAGGAAATAGATTATGT 2713
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2714 AATCCAAAATAGTGCTTGCACATCAGGAAATACTGGAGGGTTCTGTTCAACATGGAAACTCCAAGGACCACTGG 2787
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2788 ACGCGGGCACTGGAATGCTGACTTTGATTTGGTGACCCTCAATCCACTTCGAGTTATTGGTAAATCACATAATT 2861
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2862 TTAATTTGATACGGAATAATCATACATGTTTCTTGGGAGCATGTGGTAATCTGATTCATCCATGCAATGTGTAA 2935
Query 1300 --------------------------------------- 1299
Sbjct 2936 CGATCCAATAAAGGTTCCCAGGACATTCATCACCCTGAA 2974
