Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11931
Subject:
NM_001122897.2
Aligned Length:
1673
Identities:
917
Gaps:
655

Alignment

Query    1  ATGGCGACTGATACGTCTCAAGGTGAACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGAT  74
            |||||.|||||||.||||||||||||||||.||||||||||||||||||||||||||||||||||.||||||||
Sbjct    1  ATGGCAACTGATATGTCTCAAGGTGAACTCATCCATCCTAAGGCACTCCCACTTATAGTAGGAGCGCAGCTGAT  74

Query   75  CCACGCGGACAAGTTAGGTGAG---GTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGG  145
            ||||||||||||||||||||||   |.||||||||.|||||||||.||.||||||.|.||||||||||||||||
Sbjct   75  CCACGCGGACAAGTTAGGTGAGAAAGCAGAAGATACCACCATGCCTATACGTCGAGCCGTGAATTCTACCCGGG  148

Query  146  AAACTCCTCCCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCT  219
            |||||||.|||||||||||.|||||||||||||||||||||||.|||||||||||...||||||||||||||||
Sbjct  149  AAACTCCACCCAAAAGCAAACTTGCTGAAGGGGAGGAAGAAAAACCAGAACCAGATGGAAGTTCAGAGGAATCT  222

Query  220  GTCTCCACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGA  293
            .||||.||||||||||||||.||||||||.||||||||||||||.||.|||||||||||||||||.||||||||
Sbjct  223  ATCTCTACTGTAGAAGAACAGGAGAATGAGACTCCACCTGCTACATCCAGTGAGGCAGAGCAGCCCAAGGGGGA  296

Query  294  ACCTGAGAATGAAGAGAAGGAAG------AAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGT  361
            .|||||||.||.|||||||||||      |.||.||||||.||||||||.||||||||||||||||.|||||||
Sbjct  297  GCCTGAGAGTGGAGAGAAGGAAGAGAACAACAACAAGTCTGCTGAGGAACCCAAAAAGGATGAGAAGGATCAGT  370

Query  362  CTAAAGAAAAGGAGAAGAAAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGG  435
            ||||||||||||||||||||||||||||.||.||||||.|||||||.||.||.|||||||||||||||||||||
Sbjct  371  CTAAAGAAAAGGAGAAGAAAGTGAAAAAGACGATTCCTGCCTGGGCGACTCTCTCTGCCAGCCAGCTAGCCAGG  444

Query  436  GCCCAGAAACAAACACCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGC  509
            |||||||.||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||||||||||||||
Sbjct  445  GCCCAGAGACAAACCCCCATGGCTTCCTCCCCACGGCCCAAGATGGACGCAATCTTAACTGAGGCCATTAAGGC  518

Query  510  ATGCTTCCAGAAGAGTGGTGCATCAGTGGTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGC  583
            ||||||||||||||.|||.||.||.||||||||.||||||||.||||||||.||||||||.||.|||||||..|
Sbjct  519  ATGCTTCCAGAAGACTGGCGCCTCGGTGGTTGCGATTCGAAAGTACATCATTCATAAGTACCCGTCTCTGGGTC  592

Query  584  TGGAGAGAAGGGGTTATCTCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAA  657
            |||||||||||||.|||||.||.||.|||||.|||||.|||||.|||||.|||||||||||||.||||||.|||
Sbjct  593  TGGAGAGAAGGGGCTATCTGCTCAAGCAAGCGCTGAAGAGAGAGTTAAACAGAGGAGTCATCAGACAGGTAAAA  666

Query  658  GGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAA  731
            |||||||||||.|||||.||||||||||||||.||||||||   ||||.|||||||||||||||.|||||||||
Sbjct  667  GGAAAAGGTGCATCTGGCAGTTTTGTTGTGGTCCAGAAATC---AAAACCACCTCAGAAATCCAAAAACAGAAA  737

Query  732  GAATAGGAGCTCTGCAGTGGATCCAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCC  805
            |||   |.||||.||..|||||||||||||||||||||||.||||.|||||.|||||..||||.||||||||.|
Sbjct  738  GAA---GGGCTCGGCTCTGGATCCAGAACCACAAGTAAAACTGGAAGATGTTCTCCCGTTGGCTTTTACTCGGC  808

Query  806  TTTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTG  879
            |.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.||||||
Sbjct  809  TCTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATACGTGTCTCAGTATTACCCTAAGCTCAGAGTG  882

Query  880  GACATCAGGCCTCAGCTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGG  953
            |||||||||||.|||.||||||||||.|||||||||.|||||||||||||.||||||.|.||.|||||||||||
Sbjct  883  GACATCAGGCCCCAGTTGTTGAAGAATGCTCTGCAGCGAGCAGTAGAGAGAGGCCAGCTCGAGCAGATAACTGG  956

Query  954  CAAAGGTGCTTCGGGGACATTCC------AGAAAT--GGGGTTTCGCC--------GTG---------------  996
            |||.|||||||||||||||||.|      ||||||  ||||....|||        |||               
Sbjct  957  CAAGGGTGCTTCGGGGACATTTCAGCTGAAGAAATCAGGGGAGAAGCCCCTGCTGGGTGGAAGCCTGATGGAAT  1030

Query  997  ------------------TTGC--CCAGG-------------------------CTACTCTTGAA-------CT  1018
                              ||||  |||.|                         ||.||| ||||       .|
Sbjct 1031  ATGCAATCTTGTCTGCCATTGCTGCCATGAACGAGCCTAAGACCTGCTCCACCACTGCTC-TGAAGAAGTATGT  1103

Query 1019  CCTGGGTTCAG---------------------------------------------------------------  1029
            |||||    ||                                                               
Sbjct 1104  CCTGG----AGAACCACCCAGGGGCCAACTCTAACTATCAGATGCATTTGCTGAAAAAAACCCTGCAGAAATGT  1173

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1174  GAGAAGAACGGGTGGCTGGAGCAGATCTCTGGGAAGGGGTTCAGCGGCACCTTCCAGCTGTCCTTCCCCTACTA  1247

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1248  CCCTAGCCCAGGAGTTCTATTTCCGAAGAAAGAATCCGGTGGCTCTGACGATGAAGATGAAGATGACGATGACG  1321

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1322  ATGAATCATCAGAAGACTCTGAGGATGAGGAACCACCACCCAAGAGGAGCTTACAGAAGAAAACACCAGCCAAG  1395

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1396  TCCCAAGGGAAGACAGCCTCCATGAAGCAGAGAGGGTCGAAGCCTGCGCGGAAAGTCCCGGCTGCCCAGAGAGG  1469

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1470  GAAAGTGAGGCCGCTGCCTAAGAAAGCTCCACCCAAGGCCAAGACCCCTGCCAGGAAAGCCAGACCCTCTCCCT  1543

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1544  CAGTCATCAAGAAGCCTAGTGGGAGCTCCTCCAGAAAGCCCATAGCCAGTGCACGAAAGGAAGCGAAACTGCCC  1617

Query 1030  ---------------------------------------------  1029
                                                         
Sbjct 1618  GGGAAGGGCAAATCTGCCATGAAGAAGTCTTTCAAGACAAAAAAG  1662

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