Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11931
Subject:
XR_001737206.2
Aligned Length:
4600
Identities:
1009
Gaps:
3582

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTGCATGTGAGGATTAGGGAGCCCGGAAAGCCCGTTTCAACTTTTCAGTTCTGAGTCCCGAGTCACTACTCTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTGTACCGTCTGGAGACTTAATGGGAGCGAGTGCGAGGCAGTGAATTCTCCGCTCTCTAGTTTTCCAATTCTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGTCTTCAAAAAAAGGTTTGCTCTTGAGCTGCGCCTAAACTGAGAAGCGGGAAAGGCTAGCCCCGCTAAAGGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGACGAGTGGCAGAAGCGGAAACCCAGTTAAGAGAAGGGACTGCCCTGGAGAGCACAGAAAGCGAAGGTTAGCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGGGAAAGCGGCGCCCCTCCGAGGAAACCGACACCGCCCCGCCACGCCAAGGCAATGGGCGCCACCACGCAGCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCGGGAACGCGCGCCGACGCCCCGCGCTCCGCCGGCGTCCGCCCGTCCCCGCGCGCCCCCTCGCACCCCACGCG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGGGAGGCGGGGCCGGCGGGGGCGCGCGCGGGGCCGCGGGTAGGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGAGCGGCGCCGAGAGGCCGTGCGGGACGCGGGCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCAGGACCGGCCGAACGCAGAGGTTGATTCTTCACCACACTGAAACCATTAGGAAAAATCCTTGTGGTTAACAG  666

Query    1  ------------------------------------------------ATGGCGACTGATACGTCTCAAGGTGA  26
                                                            ||||||||||||||||||||||||||
Sbjct  667  CAGAGGCTTCAGAGTGTAACCTGTACTCGGGCCTAGAAATTATTTAAAATGGCGACTGATACGTCTCAAGGTGA  740

Query   27  ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTG---AGG  97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct  741  ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGG  814

Query   98  TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT  171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT  888

Query  172  GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA  962

Query  246  TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA  1036

Query  320  ATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACA  393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACA  1110

Query  394  ATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCC  467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCC  1184

Query  468  ACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTG  541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTG  1258

Query  542  CTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCA  615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCA  1332

Query  616  CTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGT  689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGT  1406

Query  690  TCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCAC  763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCAC  1480

Query  764  AAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTC  837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTC  1554

Query  838  ATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCT  911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCT  1628

Query  912  GCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGAAATGGG  985
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||    
Sbjct 1629  GCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGGAA----  1698

Query  986  GTTTCGCCG-------TGTTGCCCAGG---CTACTCTTGAACTCC--TGGGTTCAG------------------  1029
                |.|||       ||.|||..|||   ||..||||||.||.|  ||||   ||                  
Sbjct 1699  ----CTCCGACCCACCTGGTGCAGAGGAGTCTTGTCTTGACCTGCTTTGGG---AGAGTGTTGTCTTGATGCTT  1765

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1766  TTCTCTTCCTCCTTGGAAAACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATAT  1839

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1840  GCAATCTTGTCTGCCATTGCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCT  1913

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1914  AGAGAATCACCCAGGAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGA  1987

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1988  ATGGGTGGATGGAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGC  2061

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2062  CCAGGAGTTCTGTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGA  2135

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2136  AGAAGACTCTGAGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGGGA  2209

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2210  AGGCCGCATCTGTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAAGCTAGG  2283

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2284  CCCTTGCCTAAGAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCACAGTCATCAA  2357

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2358  GAAACCTAGTGGTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAAATTGCCGGGCAAGGGCA  2431

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2432  AATCCACCATGAAGAAGTCTTTCAGAGTGAAAAAGTAAATTTTATAGGAAAAAAGGGTATCATGATGAAATTCA  2505

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2506  AAATCTTATTTTCTAAGGTCAGTGTGCATTTGTTTAGTTTTGATGCTTTTCAAATTACATTATTTTCCTCCCCT  2579

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2580  ATGAACATTGTGGGGAGGGACTCTAAATAAACCAGTTTAGGCATTTGCTAGCTTTAGGTGCTTTTATTGGTGCC  2653

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2654  TGCCCTTTTCCTTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCC  2727

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2728  TTTTTCTCTGCCTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATC  2801

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2802  TAAACAGTTGCAGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAA  2875

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2876  TGGAGGCACAATATAGCACTGACTGAGTTGTAAAGCCTCCTGCCTGGAGACTTCAGTTATAGCTGTAATAATTA  2949

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2950  ATCTTATTTATAAAAGCCACTCCACTAACCTTTTCTCTCCAACTGTAAACACAGAGACAGCTTTGGGAATAAGC  3023

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3024  CAAAAACAGGGTGATCTCATTAGATTTTGAAGATATATGACTCCTTTGGGCTACATTTCATATTGATCAATTTC  3097

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3098  TAGGTATTTTTCACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTT  3171

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3172  TGTTGTTGTTGTTGTTGTCGTCGTTGTTTTGAGACGGAGTCTTGCTCAGGTGCCCCGGAGTGCAGTGGTGCAAT  3245

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3246  CTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTA  3319

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3320  CAGGTGTGTACCACCACGCCTGGCAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCGTGTTGGTCAGGC  3393

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3394  TGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCC  3467

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3468  ACTGTGCCTGGCCTATCCCACTTGGTTTTTGACTGAAGGGGAAGTGTAGAAATATATTGATTTGTGATTTCTGG  3541

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3542  TGTCACCTGTGTTACCAAAAATCAAAACAAATCTTTTTTATTTTTTATTATTATTATTATTTTTGAGACAGAGT  3615

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3616  CTCGCTCTGTCGCCCAGTGTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAAACTCCGCCTCCCAGGTTCAAG  3689

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3690  CGATTCTCCCACCTCAGCCTCCTGAGTTGGGTCCTACAGGCGCACACGACCACGCCCAGCTAATTTTTTGTATT  3763

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3764  TTTAGTAGAGTTGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACTCACCTCA  3837

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3838  GCCTCCCAAAATCCTGGGGTTACAGATGTGAGCTACCACTCACGGCCCAAATCTTCTTGATCATATGTTTAAAT  3911

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3912  ATATTTTTTAATATTTGGAGCATGAGTTGTCACTTCTTGTTTGCCTTTTTTATAAGGAAATGTTGGAGAGTTAC  3985

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3986  ATCATTGCTAATGTAGAAATGTTAAGTGGAAAAATATACAGTTTGGTAAAATAAACTAGATTCTACATTTATTT  4059

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4060  GTGGGTTTTTTTCCCCTCCTTTCTTTCCACAGCACTTTTGATATCAAGCAAGTGGCTTCCTTTTTGAGATATTA  4133

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4134  AAAAAAAAAAGAAAAGGAAAAAAGTAAATGAAGCCCAACTACCTAACCCTTTCTTATTTGTATTTGTTTTAGTA  4207

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4208  TTGTGAAGTTGTGTTAAATAGTACTAGCTAGAAATACAAATTTCTGGTTATCATTTCTCTTCCCTGTGGCACTT  4281

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4282  GACATTTTAATTGTCTTAAAGTTTTTGAAGTACATCTTCTGGCCCCTTGAGTACTGCCAGAGGCAAAAGATGTT  4355

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4356  TGTTTCTTATTCATTCCACTTTTGTCTCCTGGGATCCCTTCTGTAGCCTAAAGTATGGCTGGGAAATGGACTTG  4429

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4430  AGAAGATTGGCTTGAATTAGATCATAATCATGTGTGATCCCATCATGAATTCATTGGAATTTGTGTTGCATGTA  4503

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 4504  AGGCAATCTTTCCTGTTGTAAATCTTCCTTTTTTAATGTACATATATTTTGAAAAATATGAATAAACATGAAAT  4577

Query 1030  ------------  1029
                        
Sbjct 4578  TTTAAAAGCTGC  4589

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