Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11931
- Subject:
- XR_001737206.2
- Aligned Length:
- 4600
- Identities:
- 1009
- Gaps:
- 3582
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCATGTGAGGATTAGGGAGCCCGGAAAGCCCGTTTCAACTTTTCAGTTCTGAGTCCCGAGTCACTACTCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGTACCGTCTGGAGACTTAATGGGAGCGAGTGCGAGGCAGTGAATTCTCCGCTCTCTAGTTTTCCAATTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGTCTTCAAAAAAAGGTTTGCTCTTGAGCTGCGCCTAAACTGAGAAGCGGGAAAGGCTAGCCCCGCTAAAGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGACGAGTGGCAGAAGCGGAAACCCAGTTAAGAGAAGGGACTGCCCTGGAGAGCACAGAAAGCGAAGGTTAGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGGAAAGCGGCGCCCCTCCGAGGAAACCGACACCGCCCCGCCACGCCAAGGCAATGGGCGCCACCACGCAGCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCGGGAACGCGCGCCGACGCCCCGCGCTCCGCCGGCGTCCGCCCGTCCCCGCGCGCCCCCTCGCACCCCACGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGGAGGCGGGGCCGGCGGGGGCGCGCGCGGGGCCGCGGGTAGGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGAGCGGCGCCGAGAGGCCGTGCGGGACGCGGGCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAGGACCGGCCGAACGCAGAGGTTGATTCTTCACCACACTGAAACCATTAGGAAAAATCCTTGTGGTTAACAG 666
Query 1 ------------------------------------------------ATGGCGACTGATACGTCTCAAGGTGA 26
||||||||||||||||||||||||||
Sbjct 667 CAGAGGCTTCAGAGTGTAACCTGTACTCGGGCCTAGAAATTATTTAAAATGGCGACTGATACGTCTCAAGGTGA 740
Query 27 ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTG---AGG 97
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 741 ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGG 814
Query 98 TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT 888
Query 172 GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA 962
Query 246 TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA 1036
Query 320 ATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACA 1110
Query 394 ATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCC 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCC 1184
Query 468 ACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTG 1258
Query 542 CTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCA 1332
Query 616 CTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGT 1406
Query 690 TCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCAC 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCAC 1480
Query 764 AAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTC 1554
Query 838 ATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCT 1628
Query 912 GCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGAAATGGG 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1629 GCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGGAA---- 1698
Query 986 GTTTCGCCG-------TGTTGCCCAGG---CTACTCTTGAACTCC--TGGGTTCAG------------------ 1029
|.||| ||.|||..||| ||..||||||.||.| |||| ||
Sbjct 1699 ----CTCCGACCCACCTGGTGCAGAGGAGTCTTGTCTTGACCTGCTTTGGG---AGAGTGTTGTCTTGATGCTT 1765
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1766 TTCTCTTCCTCCTTGGAAAACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATAT 1839
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1840 GCAATCTTGTCTGCCATTGCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCT 1913
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1914 AGAGAATCACCCAGGAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGA 1987
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 1988 ATGGGTGGATGGAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGC 2061
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2062 CCAGGAGTTCTGTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGA 2135
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2136 AGAAGACTCTGAGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGGGA 2209
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2210 AGGCCGCATCTGTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAAGCTAGG 2283
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2284 CCCTTGCCTAAGAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCACAGTCATCAA 2357
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2358 GAAACCTAGTGGTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAAATTGCCGGGCAAGGGCA 2431
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2432 AATCCACCATGAAGAAGTCTTTCAGAGTGAAAAAGTAAATTTTATAGGAAAAAAGGGTATCATGATGAAATTCA 2505
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2506 AAATCTTATTTTCTAAGGTCAGTGTGCATTTGTTTAGTTTTGATGCTTTTCAAATTACATTATTTTCCTCCCCT 2579
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2580 ATGAACATTGTGGGGAGGGACTCTAAATAAACCAGTTTAGGCATTTGCTAGCTTTAGGTGCTTTTATTGGTGCC 2653
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2654 TGCCCTTTTCCTTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCC 2727
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2728 TTTTTCTCTGCCTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATC 2801
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2802 TAAACAGTTGCAGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAA 2875
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2876 TGGAGGCACAATATAGCACTGACTGAGTTGTAAAGCCTCCTGCCTGGAGACTTCAGTTATAGCTGTAATAATTA 2949
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 2950 ATCTTATTTATAAAAGCCACTCCACTAACCTTTTCTCTCCAACTGTAAACACAGAGACAGCTTTGGGAATAAGC 3023
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3024 CAAAAACAGGGTGATCTCATTAGATTTTGAAGATATATGACTCCTTTGGGCTACATTTCATATTGATCAATTTC 3097
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3098 TAGGTATTTTTCACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTT 3171
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3172 TGTTGTTGTTGTTGTTGTCGTCGTTGTTTTGAGACGGAGTCTTGCTCAGGTGCCCCGGAGTGCAGTGGTGCAAT 3245
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3246 CTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTA 3319
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3320 CAGGTGTGTACCACCACGCCTGGCAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCGTGTTGGTCAGGC 3393
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3394 TGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCC 3467
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3468 ACTGTGCCTGGCCTATCCCACTTGGTTTTTGACTGAAGGGGAAGTGTAGAAATATATTGATTTGTGATTTCTGG 3541
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3542 TGTCACCTGTGTTACCAAAAATCAAAACAAATCTTTTTTATTTTTTATTATTATTATTATTTTTGAGACAGAGT 3615
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3616 CTCGCTCTGTCGCCCAGTGTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAAACTCCGCCTCCCAGGTTCAAG 3689
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3690 CGATTCTCCCACCTCAGCCTCCTGAGTTGGGTCCTACAGGCGCACACGACCACGCCCAGCTAATTTTTTGTATT 3763
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3764 TTTAGTAGAGTTGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACTCACCTCA 3837
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3838 GCCTCCCAAAATCCTGGGGTTACAGATGTGAGCTACCACTCACGGCCCAAATCTTCTTGATCATATGTTTAAAT 3911
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3912 ATATTTTTTAATATTTGGAGCATGAGTTGTCACTTCTTGTTTGCCTTTTTTATAAGGAAATGTTGGAGAGTTAC 3985
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 3986 ATCATTGCTAATGTAGAAATGTTAAGTGGAAAAATATACAGTTTGGTAAAATAAACTAGATTCTACATTTATTT 4059
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4060 GTGGGTTTTTTTCCCCTCCTTTCTTTCCACAGCACTTTTGATATCAAGCAAGTGGCTTCCTTTTTGAGATATTA 4133
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4134 AAAAAAAAAAGAAAAGGAAAAAAGTAAATGAAGCCCAACTACCTAACCCTTTCTTATTTGTATTTGTTTTAGTA 4207
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4208 TTGTGAAGTTGTGTTAAATAGTACTAGCTAGAAATACAAATTTCTGGTTATCATTTCTCTTCCCTGTGGCACTT 4281
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4282 GACATTTTAATTGTCTTAAAGTTTTTGAAGTACATCTTCTGGCCCCTTGAGTACTGCCAGAGGCAAAAGATGTT 4355
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4356 TGTTTCTTATTCATTCCACTTTTGTCTCCTGGGATCCCTTCTGTAGCCTAAAGTATGGCTGGGAAATGGACTTG 4429
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4430 AGAAGATTGGCTTGAATTAGATCATAATCATGTGTGATCCCATCATGAATTCATTGGAATTTGTGTTGCATGTA 4503
Query 1030 -------------------------------------------------------------------------- 1029
Sbjct 4504 AGGCAATCTTTCCTGTTGTAAATCTTCCTTTTTTAATGTACATATATTTTGAAAAATATGAATAAACATGAAAT 4577
Query 1030 ------------ 1029
Sbjct 4578 TTTAAAAGCTGC 4589
