Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11975
Subject:
NR_003108.2
Aligned Length:
1579
Identities:
378
Gaps:
1166

Alignment

Query    1  -------------------------ATGCGG----ATTCTTATA-TTGAGTTTGGATACAGCTGGAAAAACCAC  44
                                     |.|.||    ||||   || .||||||||                ||  
Sbjct    1  GGATGACGTAAAAGGAAAGAGACGGAAGAGGAAGAATTC---TACCTGAGTTTG----------------CC--  53

Query   45  CATCTTGTATAAATTGAAGCTGGGGGAGACTGTGCCTGCCGTC---CCT-------------------------  90
                    |||||                  |||||||||.||   |||                         
Sbjct   54  --------ATAAA------------------GTGCCTGCCCTCTAGCCTCTACTCTTCCAGTTGCGGCTTATTG  101

Query   91  ----ACAGTAGGTTTCTGTGTGGAGACAGT-AGAA--------TAT-----AAA--------AATAA-------  131
                |||||| .||.||||..|.||   || ||||        |||     |||        ||.||       
Sbjct  102  CATCACAGTA-ATTGCTGTACGAAG---GTCAGAATCGCTACCTATTGTCCAAAGCAGTCGTAAGAAGAGGTCC  171

Query  132  ----CACCTTCGCTGTCTG-------GGATGTTGGCAGCCACTTC---AAAA---TCA---GACCTCTG--TGG  183
                |.||..|.||.||.|       |||.||...|||   .|||   ||||   |||   ||  ||||  |  
Sbjct  172  CAATCCCCCACTCTTTCCGCCCTAATGGAGGTCTCCAG---TTTCGGTAAAAGTTTCATTTGA--TCTGAAT--  238

Query  184  CAGCATTTTTTCCAGAACACAAA-----------------------AGGTGCCAGAAGCCCAGGAAGCACACAT  234
             ||.|||        ||.|.|||                       ||||||..||||||||||||||||||||
Sbjct  239  -AGTATT--------AAAATAAAATACCTGGATGAGGAAGATGAAGAGGTGCTGGAAGCCCAGGAAGCACACAT  303

Query  235  CAAGGCTCACTTGCCAGCGGGGTGCTGCCAATAAAATGTAGTCACGTGGAATTTGGAATGTGGAAAGGAGGTAG  308
            ||||||||.|||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct  304  CAAGGCTCCCTTGCCAGCAGGGTGCTGCCAATAAAAGGTAGTCACGTGGAATTTGGAATGTGGAAAGGAGGTAG  377

Query  309  AAGTCATCCTTTCCTCCCCCATAGCAGCAGGTGTGCAGGCTCTGGTGGTCAGCTGGACTCCATACTCCCCCACC  382
            |||||||||||||||||||..||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  AAGTCATCCTTTCCTCCCCTGTAGCAGCAGGCGTGCAGGCTCTGGTGGTCAGCTGGACTCCATACTCCCCCACC  451

Query  383  AGTCACCAGCCTGGGGACCGTGGGGCTGCAAGGACCTCAGCAGCGGTTTCCCAAGTTTCCTGACTTCTTCCATC  456
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  452  AGTCACCAGCCTGGGGACCGTGGGGCTGCAAGGACCTCAGCAGCGGTGTCCCAAGTTTCCTGACTTCTTCCATC  525

Query  457  CTCTGGAAATCAGCTGT----------GGTAAAG----------------------------------------  480
            |||||||||||||||||          |.|||.|                                        
Sbjct  526  CTCTGGAAATCAGCTGTGTTTGCTGAGGATAATGGCCTCAAGATCCATCTGTGTTCCTACAAAAGAGATGATCT  599

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct  600  TGTTCTTTTTTATGATTGCACATCTTTTGTTCTAACGTTTGGTCCTTCACCTTGGTTCCTGACACAAGGATTCC  673

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct  674  TAAATCCCTTGGAATTTTCTGCATGATAGGAGCGTCCTTTGTTCTCATGAGGTGACTCTTGGTGGGCTCCTTAT  747

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct  748  TTGGGGACTGGTCACCAAAAATACCTAACTATGGTTGGAAGCTTAGTGCTTTCAGCCCCATTCCCCATCCTCTG  821

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct  822  GGGTGGGGAGCAGAGCTGGAGCTCGATCATGCCTGCGTGACAAAGCCTCCAGAAAAATCCTTGAAAGACAGGAC  895

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct  896  ATGGAGAGCTGCTGGGTTGGCGAACACATCCATGTGCCGGGAGGATGGTGCACCCCAACTCCACAAGGACCCTT  969

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct  970  CCAGACCTCACCCTGTGTATCTCTTCATCTGGCTGTTCATTTAGCAGCTCCGAGGGCAGGCATGGTGGCTCATG  1043

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct 1044  CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGTTCATCTAAGGTCTGGAGTTCGAGACCAGCCTGGCC  1117

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct 1118  AACATAGCGAGAGCAGCTCCGGTGGCGGGAGGAGTGGCAGCGGCCAGGCAGCCCAGCTTCGCGAAGGCTGTAGG  1191

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct 1192  CACACCGCGGCCAGCAGGCACCTGGCACCCACCTTCCCTGCTGCCAGGATGCCCAAGAAAAAGGTCAGCTCCAC  1265

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct 1266  CGAAGGGGCTGCCATGGAAGAGCCCAAGAGGAGATCAGCGCAATTGTCAGCTAAACCTCCTGCAAAAGTGGAAG  1339

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct 1340  CGAAGCCGAAAAAGGCAGCAGCGAAGGATAAATTTTCAGACACAAAAGTGCAAAAAAAGGGAAAAGGGGAGCAA  1413

Query  481  --------------------------------------------------------------------------  480
                                                                                      
Sbjct 1414  AGGGAAAACAGGCCGAAGTGGCTAACCAAAAAACTAAAGAAGATTTACCTGCAGAAAACAGGGGAAACGAAAAC  1487

Query  481  -------------------------  480
                                     
Sbjct 1488  TGAGGAGAGTCCAGCCTCTGATGAA  1512

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