Construct: ORF ccsbBroadEn_11975
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007464.1_s300c1, BRDN0000385853
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARL17A (51326)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001039083.4 | 90.3% | 90.3% | 1_51del |
| 2 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001113738.1 | 90.3% | 90.3% | 1_51del |
| 3 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001363805.1 | 88.2% | 87.2% | (many diffs) |
| 4 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524877.3 | 88.2% | 87.2% | (many diffs) |
| 5 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546389.2 | 88% | 87.2% | (many diffs) |
| 6 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546369.3 | 88% | 86.7% | (many diffs) |
| 7 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524876.3 | 81.2% | 81.1% | 1_51del;528_532delTCGTGinsAA;535_588del |
| 8 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_017024729.2 | 81.2% | 81.1% | 1_51del;528_532delTCGTGinsAA;535_588del |
| 9 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_017030176.1 | 81.1% | 81.1% | (many diffs) |
| 10 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030180.2 | 81.1% | 80.6% | (many diffs) |
| 11 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524875.3 | 77.6% | 77.8% | 1_51del;525_526insGTAA;528_609del |
| 12 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546387.2 | 77.4% | 77.8% | (many diffs) |
| 13 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546367.3 | 77.4% | 77.3% | (many diffs) |
| 14 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030179.2 | 73.6% | 73.1% | (many diffs) |
| 15 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001288811.1 | 57.8% | 45.9% | (many diffs) |
| 16 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546390.3 | 55.6% | 39.9% | (many diffs) |
| 17 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546376.3 | 55.4% | 39.4% | (many diffs) |
| 18 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001103154.2 | 52.7% | 37% | (many diffs) |
| 19 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001352769.1 | 52.7% | 37% | (many diffs) |
| 20 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_006725284.3 | 52.7% | 37% | (many diffs) |
| 21 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_024452506.1 | 52.7% | 37% | (many diffs) |
| 22 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_024452507.1 | 52.7% | 37% | (many diffs) |
| 23 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001288812.1 | 52% | 37% | (many diffs) |
| 24 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_016632.2 | 52% | 37% | (many diffs) |
| 25 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_005257439.5 | 52% | 37% | (many diffs) |
| 26 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934477.3 | 50.9% | 1_242del;716_717insGTAA;719_931del | |
| 27 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951555.2 | 49.4% | (many diffs) | |
| 28 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756214.1 | 49.3% | (many diffs) | |
| 29 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756211.2 | 46.6% | (many diffs) | |
| 30 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934479.2 | 46.3% | 1_243del;717_718insGTAA;720_1023del | |
| 31 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934475.3 | 43.1% | 1_242del;716_717insGTAA;719_1099del | |
| 32 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001330240.1 | 42.8% | 41.8% | (many diffs) |
| 33 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001330244.1 | 42.8% | 41.8% | (many diffs) |
| 34 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546391.2 | 42.8% | 41.8% | (many diffs) |
| 35 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546379.2 | 42.6% | 41.2% | (many diffs) |
| 36 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951553.3 | 41.8% | (many diffs) | |
| 37 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934476.3 | 41.3% | 1_242del;716_717insGTAA;719_1148del | |
| 38 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001288813.1 | 39.7% | 39.5% | 1_51del;262T>G;264_264delGins268 |
| 39 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_006725288.3 | 39.7% | 39.5% | 1_51del;262T>G;264_264delGins268 |
| 40 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030181.2 | 39.5% | 38.9% | (many diffs) |
| 41 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951558.2 | 38.9% | (many diffs) | |
| 42 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756217.1 | 38.8% | (many diffs) | |
| 43 | human | 105369225 | LOC105369225 | uncharacterized LOC105369225 | XR_001752910.2 | 38.5% | (many diffs) | |
| 44 | human | 105369225 | LOC105369225 | uncharacterized LOC105369225 | XR_001756626.2 | 38.5% | (many diffs) | |
| 45 | human | 105376844 | LOC105376844 | uncharacterized LOC105376844 | XR_934914.3 | 36.6% | (many diffs) | |
| 46 | human | 105376844 | LOC105376844 | uncharacterized LOC105376844 | XR_934912.3 | 35.9% | (many diffs) | |
| 47 | human | 105369225 | LOC105369225 | uncharacterized LOC105369225 | XR_001756625.2 | 35.3% | (many diffs) | |
| 48 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951557.2 | 32.2% | (many diffs) | |
| 49 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756215.1 | 32.2% | (many diffs) | |
| 50 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_002958881.1 | 31% | (many diffs) | |
| 51 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_001756189.1 | 30.3% | (many diffs) | |
| 52 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951554.2 | 29.7% | (many diffs) | |
| 53 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756213.2 | 29.7% | (many diffs) | |
| 54 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756210.2 | 28.7% | (many diffs) | |
| 55 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951556.2 | 25% | (many diffs) | |
| 56 | human | 10230 | NBR2 | neighbor of BRCA1 lncRNA 2 | NR_003108.2 | 23.9% | (many diffs) | |
| 57 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934478.3 | 23.7% | 1_243del;717_718insGTAA;720_2001del | |
| 58 | human | 105376844 | LOC105376844 | uncharacterized LOC105376844 | XR_934913.3 | 20.9% | (many diffs) | |
| 59 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934480.3 | 18.4% | (many diffs) | |
| 60 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756216.2 | 18.1% | (many diffs) | |
| 61 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756212.2 | 17.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 546
- ORF length:
- 480
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG GATTCTTATA TTGAGTTTGG ATACAGCTGG AAAAACCACC ATCTTGTATA 121 AATTGAAGCT GGGGGAGACT GTGCCTGCCG TCCCTACAGT AGGTTTCTGT GTGGAGACAG 181 TAGAATATAA AAATAACACC TTCGCTGTCT GGGATGTTGG CAGCCACTTC AAAATCAGAC 241 CTCTGTGGCA GCATTTTTTC CAGAACACAA AAGGTGCCAG AAGCCCAGGA AGCACACATC 301 AAGGCTCACT TGCCAGCGGG GTGCTGCCAA TAAAATGTAG TCACGTGGAA TTTGGAATGT 361 GGAAAGGAGG TAGAAGTCAT CCTTTCCTCC CCCATAGCAG CAGGTGTGCA GGCTCTGGTG 421 GTCAGCTGGA CTCCATACTC CCCCACCAGT CACCAGCCTG GGGACCGTGG GGCTGCAAGG 481 ACCTCAGCAG CGGTTTCCCA AGTTTCCTGA CTTCTTCCAT CCTCTGGAAA TCAGCTGTGG 541 TAAAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 601 gttgcaacga ac