Construct: ORF ccsbBroadEn_11975

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007464.1_s300c1, BRDN0000385853
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARL17A (51326)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 100506084 ARL17B ADP ribosylation factor lik... NM_001039083.4 90.3% 90.3% 1_51del
2 human 51326 ARL17A ADP ribosylation factor lik... NM_001113738.1 90.3% 90.3% 1_51del
3 human 100506084 ARL17B ADP ribosylation factor lik... NM_001363805.1 88.2% 87.2% (many diffs)
4 human 51326 ARL17A ADP ribosylation factor lik... XM_011524877.3 88.2% 87.2% (many diffs)
5 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546389.2 88% 87.2% (many diffs)
6 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546369.3 88% 86.7% (many diffs)
7 human 51326 ARL17A ADP ribosylation factor lik... XM_011524876.3 81.2% 81.1% 1_51del;528_532delTCGTGinsAA;535_588del
8 human 51326 ARL17A ADP ribosylation factor lik... XM_017024729.2 81.2% 81.1% 1_51del;528_532delTCGTGinsAA;535_588del
9 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_017030176.1 81.1% 81.1% (many diffs)
10 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_017030180.2 81.1% 80.6% (many diffs)
11 human 51326 ARL17A ADP ribosylation factor lik... XM_011524875.3 77.6% 77.8% 1_51del;525_526insGTAA;528_609del
12 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546387.2 77.4% 77.8% (many diffs)
13 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546367.3 77.4% 77.3% (many diffs)
14 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_017030179.2 73.6% 73.1% (many diffs)
15 human 51326 ARL17A ADP ribosylation factor lik... NM_001288811.1 57.8% 45.9% (many diffs)
16 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546390.3 55.6% 39.9% (many diffs)
17 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546376.3 55.4% 39.4% (many diffs)
18 human 100506084 ARL17B ADP ribosylation factor lik... NM_001103154.2 52.7% 37% (many diffs)
19 human 100506084 ARL17B ADP ribosylation factor lik... NM_001352769.1 52.7% 37% (many diffs)
20 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_006725284.3 52.7% 37% (many diffs)
21 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_024452506.1 52.7% 37% (many diffs)
22 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_024452507.1 52.7% 37% (many diffs)
23 human 51326 ARL17A ADP ribosylation factor lik... NM_001288812.1 52% 37% (many diffs)
24 human 51326 ARL17A ADP ribosylation factor lik... NM_016632.2 52% 37% (many diffs)
25 human 51326 ARL17A ADP ribosylation factor lik... XM_005257439.5 52% 37% (many diffs)
26 human 51326 ARL17A ADP ribosylation factor lik... XR_934477.3 50.9% 1_242del;716_717insGTAA;719_931del
27 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951555.2 49.4% (many diffs)
28 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756214.1 49.3% (many diffs)
29 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756211.2 46.6% (many diffs)
30 human 51326 ARL17A ADP ribosylation factor lik... XR_934479.2 46.3% 1_243del;717_718insGTAA;720_1023del
31 human 51326 ARL17A ADP ribosylation factor lik... XR_934475.3 43.1% 1_242del;716_717insGTAA;719_1099del
32 human 100506084 ARL17B ADP ribosylation factor lik... NM_001330240.1 42.8% 41.8% (many diffs)
33 human 51326 ARL17A ADP ribosylation factor lik... NM_001330244.1 42.8% 41.8% (many diffs)
34 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546391.2 42.8% 41.8% (many diffs)
35 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546379.2 42.6% 41.2% (many diffs)
36 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951553.3 41.8% (many diffs)
37 human 51326 ARL17A ADP ribosylation factor lik... XR_934476.3 41.3% 1_242del;716_717insGTAA;719_1148del
38 human 51326 ARL17A ADP ribosylation factor lik... NM_001288813.1 39.7% 39.5% 1_51del;262T>G;264_264delGins268
39 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_006725288.3 39.7% 39.5% 1_51del;262T>G;264_264delGins268
40 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_017030181.2 39.5% 38.9% (many diffs)
41 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951558.2 38.9% (many diffs)
42 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756217.1 38.8% (many diffs)
43 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001752910.2 38.5% (many diffs)
44 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001756626.2 38.5% (many diffs)
45 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934914.3 36.6% (many diffs)
46 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934912.3 35.9% (many diffs)
47 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001756625.2 35.3% (many diffs)
48 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951557.2 32.2% (many diffs)
49 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756215.1 32.2% (many diffs)
50 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_002958881.1 31% (many diffs)
51 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_001756189.1 30.3% (many diffs)
52 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951554.2 29.7% (many diffs)
53 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756213.2 29.7% (many diffs)
54 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756210.2 28.7% (many diffs)
55 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951556.2 25% (many diffs)
56 human 10230 NBR2 neighbor of BRCA1 lncRNA 2 NR_003108.2 23.9% (many diffs)
57 human 51326 ARL17A ADP ribosylation factor lik... XR_934478.3 23.7% 1_243del;717_718insGTAA;720_2001del
58 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934913.3 20.9% (many diffs)
59 human 51326 ARL17A ADP ribosylation factor lik... XR_934480.3 18.4% (many diffs)
60 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756216.2 18.1% (many diffs)
61 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756212.2 17.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
546
ORF length:
480
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG GATTCTTATA TTGAGTTTGG ATACAGCTGG AAAAACCACC ATCTTGTATA
121AATTGAAGCT GGGGGAGACT GTGCCTGCCG TCCCTACAGT AGGTTTCTGT GTGGAGACAG
181TAGAATATAA AAATAACACC TTCGCTGTCT GGGATGTTGG CAGCCACTTC AAAATCAGAC
241CTCTGTGGCA GCATTTTTTC CAGAACACAA AAGGTGCCAG AAGCCCAGGA AGCACACATC
301AAGGCTCACT TGCCAGCGGG GTGCTGCCAA TAAAATGTAG TCACGTGGAA TTTGGAATGT
361GGAAAGGAGG TAGAAGTCAT CCTTTCCTCC CCCATAGCAG CAGGTGTGCA GGCTCTGGTG
421GTCAGCTGGA CTCCATACTC CCCCACCAGT CACCAGCCTG GGGACCGTGG GGCTGCAAGG
481ACCTCAGCAG CGGTTTCCCA AGTTTCCTGA CTTCTTCCAT CCTCTGGAAA TCAGCTGTGG
541TAAAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
601gttgcaacga ac

Download FASTA (ORF) (Full)