Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12355
- Subject:
- NR_144392.1
- Aligned Length:
- 5502
- Identities:
- 840
- Gaps:
- 4662
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCGCGGGCGCGTGCGCAGTGGCGGGCCGGGCGCGTGCGCAGCGCCGGCTTCTTCCCAGCGCGAGTTGCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTAACGCTCCTCCTCCAGCTTCCCACCCCCGCCGCCCGCCGCGGCCCGGTACCAACGGGTGGTCTCGCCGAGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGTCGTGCCTCGTGGTCCCGGGACTGCAGTGGTGTGCGCTCTCGGCGCGTGGCGCTAGGCATGGCGATGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCAAGTAAACGCGCTGTGCGAGCAGCTGGTGAAAGCGGTGACGGTCATGATGGACCCCAACTCCACCCAGCGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACCGGCTGGAAGCCCTCAAGTTTTGTGAGGAGTTTAAAGAAAAGTGTCCTATCTGTGTCCCCTGTGGCTTGAGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTGGCTGAGAAAACACAAGTTGCCATCGTCAGACATTTTGGCCTTCAGATCCTGGAACACGTTGTCAAGTTTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGGAACGGCATGTCTCGATTGGAGAAGGTGTATCTGAAGAACAGTGTCATGGAGCTGATTGCAAATGGAACAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGAACATTTTGGAAGAGGAGAACCATATTAAAGATGCTCTGTCTCGAATTGTAGTGGAAATGATCAAGCGAGAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGCCACAGCATTGGCCTGACATGCTAATAGAATTGGACACTCTTTCCAAACAAGGGGAAACACAGACAGAATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGTGATGTTTATCCTTTTGCGACTGGCAGAGGATGTAGTGACTTTTCAGACACTTCCCCCTCAAAGAAGAAGGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACATCCAGCAAACATTAACCCAGAACATGGAAAGGATCTTCAGTTTTCTGCTTAACACACTTCAAGAAAATGTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AACAAGTATCAGCAAGTGAAGACAGATACTTCTCAGGAGTCAAAGGCGCAAGCAAACTGTCGAGTAGGAGTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCACTGAATACTCTAGCAGGCTATATTGACTGGGTGTCTATGAGTCACATCACTGCTGAAAACTGTAAACTCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGGAGATACTGTGTTTGCTGTTGAATGAACAGGAACTTCAGTTGGGAGCCGCTGAGTGTCTTCTCATTGCAGTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCAGAAAAGGCAAGTTGGAAGACCGGAAGCCCTTGATGGTCTTATTTGGAGATGTTGCCATGCATTATATACT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTCCGCCGCACAGACTGCTGATGGAGGAGGTTTGGTAGAAAAACACTACGTCTTTCTGAAGAGGCTCTGTCAGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTTGTGTGCGCTGGGCAATCAGCTGTGTGCATTGCTGGGTGCAGATTCTGATGTAGAAACACCATCAAACTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGAAAATACCTGGAATCTTTTCTTGCTTTCACAACCCATCCAAGTCAGTTTCTACGCTCTTCAACTCAGATGAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTGGGGAGCCCTCTTCAGGCATGAAATCCTGTCCCGTGATCCTTTGCTATTAGCAATAATACCAAAATATCTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTGCTTCCATGACTAACTTGGTCAAGATGGGCTTTCCTTCTAAAACAGACAGCCCTAGCTGTGAATATTCTCGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTGATTTTGATAGCGATGAGGACTTCAATGCTTTCTTCAACTCCTCCCGAGCACAACAAGGAGAGGTGATGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTTGGCATGTCGTTTGGATCCCAAAACTAGCTTCCAGATGGCTGGGGAGTGGCTAAAGTATCAACTATCAACTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCTTGATGCTGGTTCTGTGAATTCTTGTTCTGCAGTTGGAACTGGAGAAGGAAGCCTCTGTTCCGTCTTCTCA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCTTCATTCGTGCAGTGGGAAGCCATGACTCTTTTTTTGGAAAGTGTTATCACCCAGATGTTTCGAACACTAAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TAGAGAAGAAATTCCTGTTAATGATGGAATAGAGCTATTGCAGATGGTTCTGAACTTTGATACCAAGGATCCCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCATCCTGTCCTGCGTCCTTACTAATGTCTCTGCACTCTTTCCATTTGTCACCTACAGACCAGAGTTCCTGCCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGGTCTTCTCTAAGCTATTTTCATCTGTCACTTTTGAAACTGTTGAAGAAAGTAAGGCCCCCAGAACCCGGGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGTGAGGAATGTGAGGAGGCATGCTTGTTCCTCCATCATCAAGATGTGTCGTGACTACCCCCAGCTTGTGCTGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCAATTTTGACATGCTTTATAACCATGTGAAGCAACTCCTCTCCAATGAGCTACTCCTGACACAAATGGAGAAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGTGCCCTCATGGAAGCCCTGGTTCTCATTAGCAACCAATTTAAGAACTACGAGCGTCAGAAGGTGTTCCTAGA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGAGCTGATGGCACCAGTGGCCAGCATCTGGCTTTCTCAAGACATGCACAGAGTGCTGTCAGATGTTGATGCTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCATTGCGTATGTGGGTACAGATCAGAAGAGCTGTGACCCAGGCCTGGAGGATCCGTGTGGCTTAAACCGTGCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CGATCTTGAATTCTTGAGTTAGTTCCCACAGCAGAGCAGATGGTCTTTTCTATGAAGTCATTATTTTGGCTTTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGGATCTCTAAATAGCTCTGAAGACTGAAGGTGTAATGAGGAAGTAGGTCAGAACTTGGTCAGCAGGATGAGCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTGTGTATACAGCATTCTGGGTGTGGTGAAACGAACTTGCTGGCCCACTGACCTAGAAGAGGCCAAAGCTGGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGATTTGTGGTGGGTTATACATCCAGTGGAAATCCAATCTTCCGTAACCCCTGCACAGAGCAGATTCTGAAACT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCTTGACAATTTGCTTGCGCTTATAAGAACCCACAATACATTATATGCACCAGAAATGCTAGCCAAAATGGCAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGCCTTTCACCAAGGCTCTGGATATGCTTGACGCGGAAAAATCTGCTATATTAGGATTACCTCAACCTCTCTTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAACTCAATGACTCTCCTGTCTTCAAAACCGTCTTGGAAAGAATGCAGCGTTTCTTCTCTACCCTCTATGAAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CTGTTTTCATATCCTAGGGAAGGCAGGCCCTTCCATGCAGCAAGACTTCTATACTGTGGAGGACCTTGCTACCC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGCTTCTCAGCTCAGCCTTTGTCAACTTGAACAATATTCCTGACTACCGACTCAGACCCATGCTTCGTGTCTTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTAAAGCCTCTGGTGCTCTTCTGTCCCCCAGAGCACTATGAAGCCCTGGTATCCCCCATCCTCGGACCTCTTTT 3108
Query 1 -------------ATGAGGCTTTCTCAGAAATGGCAAGTTATCAACCAAAGGAGCCTGCTGTGTGGAGAAGATG 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 CACCTACCTCCATATGAGGCTTTCTCAGAAATGGCAAGTTATCAACCAAAGGAGCCTGCTGTGTGGAGAAGATG 3182
Query 62 AGGCTGCAGATGAAAACCCAGAGTCTCAAGAGATGCTGGAGGAGCAACTGGTGAGGATGTTAACCCGAGAAGTC 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 AGGCTGCAGATGAAAACCCAGAGTCTCAAGAGATGCTGGAGGAGCAACTGGTGAGGATGTTAACCCGAGAAGTC 3256
Query 136 ATGGACCTAATCACGGTTTGCTGTGTTTCAAAGAAGGGTGCTGACCACAGTAGTGCTCCCCCAGCAGATGGAGA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 ATGGACCTAATCACGGTTTGCTGTGTTTCAAAGAAGGGTGCTGACCACAGTAGTGCTCCCCCAGCAGATGGAGA 3330
Query 210 CGATGAAGAAATGATGGCCACAGAGGTCACCCCCTCAGCTATGGCAGAGCTTACAGACCTGGGCAAATGTCTGA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CGATGAAGAAATGATGGCCACAGAGGTCACCCCCTCAGCTATGGCAGAGCTTACAGACCTGGGCAAATGTCTGA 3404
Query 284 TGAAGCATGAGGATGTTTGTACAGCGCTATTAATTACAGCCTTCAATTCCCTGGCCTGGAAAGATACTCTGTCC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TGAAGCATGAGGATGTTTGTACAGCGCTATTAATTACAGCCTTCAATTCCCTGGCCTGGAAAGATACTCTGTCC 3478
Query 358 TGCCAGAGGACAACCTCACAGCTCTGCTGGCCTCTCCTCAAACAAGTGCTGTCAGGGACACTGCTCGCAGATGC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 TGCCAGAGGACAACCTCACAGCTCTGCTGGCCTCTCCTCAAACAAGTGCTGTCAGGGACACTGCTCGCAGATGC 3552
Query 432 AGTTACGTGGCTTTTCACCAGTGTGCTGAAAGGCTTACAGATGCACGGGCAGCACGACGGGTGCATGGCTTCCC 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 AGTTACGTGGCTTTTCACCAGTGTGCTGAAAGGCTTACAGATGCACGGGCAGCACGACGGGTGCATGGCTTCCC 3626
Query 506 TGGTCCATCTGGCCTTCCAGATATACGAGGCACTGCGCCCCAGGTACCTGGAGATAAGAGCTGTAATGGAGCAA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 TGGTCCATCTGGCCTTCCAGATATACGAGGCACTGCGCCCCAGGTACCTGGAGATAAGAGCTGTAATGGAGCAA 3700
Query 580 ATCCCTGAAATACAGAAGGACTCACTGGACCAGTTTGACTGCAAGCTTTTAAACCCCTCCCTGCAGAAAGTGGC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 ATCCCTGAAATACAGAAGGACTCACTGGACCAGTTTGACTGCAAGCTTTTAAACCCCTCCCTGCAGAAAGTGGC 3774
Query 654 TGACAAGCGCCGAAAGGACCAATTCAAACGCCTCATTGCTGGTTGCATTGGGAAACCCTTGGGAGAGCAGTTCC 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 TGACAAGCGCCGAAAGGACCAATTCAAACGCCTCATTGCTGGTTGCATTGGGAAACCCTTGGGAGAGCAGTTCC 3848
Query 728 GAAAAGAAGTTCACATTAAGAATCTTCCCTCACTTTTCAAAAAAACAAAGCCAATGCTGGAGACGGAGGTGCTG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GAAAAGAAGTTCACATTAAGAATCTTCCCTCACTTTTCAAAAAAACAAAGCCAATGCTGGAGACGGAGGTGCTG 3922
Query 802 GACAATGATGGGGGTGGCCTGGCCACCATCTTTGAACCC----------------------------------- 840
|||||||||||||||||||||||||||||||||||||||
Sbjct 3923 GACAATGATGGGGGTGGCCTGGCCACCATCTTTGAACCCTGAATCAAGCTTTTGGGCATCCTTCCTCGGCCTTT 3996
Query 841 -------------------------------------------------------------------------- 840
Sbjct 3997 CTTGTCATCTCTTCTTTCCCTTTGTAGCCGATCTCTAGGCCCTTCTTGCACTGCCACCTCACTTTCCACCACTG 4070
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4071 TCAGCCTGGAAAGAGATCCAGGTCTGGAGCTGGAGAGAACAGGCCCTGTGCAGGACCAGAAGTAATTATACTAA 4144
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4145 AGTATCAAGAAAGGGAGTTAGGGCTTAAACTATTCTGTCTAGATGTCCCAGATAGTTCCCATTCTACTTGGAGA 4218
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4219 TTTGGCTTTTCCAAGAAAAGCTAGAGCAGAGCAGCCCTTCTCCCACAAGCCCTCCCACCCCCGTGCAGCCACAT 4292
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4293 ACCTGTACAGAATGGTAACTAAGGGTGCTGTGCCCAACCCTGCGACTAGCAAGGCTCGCAGCAAGAGCACAGCC 4366
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4367 CTCAACTACTTGTGCCAGAGTTTCTCTTGGACCACTCCAACTCCCACTGAGCCCTTTTGCTGCTGGGCTGGCAG 4440
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4441 GAAACTTTCCCCACTCCCTAAGGGGCATGTCTGGGTTAGGTGCTAAGTGCTGAAGAGAACTTGGTCAGTTCTCT 4514
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4515 CAACTTTGCTTTGGGCAAGAATCTGGTCACCTGATGGGATCCATGGTACAGGCTACTGCTAAACTTGGCACAGT 4588
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4589 ATCAAGTATAGTACCTCCAAGGACCAGGGCTGGGAAGTCTTTAGTGCTAACATCCCCTTTAGAGTTCACACATC 4662
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4663 TTGCCCTTCCATGAATGACCCCTCAGTCTGGCCTCCCCAGCCTCAAGGTCCACTCAGGCACAAGAGCCACAGTA 4736
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4737 CCCTAGATAGTGTCACATGACACCGTTGTCATCCAAGGATAATACAGACCAACTAGGCTACATCTGTGATGAGC 4810
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4811 AGCTAGCAAAGCCGCTGGTCTTCTCCTAGGACTAAGTCCAGGTGCCTTCCACAATCTCATGGTCTTTCAGGTCC 4884
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4885 CTGGTTACTTTTCTCAAAGGCCATTTCCAAAAGAATACATGCCTTCACATCACAACCTGTACTGTGAGTCCATT 4958
Query 841 -------------------------------------------------------------------------- 840
Sbjct 4959 CTAGAGGTCACTGAAAGGCCCTGTAAAGAGAGGACATGGATACGGGACCTGGCCCTGAGGTTATTACTGGCCGT 5032
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5033 AAGGCAGAGTTAATCCATACAGAAACCAGTGTGTCCATGTGCTCTGCACAAAAACAGACCTGTTGTCCATCCAG 5106
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5107 TCCACTGACAAGAGGGTTTCCCCGAGAGCCGAAGTGGACTGAAGCTACAGTTTTTAGCTGGTGCGGGCCACAGG 5180
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5181 CAGGGTCAGATTGAGAAGAAGCAAAGCTGGGGAAGCAGAAGTTGGGAGTCTTGTGTTGCTCCCTCTTCCTGTGT 5254
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5255 GGTGCTCTGGGTTTCTGTGGATCGTGAAGGCGATCTCAAGAGTGTTTCCCTCCAAACCTGATAGCTGCCTATTC 5328
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5329 CTGTCTGGTTGGGGCTGTGGAGGATGTAGTTGTATTTATTGCATTGTAATATTTTTAACATCCTGTGACTTCAT 5402
Query 841 -------------------------------------------------------------------------- 840
Sbjct 5403 GCTAGAAATTTTCTATTGTTTATAGAAACTTTTTGTAGAAACATTAACTCTAAAGCACATCTGCATGTCAGTAA 5476
Query 841 -------------------------- 840
Sbjct 5477 AAATCTCAGTTTCGTACAGAAAGGGA 5502
