Construct: ORF ccsbBroadEn_12355

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002182.1_s300c1, BRDN0000386075
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
XPO5 (57510)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57510 XPO5 exportin 5 NM_020750.3 23.2% 23.2% 1_2772del
2 human 57510 XPO5 exportin 5 NR_144392.1 15.2% 1_3121del;3962_5502del
3 mouse 72322 Xpo5 exportin 5 NM_028198.3 20% 20.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
906
ORF length:
840
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GCTTTCTCAG AAATGGCAAG TTATCAACCA AAGGAGCCTG CTGTGTGGAG
121AAGATGAGGC TGCAGATGAA AACCCAGAGT CTCAAGAGAT GCTGGAGGAG CAACTGGTGA
181GGATGTTAAC CCGAGAAGTC ATGGACCTAA TCACGGTTTG CTGTGTTTCA AAGAAGGGTG
241CTGACCACAG TAGTGCTCCC CCAGCAGATG GAGACGATGA AGAAATGATG GCCACAGAGG
301TCACCCCCTC AGCTATGGCA GAGCTTACAG ACCTGGGCAA ATGTCTGATG AAGCATGAGG
361ATGTTTGTAC AGCGCTATTA ATTACAGCCT TCAATTCCCT GGCCTGGAAA GATACTCTGT
421CCTGCCAGAG GACAACCTCA CAGCTCTGCT GGCCTCTCCT CAAACAAGTG CTGTCAGGGA
481CACTGCTCGC AGATGCAGTT ACGTGGCTTT TCACCAGTGT GCTGAAAGGC TTACAGATGC
541ACGGGCAGCA CGACGGGTGC ATGGCTTCCC TGGTCCATCT GGCCTTCCAG ATATACGAGG
601CACTGCGCCC CAGGTACCTG GAGATAAGAG CTGTAATGGA GCAAATCCCT GAAATACAGA
661AGGACTCACT GGACCAGTTT GACTGCAAGC TTTTAAACCC CTCCCTGCAG AAAGTGGCTG
721ACAAGCGCCG AAAGGACCAA TTCAAACGCC TCATTGCTGG TTGCATTGGG AAACCCTTGG
781GAGAGCAGTT CCGAAAAGAA GTTCACATTA AGAATCTTCC CTCACTTTTC AAAAAAACAA
841AGCCAATGCT GGAGACGGAG GTGCTGGACA ATGATGGGGG TGGCCTGGCC ACCATCTTTG
901AACCCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
961gttgcaacga ac

Download FASTA (ORF) (Full)