Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12356
- Subject:
- NR_144392.1
- Aligned Length:
- 5502
- Identities:
- 2004
- Gaps:
- 3498
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCGCGGGCGCGTGCGCAGTGGCGGGCCGGGCGCGTGCGCAGCGCCGGCTTCTTCCCAGCGCGAGTTGCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTAACGCTCCTCCTCCAGCTTCCCACCCCCGCCGCCCGCCGCGGCCCGGTACCAACGGGTGGTCTCGCCGAGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGTCGTGCCTCGTGGTCCCGGGACTGCAGTGGTGTGCGCTCTCGGCGCGTGGCGCTAGGCATGGCGATGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCAAGTAAACGCGCTGTGCGAGCAGCTGGTGAAAGCGGTGACGGTCATGATGGACCCCAACTCCACCCAGCGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACCGGCTGGAAGCCCTCAAGTTTTGTGAGGAGTTTAAAGAAAAGTGTCCTATCTGTGTCCCCTGTGGCTTGAGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTGGCTGAGAAAACACAAGTTGCCATCGTCAGACATTTTGGCCTTCAGATCCTGGAACACGTTGTCAAGTTTCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGGAACGGCATGTCTCGATTGGAGAAGGTGTATCTGAAGAACAGTGTCATGGAGCTGATTGCAAATGGAACAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGAACATTTTGGAAGAGGAGAACCATATTAAAGATGCTCTGTCTCGAATTGTAGTGGAAATGATCAAGCGAGAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGCCACAGCATTGGCCTGACATGCTAATAGAATTGGACACTCTTTCCAAACAAGGGGAAACACAGACAGAATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGTGATGTTTATCCTTTTGCGACTGGCAGAGGATGTAGTGACTTTTCAGACACTTCCCCCTCAAAGAAGAAGGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACATCCAGCAAACATTAACCCAGAACATGGAAAGGATCTTCAGTTTTCTGCTTAACACACTTCAAGAAAATGTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AACAAGTATCAGCAAGTGAAGACAGATACTTCTCAGGAGTCAAAGGCGCAAGCAAACTGTCGAGTAGGAGTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCACTGAATACTCTAGCAGGCTATATTGACTGGGTGTCTATGAGTCACATCACTGCTGAAAACTGTAAACTCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGGAGATACTGTGTTTGCTGTTGAATGAACAGGAACTTCAGTTGGGAGCCGCTGAGTGTCTTCTCATTGCAGTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCAGAAAAGGCAAGTTGGAAGACCGGAAGCCCTTGATGGTCTTATTTGGAGATGTTGCCATGCATTATATACT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTCCGCCGCACAGACTGCTGATGGAGGAGGTTTGGTAGAAAAACACTACGTCTTTCTGAAGAGGCTCTGTCAGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTTGTGTGCGCTGGGCAATCAGCTGTGTGCATTGCTGGGTGCAGATTCTGATGTAGAAACACCATCAAACTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGAAAATACCTGGAATCTTTTCTTGCTTTCACAACCCATCCAAGTCAGTTTCTACGCTCTTCAACTCAGATGAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTGGGGAGCCCTCTTCAGGCATGAAATCCTGTCCCGTGATCCTTTGCTATTAGCAATAATACCAAAATATCTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTGCTTCCATGACTAACTTGGTCAAGATGGGCTTTCCTTCTAAAACAGACAGCCCTAGCTGTGAATATTCTCGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTGATTTTGATAGCGATGAGGACTTCAATGCTTTCTTCAACTCCTCCCGAGCACAACAAGGAGAGGTGATGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTTGGCATGTCGTTTGGATCCCAAAACTAGCTTCCAGATGGCTGGGGAGTGGCTAAAGTATCAACTATCAACTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCTTGATGCTGGTTCTGTGAATTCTTGTTCTGCAGTTGGAACTGGAGAAGGAAGCCTCTGTTCCGTCTTCTCA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCTTCATTCGTGCAGTGGGAAGCCATGACTCTTTTTTTGGAAAGTGTTATCACCCAGATGTTTCGAACACTAAA 1776
Query 1 -------------------------------------------ATGGTTCTGAACTTTGATACCAAGGATCCCC 31
|||||||||||||||||||||||||||||||
Sbjct 1777 TAGAGAAGAAATTCCTGTTAATGATGGAATAGAGCTATTGCAGATGGTTCTGAACTTTGATACCAAGGATCCCC 1850
Query 32 TCATCCTGTCCTGCGTCCTTACTAATGTCTCTGCACTCTTTCCATTTGTCACCTACAGACCAGAGTTCCTGCCC 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCATCCTGTCCTGCGTCCTTACTAATGTCTCTGCACTCTTTCCATTTGTCACCTACAGACCAGAGTTCCTGCCC 1924
Query 106 CAGGTCTTCTCTAAGCTATTTTCATCTGTCACTTTTGAAACTGTTGAAGAAAGTAAGGCCCCCAGAACCCGGGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CAGGTCTTCTCTAAGCTATTTTCATCTGTCACTTTTGAAACTGTTGAAGAAAGTAAGGCCCCCAGAACCCGGGC 1998
Query 180 AGTGAGGAATGTGAGGAGGCATGCTTGTTCCTCCATCATCAAGATGTGTCGTGACTACCCCCAGCTTGTGCTGC 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AGTGAGGAATGTGAGGAGGCATGCTTGTTCCTCCATCATCAAGATGTGTCGTGACTACCCCCAGCTTGTGCTGC 2072
Query 254 CCAATTTTGACATGCTTTATAACCATGTGAAGCAACTCCTCTCCAATGAGCTACTCCTGACACAAATGGAGAAG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CCAATTTTGACATGCTTTATAACCATGTGAAGCAACTCCTCTCCAATGAGCTACTCCTGACACAAATGGAGAAG 2146
Query 328 TGTGCCCTCATGGAAGCCCTGGTTCTCATTAGCAACCAATTTAAGAACTACGAGCGTCAGAAGGTGTTCCTAGA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TGTGCCCTCATGGAAGCCCTGGTTCTCATTAGCAACCAATTTAAGAACTACGAGCGTCAGAAGGTGTTCCTAGA 2220
Query 402 GGAGCTGATGGCACCAGTGGCCAGCATCTGGCTTTCTCAAGACATGCACAGAGTGCTGTCAGATGTTGATGCTT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GGAGCTGATGGCACCAGTGGCCAGCATCTGGCTTTCTCAAGACATGCACAGAGTGCTGTCAGATGTTGATGCTT 2294
Query 476 TCATTGCGTATGTGGGTACAGATCAGAAGAGCTGTGACCCAGGCCTGGAGGATCCGTGTGGCTTAAACCGTGCA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TCATTGCGTATGTGGGTACAGATCAGAAGAGCTGTGACCCAGGCCTGGAGGATCCGTGTGGCTTAAACCGTGCA 2368
Query 550 CGA----------------------------------------------------------------------- 552
|||
Sbjct 2369 CGATCTTGAATTCTTGAGTTAGTTCCCACAGCAGAGCAGATGGTCTTTTCTATGAAGTCATTATTTTGGCTTTA 2442
Query 553 -------------------------------------------------------------------ATGAGCT 559
|||||||
Sbjct 2443 AGGATCTCTAAATAGCTCTGAAGACTGAAGGTGTAATGAGGAAGTAGGTCAGAACTTGGTCAGCAGGATGAGCT 2516
Query 560 TTTGTGTATACAGCATTCTGGGTGTGGTGAAACGAACTTGCTGGCCCACTGACCTAGAAGAGGCCAAAGCTGGG 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TTTGTGTATACAGCATTCTGGGTGTGGTGAAACGAACTTGCTGGCCCACTGACCTAGAAGAGGCCAAAGCTGGG 2590
Query 634 GGATTTGTGGTGGGTTATACATCCAGTGGAAATCCAATCTTCCGTAACCCCTGCACAGAGCAGATTCTGAAACT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 GGATTTGTGGTGGGTTATACATCCAGTGGAAATCCAATCTTCCGTAACCCCTGCACAGAGCAGATTCTGAAACT 2664
Query 708 TCTTGACAATTTGCTTGCGCTTATAAGAACCCACAATACATTATATGCACCAGAAATGCTAGCCAAAATGGCAG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 TCTTGACAATTTGCTTGCGCTTATAAGAACCCACAATACATTATATGCACCAGAAATGCTAGCCAAAATGGCAG 2738
Query 782 AGCCTTTCACCAAGGCTCTGGATATGCTTGACGCGGAAAAATCTGCTATATTAGGATTACCTCAACCTCTCTTG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 AGCCTTTCACCAAGGCTCTGGATATGCTTGACGCGGAAAAATCTGCTATATTAGGATTACCTCAACCTCTCTTG 2812
Query 856 GAACTCAATGACTCTCCTGTCTTCAAAACCGTCTTGGAAAGAATGCAGCGTTTCTTCTCTACCCTCTATGAAAA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 GAACTCAATGACTCTCCTGTCTTCAAAACCGTCTTGGAAAGAATGCAGCGTTTCTTCTCTACCCTCTATGAAAA 2886
Query 930 CTGTTTTCATATCCTAGGGAAGGCAGGCCCTTCCATGCAGCAAGACTTCTATACTGTGGAGGACCTTGCTACCC 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 CTGTTTTCATATCCTAGGGAAGGCAGGCCCTTCCATGCAGCAAGACTTCTATACTGTGGAGGACCTTGCTACCC 2960
Query 1004 AGCTTCTCAGCTCAGCCTTTGTCAACTTGAACAATATTCCTGACTACCGACTCAGACCCATGCTTCGTGTCTTT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 AGCTTCTCAGCTCAGCCTTTGTCAACTTGAACAATATTCCTGACTACCGACTCAGACCCATGCTTCGTGTCTTT 3034
Query 1078 GTAAAGCCTCTGGTGCTCTTCTGTCCCCCAGAGCACTATGAAGCCCTGGTATCCCCCATCCTCGGACCTCTTTT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 GTAAAGCCTCTGGTGCTCTTCTGTCCCCCAGAGCACTATGAAGCCCTGGTATCCCCCATCCTCGGACCTCTTTT 3108
Query 1152 CACCTACCTCCATATGAGGCTTTCTCAGAAATGGCAAGTTATCAACCAAAGGAGCCTGCTGTGTGGAGAAGATG 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 CACCTACCTCCATATGAGGCTTTCTCAGAAATGGCAAGTTATCAACCAAAGGAGCCTGCTGTGTGGAGAAGATG 3182
Query 1226 AGGCTGCAGATGAAAACCCAGAGTCTCAAGAGATGCTGGAGGAGCAACTGGTGAGGATGTTAACCCGAGAAGTC 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 AGGCTGCAGATGAAAACCCAGAGTCTCAAGAGATGCTGGAGGAGCAACTGGTGAGGATGTTAACCCGAGAAGTC 3256
Query 1300 ATGGACCTAATCACGGTTTGCTGTGTTTCAAAGAAGGGTGCTGACCACAGTAGTGCTCCCCCAGCAGATGGAGA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 ATGGACCTAATCACGGTTTGCTGTGTTTCAAAGAAGGGTGCTGACCACAGTAGTGCTCCCCCAGCAGATGGAGA 3330
Query 1374 CGATGAAGAAATGATGGCCACAGAGGTCACCCCCTCAGCTATGGCAGAGCTTACAGACCTGGGCAAATGTCTGA 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CGATGAAGAAATGATGGCCACAGAGGTCACCCCCTCAGCTATGGCAGAGCTTACAGACCTGGGCAAATGTCTGA 3404
Query 1448 TGAAGCATGAGGATGTTTGTACAGCGCTATTAATTACAGCCTTCAATTCCCTGGCCTGGAAAGATACTCTGTCC 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 TGAAGCATGAGGATGTTTGTACAGCGCTATTAATTACAGCCTTCAATTCCCTGGCCTGGAAAGATACTCTGTCC 3478
Query 1522 TGCCAGAGGACAACCTCACAGCTCTGCTGGCCTCTCCTCAAACAAGTGCTGTCAGGGACACTGCTCGCAGATGC 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 TGCCAGAGGACAACCTCACAGCTCTGCTGGCCTCTCCTCAAACAAGTGCTGTCAGGGACACTGCTCGCAGATGC 3552
Query 1596 AGTTACGTGGCTTTTCACCAGTGTGCTGAAAGGCTTACAGATGCACGGGCAGCACGACGGGTGCATGGCTTCCC 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 AGTTACGTGGCTTTTCACCAGTGTGCTGAAAGGCTTACAGATGCACGGGCAGCACGACGGGTGCATGGCTTCCC 3626
Query 1670 TGGTCCATCTGGCCTTCCAGATATACGAGGCACTGCGCCCCAGGTACCTGGAGATAAGAGCTGTAATGGAGCAA 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 TGGTCCATCTGGCCTTCCAGATATACGAGGCACTGCGCCCCAGGTACCTGGAGATAAGAGCTGTAATGGAGCAA 3700
Query 1744 ATCCCTGAAATACAGAAGGACTCACTGGACCAGTTTGACTGCAAGCTTTTAAACCCCTCCCTGCAGAAAGTGGC 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 ATCCCTGAAATACAGAAGGACTCACTGGACCAGTTTGACTGCAAGCTTTTAAACCCCTCCCTGCAGAAAGTGGC 3774
Query 1818 TGACAAGCGCCGAAAGGACCAATTCAAACGCCTCATTGCTGGTTGCATTGGGAAACCCTTGGGAGAGCAGTTCC 1891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 TGACAAGCGCCGAAAGGACCAATTCAAACGCCTCATTGCTGGTTGCATTGGGAAACCCTTGGGAGAGCAGTTCC 3848
Query 1892 GAAAAGAAGTTCACATTAAGAATCTTCCCTCACTTTTCAAAAAAACAAAGCCAATGCTGGAGACGGAGGTGCTG 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GAAAAGAAGTTCACATTAAGAATCTTCCCTCACTTTTCAAAAAAACAAAGCCAATGCTGGAGACGGAGGTGCTG 3922
Query 1966 GACAATGATGGGGGTGGCCTGGCCACCATCTTTGAACCC----------------------------------- 2004
|||||||||||||||||||||||||||||||||||||||
Sbjct 3923 GACAATGATGGGGGTGGCCTGGCCACCATCTTTGAACCCTGAATCAAGCTTTTGGGCATCCTTCCTCGGCCTTT 3996
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 3997 CTTGTCATCTCTTCTTTCCCTTTGTAGCCGATCTCTAGGCCCTTCTTGCACTGCCACCTCACTTTCCACCACTG 4070
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4071 TCAGCCTGGAAAGAGATCCAGGTCTGGAGCTGGAGAGAACAGGCCCTGTGCAGGACCAGAAGTAATTATACTAA 4144
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4145 AGTATCAAGAAAGGGAGTTAGGGCTTAAACTATTCTGTCTAGATGTCCCAGATAGTTCCCATTCTACTTGGAGA 4218
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4219 TTTGGCTTTTCCAAGAAAAGCTAGAGCAGAGCAGCCCTTCTCCCACAAGCCCTCCCACCCCCGTGCAGCCACAT 4292
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4293 ACCTGTACAGAATGGTAACTAAGGGTGCTGTGCCCAACCCTGCGACTAGCAAGGCTCGCAGCAAGAGCACAGCC 4366
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4367 CTCAACTACTTGTGCCAGAGTTTCTCTTGGACCACTCCAACTCCCACTGAGCCCTTTTGCTGCTGGGCTGGCAG 4440
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4441 GAAACTTTCCCCACTCCCTAAGGGGCATGTCTGGGTTAGGTGCTAAGTGCTGAAGAGAACTTGGTCAGTTCTCT 4514
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4515 CAACTTTGCTTTGGGCAAGAATCTGGTCACCTGATGGGATCCATGGTACAGGCTACTGCTAAACTTGGCACAGT 4588
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4589 ATCAAGTATAGTACCTCCAAGGACCAGGGCTGGGAAGTCTTTAGTGCTAACATCCCCTTTAGAGTTCACACATC 4662
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4663 TTGCCCTTCCATGAATGACCCCTCAGTCTGGCCTCCCCAGCCTCAAGGTCCACTCAGGCACAAGAGCCACAGTA 4736
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4737 CCCTAGATAGTGTCACATGACACCGTTGTCATCCAAGGATAATACAGACCAACTAGGCTACATCTGTGATGAGC 4810
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4811 AGCTAGCAAAGCCGCTGGTCTTCTCCTAGGACTAAGTCCAGGTGCCTTCCACAATCTCATGGTCTTTCAGGTCC 4884
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4885 CTGGTTACTTTTCTCAAAGGCCATTTCCAAAAGAATACATGCCTTCACATCACAACCTGTACTGTGAGTCCATT 4958
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 4959 CTAGAGGTCACTGAAAGGCCCTGTAAAGAGAGGACATGGATACGGGACCTGGCCCTGAGGTTATTACTGGCCGT 5032
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 5033 AAGGCAGAGTTAATCCATACAGAAACCAGTGTGTCCATGTGCTCTGCACAAAAACAGACCTGTTGTCCATCCAG 5106
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 5107 TCCACTGACAAGAGGGTTTCCCCGAGAGCCGAAGTGGACTGAAGCTACAGTTTTTAGCTGGTGCGGGCCACAGG 5180
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 5181 CAGGGTCAGATTGAGAAGAAGCAAAGCTGGGGAAGCAGAAGTTGGGAGTCTTGTGTTGCTCCCTCTTCCTGTGT 5254
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 5255 GGTGCTCTGGGTTTCTGTGGATCGTGAAGGCGATCTCAAGAGTGTTTCCCTCCAAACCTGATAGCTGCCTATTC 5328
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 5329 CTGTCTGGTTGGGGCTGTGGAGGATGTAGTTGTATTTATTGCATTGTAATATTTTTAACATCCTGTGACTTCAT 5402
Query 2005 -------------------------------------------------------------------------- 2004
Sbjct 5403 GCTAGAAATTTTCTATTGTTTATAGAAACTTTTTGTAGAAACATTAACTCTAAAGCACATCTGCATGTCAGTAA 5476
Query 2005 -------------------------- 2004
Sbjct 5477 AAATCTCAGTTTCGTACAGAAAGGGA 5502
