Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12859
Subject:
XR_001743693.2
Aligned Length:
3544
Identities:
1054
Gaps:
2484

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTACAATGATTACTTCAACACCGATTAAAGTGAATTTGAGGGTGCTTATGTGACATTTAGAAGAACTGCCCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAAGCATTCACAAATACAGTCTAGAATTCAAACACGACGTCCAGGACATGGAGACACGGGTTAGGAAATCACTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTATCTTAGTGGTAGGTAAATCCTAGAGAACGAATTCTTTGAAAAAAGCCAAAAATTACTCATTTGAATTTTGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAACTACAGTTTCGCCGGGCTTCTTAGCGACAACTGCAGCTAAGTGTCGGGGACAGAAGAGAGACTGAAGTGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCGCAAGCCCCCTTTGGCAAAGCCCACTCCGAGACCATCCGGATCCCGACCTACACCAGAGCAAATGTCTAAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGTGAGAAGCCGCTTCACCACCCTACAGATCCGCGGTGCAGAGATTTCCCTGCTAAGGTCCTAACTCCTGAATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGTACGGCGAGTACACCCGAAGAATCGAAAGGTACTTATCCCCCACTCAGTTCTAGAGGAAGCAGCGAGGTGGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCAAGATGCGTGGTAAGGCCCAGGGACTCTTTGTCAACGAAGTCCGTTAAACTTTCCGCCCTCCCGGGGGCCTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGCGGGCCAATTCCACTCACTTCTCGGAGGCTCCGGCCCAGCATGGTCCTCGTGCCCAGCCTGCCACCACAGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCAGGCAAGGGGGAAAAAGAGGTCACCGGTCGCTAGTGATGTTACATGGGCGCAGCCATCTTTAATTGTCACT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGCCCTTCAACACCGAGTACTTGGATTGGTTGAATTGCAGCCCGAGGAAATGATCTTTGTAGGCGATTGGTTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCGCCGCAAAGCCATCCCGGCGGCTAAGGAGAGCGGGCAGGCAAGGAGATTCCGGGCCAGGGTCGCGGCGGCAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCGGCAAGCGTTCGATTCTCTGGCGTTGGATCGCGAGCGGTGTCTGCTTGTCCCGCCGAGGGCTCCCAGGACAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGCAGGGATCTAGGGGGTTTGCGCACCTGCTTTTTAATGCCCCGCCCCCCCTTTTTTTTTTAAAGTGGAGGGGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGAAAGTGAGGGAGGAGAATGGACAGAATACTGACTGGAACGTTAATTCGAGCATTTCATATGCGAAGAGCGGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATAACAGTTCCGTATTCTTCTTTCAGTTTCTCCATTAGATTAGCTTCATTTTCGAATGCTCCGTTTTGCATGCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TAATTTTGAAACTAGCCCGTGGTTTGGCAGAATTTGACTGAATTCAGGGGTGAGAGTTTGATCCAGTCCAAGTG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TATTTGAATTTGAGCACGCAGTTCAACCAGTGTTTACAATGGAATTTCTGAAGACTTGTGTACTTAGAAGAAAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCATGCACTGCGGTTTGCTTCTGGAGAAGCAAAGTTGTCCAAAAGCCTTCAGTTAGAAGGATTAGTACTACCTC  1406

Query    1  ----------------ATGCCTGCTTGGGTGATAGATAAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGA  58
                            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCCTAGGAGCACTGTCATGCCTGCTTGGGTGATAGATAAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGA  1480

Query   59  ACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATA  132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATA  1554

Query  133  GACGTTAATATGAGAAGTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTTTACACGTGAAAATCAA  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GACGTTAATATGAGAAGTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTTTACACGTGAAAATCAA  1628

Query  207  AGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAAT  280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAAT  1702

Query  281  ACTTCAAGCCTGGAGATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAACAAGGCACTCTTTCAGAGTTTGTTGTA  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ACTTCAAGCCTGGAGATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAACAAGGCACTCTTTCAGAGTTTGTTGTA  1776

Query  355  GTCAGTGGGAATGAGGTCTCTCACAAACCCAAATCACTCACTCATACTCAAGCTGCCTCTTTGCCATATGTGGC  428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GTCAGTGGGAATGAGGTCTCTCACAAACCCAAATCACTCACTCATACTCAAGCTGCCTCTTTGCCATATGTGGC  1850

Query  429  TCTCACAGCCTGGTCTGCTATAAACAAAGTTGGTGGCCTGAATGACAAGAATTGCACAGGAAAACGTGTTCTAA  502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TCTCACAGCCTGGTCTGCTATAAACAAAGTTGGTGGCCTGAATGACAAGAATTGCACAGGAAAACGTGTTCTAA  1924

Query  503  TCTTAGGCGCTTCAGGCGGAGTTGGTACTTTTGCTATACAGGTAATGAAAGCATGGGATGCTCATGTGACAGCA  576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TCTTAGGCGCTTCAGGCGGAGTTGGTACTTTTGCTATACAGGTAATGAAAGCATGGGATGCTCATGTGACAGCA  1998

Query  577  GTTTGCTCCCAAGATGCCAGTGAACTTGTAAGGAAGCTTGGTGCAGACGATGTAATTGATTACAAATCTGGAAG  650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GTTTGCTCCCAAGATGCCAGTGAACTTGTAAGGAAGCTTGGTGCAGACGATGTAATTGATTACAAATCTGGAAG  2072

Query  651  TGTGGAAGAGCAGTTGAAATCCTTAAAACCATTTGATTTTATCCTTGATAATGTTGGCGGATCCACTGAAACAT  724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TGTGGAAGAGCAGTTGAAATCCTTAAAACCATTTGATTTTATCCTTGATAATGTTGGCGGATCCACTGAAACAT  2146

Query  725  GGGCTCCAGATTTTCTCAAGAAATGGTCAGGAGCCACCTATGTGACTTTGGTGACTCCTTTCCTCCTGAACATG  798
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GGGCTCCAGATTTTCTCAAGAAATGGTCAGGAGCCACCTATGTGACTTTGGTGACTCCTTTCCTCCTGAACATG  2220

Query  799  GACCGATTGGGCATAGCAGATGGCATGTTGCAGACAGGAGTCACTGTAGGTTCAAAGGCATTAAAGCATTTCTG  872
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GACCGATTGGGCATAGCAGATGGCATGTTGCAGACAGGAGTCACTGTAGGTTCAAAGGCATTAAAGCATTTCTG  2294

Query  873  GAAAGGAGTCCATTATCGCTGGGCATTTTTCATGGCCAGTGGCCCATGTTTAGATGACATTGCAGAACTGGTGG  946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GAAAGGAGTCCATTATCGCTGGGCATTTTTCATGGCCAGTGGCCCATGTTTAGATGACATTGCAGAACTGGTGG  2368

Query  947  ATGCGGGAAAGATCCGGCCAGTTATTGAACAAACCTTTCCTTTTTCTAAAGTTCCAGAAGCCTTCCTGAAGGTG  1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  ATGCGGGAAAGATCCGGCCAGTTATTGAACAAACCTTTCCTTTTTCTAAAGTTCCAGAAGCCTTCCTGAAGGTG  2442

Query 1021  GAAAGAGGACACGCACGAGGAAAGACTGTAATTAATGT-----TGTT---------------------------  1062
            ||||||||||||||||||||||||||  ||...|..||     |||.                           
Sbjct 2443  GAAAGAGGACACGCACGAGGAAAGAC--TAGACAGGGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCACA  2514

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2515  ATCACAGCTCACTGCAGCCTTGACCTTAAGCGATTCTCCTGCTTCAGCCTCTCAAGTAGGTAGGACTACAGCCT  2588

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2589  TCCAATGGAGCCCAAAGCTTGCCACTTTGATGTCAAATGTTTACATTTAGATATCTCTCCAATCAACCCATTGC  2662

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2663  AGTGTGCACTTCGAATATTCATTTACGGTAGGTCTCACTCTGTTGCCCAGGCTGAAGGGCAGTGGCACGATCAC  2736

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2737  AGCTCACTGCAGCCTCAACCTCCCAGACTCAAGTGATCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGG  2810

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2811  CGTGCACCACCACACCCGACTAATTTTTGTGTTTTCAATAGAGACAGGGTTTCAACATGTTGCCCAGGCTTGTC  2884

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2885  TGGAACTGCTGGGTTCCAGTGATCTGCCCACTTTGACCTCCCAAAGTGCTAGGGTTACAGACGTGAGTCACTGC  2958

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2959  GCCCAGCTTCTGTGATTTTTTTTATTTTCTTTTTTAGATGGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCAC  3032

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 3033  TGGTGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAG  3106

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 3107  CTGGGATTACAGGGGCCCCACCACCACACCTGGCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCACG  3180

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 3181  TTGGCCAGGCTGGTCCTGAACTCCTGACCTCAGGTGATCCACCCGCTTTGCCCTCCCAAAGTGCTGGGATTACA  3254

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 3255  GGCAGGAGCCACTGCACCCAGCCCGGCCTGATTATTTTTTAAATAGATGTAGTCCACCCCAACATCTGTTGTAC  3328

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 3329  ACAGGTAGACCATACCTATTGTTTTTGTGAATAAAAGAAAAATACTTTCTTAAAAACATGTATTACATTGATGG  3402

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 3403  TACTCATTCATTTTTATATCTTATTCAAAAGTATTCGAAGTTGAGGGGAAAAAAATCTTTCCAAGTTGACCTTT  3476

Query 1063  ------------------------------------------------------------------  1062
                                                                              
Sbjct 3477  AATCATTTGTATAACATCTGCCAGTCATTCCCAGCTAAAGGAAAATCCCAACCCTGAGCTCCAAAA  3542

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