Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12859
- Subject:
- XR_001743693.2
- Aligned Length:
- 3544
- Identities:
- 1054
- Gaps:
- 2484
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTACAATGATTACTTCAACACCGATTAAAGTGAATTTGAGGGTGCTTATGTGACATTTAGAAGAACTGCCCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGCATTCACAAATACAGTCTAGAATTCAAACACGACGTCCAGGACATGGAGACACGGGTTAGGAAATCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTATCTTAGTGGTAGGTAAATCCTAGAGAACGAATTCTTTGAAAAAAGCCAAAAATTACTCATTTGAATTTTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAACTACAGTTTCGCCGGGCTTCTTAGCGACAACTGCAGCTAAGTGTCGGGGACAGAAGAGAGACTGAAGTGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCGCAAGCCCCCTTTGGCAAAGCCCACTCCGAGACCATCCGGATCCCGACCTACACCAGAGCAAATGTCTAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGTGAGAAGCCGCTTCACCACCCTACAGATCCGCGGTGCAGAGATTTCCCTGCTAAGGTCCTAACTCCTGAATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTACGGCGAGTACACCCGAAGAATCGAAAGGTACTTATCCCCCACTCAGTTCTAGAGGAAGCAGCGAGGTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAAGATGCGTGGTAAGGCCCAGGGACTCTTTGTCAACGAAGTCCGTTAAACTTTCCGCCCTCCCGGGGGCCTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGCGGGCCAATTCCACTCACTTCTCGGAGGCTCCGGCCCAGCATGGTCCTCGTGCCCAGCCTGCCACCACAGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCAGGCAAGGGGGAAAAAGAGGTCACCGGTCGCTAGTGATGTTACATGGGCGCAGCCATCTTTAATTGTCACT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCCTTCAACACCGAGTACTTGGATTGGTTGAATTGCAGCCCGAGGAAATGATCTTTGTAGGCGATTGGTTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCGCCGCAAAGCCATCCCGGCGGCTAAGGAGAGCGGGCAGGCAAGGAGATTCCGGGCCAGGGTCGCGGCGGCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCGGCAAGCGTTCGATTCTCTGGCGTTGGATCGCGAGCGGTGTCTGCTTGTCCCGCCGAGGGCTCCCAGGACAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGCAGGGATCTAGGGGGTTTGCGCACCTGCTTTTTAATGCCCCGCCCCCCCTTTTTTTTTTAAAGTGGAGGGGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGAAAGTGAGGGAGGAGAATGGACAGAATACTGACTGGAACGTTAATTCGAGCATTTCATATGCGAAGAGCGGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATAACAGTTCCGTATTCTTCTTTCAGTTTCTCCATTAGATTAGCTTCATTTTCGAATGCTCCGTTTTGCATGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAATTTTGAAACTAGCCCGTGGTTTGGCAGAATTTGACTGAATTCAGGGGTGAGAGTTTGATCCAGTCCAAGTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATTTGAATTTGAGCACGCAGTTCAACCAGTGTTTACAATGGAATTTCTGAAGACTTGTGTACTTAGAAGAAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCATGCACTGCGGTTTGCTTCTGGAGAAGCAAAGTTGTCCAAAAGCCTTCAGTTAGAAGGATTAGTACTACCTC 1406
Query 1 ----------------ATGCCTGCTTGGGTGATAGATAAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGA 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TCCTAGGAGCACTGTCATGCCTGCTTGGGTGATAGATAAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGA 1480
Query 59 ACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATA 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATA 1554
Query 133 GACGTTAATATGAGAAGTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTTTACACGTGAAAATCAA 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GACGTTAATATGAGAAGTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTTTACACGTGAAAATCAA 1628
Query 207 AGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAAT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAAT 1702
Query 281 ACTTCAAGCCTGGAGATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAACAAGGCACTCTTTCAGAGTTTGTTGTA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACTTCAAGCCTGGAGATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAACAAGGCACTCTTTCAGAGTTTGTTGTA 1776
Query 355 GTCAGTGGGAATGAGGTCTCTCACAAACCCAAATCACTCACTCATACTCAAGCTGCCTCTTTGCCATATGTGGC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GTCAGTGGGAATGAGGTCTCTCACAAACCCAAATCACTCACTCATACTCAAGCTGCCTCTTTGCCATATGTGGC 1850
Query 429 TCTCACAGCCTGGTCTGCTATAAACAAAGTTGGTGGCCTGAATGACAAGAATTGCACAGGAAAACGTGTTCTAA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCTCACAGCCTGGTCTGCTATAAACAAAGTTGGTGGCCTGAATGACAAGAATTGCACAGGAAAACGTGTTCTAA 1924
Query 503 TCTTAGGCGCTTCAGGCGGAGTTGGTACTTTTGCTATACAGGTAATGAAAGCATGGGATGCTCATGTGACAGCA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TCTTAGGCGCTTCAGGCGGAGTTGGTACTTTTGCTATACAGGTAATGAAAGCATGGGATGCTCATGTGACAGCA 1998
Query 577 GTTTGCTCCCAAGATGCCAGTGAACTTGTAAGGAAGCTTGGTGCAGACGATGTAATTGATTACAAATCTGGAAG 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GTTTGCTCCCAAGATGCCAGTGAACTTGTAAGGAAGCTTGGTGCAGACGATGTAATTGATTACAAATCTGGAAG 2072
Query 651 TGTGGAAGAGCAGTTGAAATCCTTAAAACCATTTGATTTTATCCTTGATAATGTTGGCGGATCCACTGAAACAT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TGTGGAAGAGCAGTTGAAATCCTTAAAACCATTTGATTTTATCCTTGATAATGTTGGCGGATCCACTGAAACAT 2146
Query 725 GGGCTCCAGATTTTCTCAAGAAATGGTCAGGAGCCACCTATGTGACTTTGGTGACTCCTTTCCTCCTGAACATG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GGGCTCCAGATTTTCTCAAGAAATGGTCAGGAGCCACCTATGTGACTTTGGTGACTCCTTTCCTCCTGAACATG 2220
Query 799 GACCGATTGGGCATAGCAGATGGCATGTTGCAGACAGGAGTCACTGTAGGTTCAAAGGCATTAAAGCATTTCTG 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GACCGATTGGGCATAGCAGATGGCATGTTGCAGACAGGAGTCACTGTAGGTTCAAAGGCATTAAAGCATTTCTG 2294
Query 873 GAAAGGAGTCCATTATCGCTGGGCATTTTTCATGGCCAGTGGCCCATGTTTAGATGACATTGCAGAACTGGTGG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 GAAAGGAGTCCATTATCGCTGGGCATTTTTCATGGCCAGTGGCCCATGTTTAGATGACATTGCAGAACTGGTGG 2368
Query 947 ATGCGGGAAAGATCCGGCCAGTTATTGAACAAACCTTTCCTTTTTCTAAAGTTCCAGAAGCCTTCCTGAAGGTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 ATGCGGGAAAGATCCGGCCAGTTATTGAACAAACCTTTCCTTTTTCTAAAGTTCCAGAAGCCTTCCTGAAGGTG 2442
Query 1021 GAAAGAGGACACGCACGAGGAAAGACTGTAATTAATGT-----TGTT--------------------------- 1062
|||||||||||||||||||||||||| ||...|..|| |||.
Sbjct 2443 GAAAGAGGACACGCACGAGGAAAGAC--TAGACAGGGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCACA 2514
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2515 ATCACAGCTCACTGCAGCCTTGACCTTAAGCGATTCTCCTGCTTCAGCCTCTCAAGTAGGTAGGACTACAGCCT 2588
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2589 TCCAATGGAGCCCAAAGCTTGCCACTTTGATGTCAAATGTTTACATTTAGATATCTCTCCAATCAACCCATTGC 2662
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2663 AGTGTGCACTTCGAATATTCATTTACGGTAGGTCTCACTCTGTTGCCCAGGCTGAAGGGCAGTGGCACGATCAC 2736
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2737 AGCTCACTGCAGCCTCAACCTCCCAGACTCAAGTGATCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGG 2810
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2811 CGTGCACCACCACACCCGACTAATTTTTGTGTTTTCAATAGAGACAGGGTTTCAACATGTTGCCCAGGCTTGTC 2884
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2885 TGGAACTGCTGGGTTCCAGTGATCTGCCCACTTTGACCTCCCAAAGTGCTAGGGTTACAGACGTGAGTCACTGC 2958
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 2959 GCCCAGCTTCTGTGATTTTTTTTATTTTCTTTTTTAGATGGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCAC 3032
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 3033 TGGTGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAG 3106
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 3107 CTGGGATTACAGGGGCCCCACCACCACACCTGGCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCACG 3180
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 3181 TTGGCCAGGCTGGTCCTGAACTCCTGACCTCAGGTGATCCACCCGCTTTGCCCTCCCAAAGTGCTGGGATTACA 3254
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 3255 GGCAGGAGCCACTGCACCCAGCCCGGCCTGATTATTTTTTAAATAGATGTAGTCCACCCCAACATCTGTTGTAC 3328
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 3329 ACAGGTAGACCATACCTATTGTTTTTGTGAATAAAAGAAAAATACTTTCTTAAAAACATGTATTACATTGATGG 3402
Query 1063 -------------------------------------------------------------------------- 1062
Sbjct 3403 TACTCATTCATTTTTATATCTTATTCAAAAGTATTCGAAGTTGAGGGGAAAAAAATCTTTCCAAGTTGACCTTT 3476
Query 1063 ------------------------------------------------------------------ 1062
Sbjct 3477 AATCATTTGTATAACATCTGCCAGTCATTCCCAGCTAAAGGAAAATCCCAACCCTGAGCTCCAAAA 3542
